-
1
-
-
84946037477
-
Ensembl 2015
-
Cunningham, F., Amode, M. R., Barrell, D., Beal, K., Billis, K., Brent, S., Carvalho-Silva, D., Clapham, P., Coates, G., Fitzgerald, S. et al. (2015) Ensembl 2015. Nucleic Acids Res., 43, D662-D669.
-
(2015)
Nucleic Acids Res.
, vol.43
, pp. D662-D669
-
-
Cunningham, F.1
Amode, M.R.2
Barrell, D.3
Beal, K.4
Billis, K.5
Brent, S.6
Carvalho-Silva, D.7
Clapham, P.8
Coates, G.9
Fitzgerald, S.10
-
2
-
-
84883258242
-
Building models using Reactome pathways as templates
-
Croft, D. (2013) Building models using Reactome pathways as templates. Methods Mol. Biol., 1021, 273-283.
-
(2013)
Methods Mol. Biol.
, vol.1021
, pp. 273-283
-
-
Croft, D.1
-
3
-
-
84891793130
-
Gramene 2013: Comparative plant genomics resources
-
Monaco, M. K., Stein, J., Naithani, S., Wei, S., Dharmawardhana, P., Kumari, S., Amarasinghe, V., Youens-Clark, K., Thomason, J., Preece, J. et al. (2014) Gramene 2013: comparative plant genomics resources. Nucleic Acids Res., 42, D1193-D1199.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. D1193-D1199
-
-
Monaco, M.K.1
Stein, J.2
Naithani, S.3
Wei, S.4
Dharmawardhana, P.5
Kumari, S.6
Amarasinghe, V.7
Youens-Clark, K.8
Thomason, J.9
Preece, J.10
-
4
-
-
84862258252
-
GrameneMart: The BioMart data portal for the Gramene project
-
Spooner, W., Youens-Clark, K., Staines, D. and Ware, D. (2012) GrameneMart: the BioMart data portal for the Gramene project. Database: J. Biol. Databases Curation, bar056.
-
(2012)
Database: J. Biol. Databases Curation
, pp. bar056
-
-
Spooner, W.1
Youens-Clark, K.2
Staines, D.3
Ware, D.4
-
5
-
-
78651270854
-
Gramene database in 2010: Updates and extensions
-
Youens-Clark, K., Buckler, E., Casstevens, T., Chen, C., Declerck, G., Derwent, P., Dharmawardhana, P., Jaiswal, P., Kersey, P., Karthikeyan, A. S. et al. (2011) Gramene database in 2010: updates and extensions. Nucleic Acids Res., 39, D1085-D1094.
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. D1085-D1094
-
-
Youens-Clark, K.1
Buckler, E.2
Casstevens, T.3
Chen, C.4
Declerck, G.5
Derwent, P.6
Dharmawardhana, P.7
Jaiswal, P.8
Kersey, P.9
Karthikeyan, A.S.10
-
6
-
-
84876573388
-
The international nucleotide sequence database collaboration
-
Nakamura, Y., Cochrane, G., Karsch-Mizrachi, I. and International Nucleotide Sequence Database, C. (2013) The international nucleotide sequence database collaboration. Nucleic Acids Res., 41, D21-D24.
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. D21-D24
-
-
International Nucleotide Sequence Database, C,1
Nakamura, Y.2
Cochrane, G.3
Karsch-Mizrachi, I.4
-
7
-
-
84878547485
-
The International Oryza Map Alignment Project: Development of a genus-wide comparative genomics platform to help solve the 9 billion-people question
-
Jacquemin, J., Bhatia, D., Singh, K. and Wing, R. A. (2013) The International Oryza Map Alignment Project: development of a genus-wide comparative genomics platform to help solve the 9 billion-people question. Curr. Opin. Plant Biol., 16, 147-156.
-
(2013)
Curr. Opin. Plant Biol.
, vol.16
, pp. 147-156
-
-
Jacquemin, J.1
Bhatia, D.2
Singh, K.3
Wing, R.A.4
-
8
-
-
84904382612
-
A chromosome-based draft sequence of the hexaploid bread wheat (Triticum aestivum) genome
-
International Wheat Genome Sequencing, C. (2014) A chromosome-based draft sequence of the hexaploid bread wheat (Triticum aestivum) genome. Science, 345, 1251788.
-
(2014)
Science
, vol.345
, pp. 1251788
-
-
International Wheat Genome Sequencing, C,1
-
9
-
-
84925513772
-
A whole-genome shotgun approach for assembling and anchoring the hexaploid bread wheat genome
-
Chapman, J. A., Mascher, M., Buluc, A., Barry, K., Georganas, E., Session, A., Strnadova, V., Jenkins, J., Sehgal, S., Oliker, L. et al. (2015) A whole-genome shotgun approach for assembling and anchoring the hexaploid bread wheat genome. Genome Biol., 16, 26.
-
(2015)
Genome Biol.
, vol.16
, pp. 26
-
-
Chapman, J.A.1
Mascher, M.2
Buluc, A.3
Barry, K.4
Georganas, E.5
Session, A.6
Strnadova, V.7
Jenkins, J.8
Sehgal, S.9
Oliker, L.10
-
10
-
-
84905978616
-
Transcriptome and methylome profiling reveals relics of genome dominance in the mesopolyploid Brassica oleracea
-
Parkin, I. A., Koh, C., Tang, H., Robinson, S. J., Kagale, S., Clarke, W. E., Town, C. D., Nixon, J., Krishnakumar, V., Bidwell, S. L. et al. (2014) Transcriptome and methylome profiling reveals relics of genome dominance in the mesopolyploid Brassica oleracea. Genome Biol., 15, R77.
-
(2014)
Genome Biol.
, vol.15
, pp. R77
-
-
Parkin, I.A.1
Koh, C.2
Tang, H.3
Robinson, S.J.4
Kagale, S.5
Clarke, W.E.6
Town, C.D.7
Nixon, J.8
Krishnakumar, V.9
Bidwell, S.L.10
-
11
-
-
84878362237
-
The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color
-
Motamayor, J. C., Mockaitis, K., Schmutz, J., Haiminen, N., Livingstone, D. 3rd, Cornejo, O., Findley, S. D., Zheng, P., Utro, F., Royaert, S. et al. (2013) The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 14, r53.
-
(2013)
Genome Biol.
, vol.14
, pp. r53
-
-
Motamayor, J.C.1
Mockaitis, K.2
Schmutz, J.3
Haiminen, N.4
Livingstone, D.5
Cornejo, O.6
Findley, S.D.7
Zheng, P.8
Utro, F.9
Royaert, S.10
-
12
-
-
84878553926
-
The high-quality draft genome of peach (Prunus persica) identifies unique patterns of genetic diversity, domestication and genome evolution
-
International Peach Genome, I., Verde, I., Abbott, A. G., Scalabrin, S., Jung, S., Shu, S., Marroni, F., Zhebentyayeva, T., Dettori, M. T., Grimwood, J. et al. (2013) The high-quality draft genome of peach (Prunus persica) identifies unique patterns of genetic diversity, domestication and genome evolution. Nat. Genet., 45, 487-494.
-
(2013)
Nat. Genet.
, vol.45
, pp. 487-494
-
-
International Peach Genome, I,1
Verde, I.2
Abbott, A.G.3
Scalabrin, S.4
Jung, S.5
Shu, S.6
Marroni, F.7
Zhebentyayeva, T.8
Dettori, M.T.9
Grimwood, J.10
-
13
-
-
84890829647
-
The Amborella genome and the evolution of flowering plants
-
Amborella Genome, P. (2013) The Amborella genome and the evolution of flowering plants. Science, 342, 1241089.
-
(2013)
Science
, vol.342
, pp. 1241089
-
-
Amborella Genome, P.1
-
14
-
-
84890824399
-
Assembly and validation of the genome of the nonmodel basal angiosperm Amborella
-
Chamala, S., Chanderbali, A. S., Der, J. P., Lan, T., Walts, B., Albert, V. A., dePamphilis, C. W., Leebens-Mack, J., Rounsley, S., Schuster, S. C. et al. (2013) Assembly and validation of the genome of the nonmodel basal angiosperm Amborella. Science, 342, 1516-1517.
-
(2013)
Science
, vol.342
, pp. 1516-1517
-
-
Chamala, S.1
Chanderbali, A.S.2
Der, J.P.3
Lan, T.4
Walts, B.5
Albert, V.A.6
DePamphilis, C.W.7
Leebens-Mack, J.8
Rounsley, S.9
Schuster, S.C.10
-
15
-
-
34250689932
-
The tiny eukaryote Ostreococcus provides genomic insights into the paradox of plankton speciation
-
Palenik, B., Grimwood, J., Aerts, A., Rouze, P., Salamov, A., Putnam, N., Dupont, C., Jorgensen, R., Derelle, E., Rombauts, S. et al. (2007) The tiny eukaryote Ostreococcus provides genomic insights into the paradox of plankton speciation. Proc. Natl. Acad. Sci. U. S. A., 104, 7705-7710.
-
(2007)
Proc. Natl. Acad. Sci. U. S. A.
, vol.104
, pp. 7705-7710
-
-
Palenik, B.1
Grimwood, J.2
Aerts, A.3
Rouze, P.4
Salamov, A.5
Putnam, N.6
Dupont, C.7
Jorgensen, R.8
Derelle, E.9
Rombauts, S.10
-
16
-
-
84862234514
-
Ensembl Genomes: An integrative resource for genome-scale data from non-vertebrate species
-
Kersey, P. J., Staines, D. M., Lawson, D., Kulesha, E., Derwent, P., Humphrey, J. C., Hughes, D. S., Keenan, S., Kerhornou, A., Koscielny, G. et al. (2012) Ensembl Genomes: an integrative resource for genome-scale data from non-vertebrate species. Nucleic Acids Res., 40, D91-D97.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. D91-D97
-
-
Kersey, P.J.1
Staines, D.M.2
Lawson, D.3
Kulesha, E.4
Derwent, P.5
Humphrey, J.C.6
Hughes, D.S.7
Keenan, S.8
Kerhornou, A.9
Koscielny, G.10
-
17
-
-
0141815478
-
Evolution's cauldron: Duplication, deletion, and rearrangement in the mouse and human genomes
-
Kent, W. J., Baertsch, R., Hinrichs, A., Miller, W. and Haussler, D. (2003) Evolution's cauldron: duplication, deletion, and rearrangement in the mouse and human genomes. Proc. Natl. Acad. Sci. U. S. A., 100, 11484-11489.
-
(2003)
Proc. Natl. Acad. Sci. U. S. A.
, vol.100
, pp. 11484-11489
-
-
Kent, W.J.1
Baertsch, R.2
Hinrichs, A.3
Miller, W.4
Haussler, D.5
-
19
-
-
59949096873
-
EnsemblCompara GeneTrees: Complete, duplication-aware phylogenetic trees in vertebrates
-
Vilella, A. J., Severin, J., Ureta-Vidal, A., Heng, L., Durbin, R. and Birney, E. (2009) EnsemblCompara GeneTrees: complete, duplication-aware phylogenetic trees in vertebrates. Genome Res., 19, 327-335.
-
(2009)
Genome Res.
, vol.19
, pp. 327-335
-
-
Vilella, A.J.1
Severin, J.2
Ureta-Vidal, A.3
Heng, L.4
Durbin, R.5
Birney, E.6
-
20
-
-
84926443525
-
Nascent transcription affected by RNA polymerase IV in Zea mays
-
Erhard, K. F. Jr, Talbot, J. E., Deans, N. C., McClish, A. E. and Hollick, J. B. (2015) Nascent transcription affected by RNA polymerase IV in Zea mays. Genetics, 199, 1107-1125.
-
(2015)
Genetics
, vol.199
, pp. 1107-1125
-
-
Erhard, K.F.1
Talbot, J.E.2
Deans, N.C.3
McClish, A.E.4
Hollick, J.B.5
-
21
-
-
84884695071
-
The maize methylome influences mRNA splice sites and reveals widespread paramutation-like switches guided by small RNA
-
Regulski, M., Lu, Z., Kendall, J., Donoghue, M. T., Reinders, J., Llaca, V., Deschamps, S., Smith, A., Levy, D., McCombie, W. R. et al. (2013) The maize methylome influences mRNA splice sites and reveals widespread paramutation-like switches guided by small RNA. Genome Res., 23, 1651-1662.
-
(2013)
Genome Res.
, vol.23
, pp. 1651-1662
-
-
Regulski, M.1
Lu, Z.2
Kendall, J.3
Donoghue, M.T.4
Reinders, J.5
Llaca, V.6
Deschamps, S.7
Smith, A.8
Levy, D.9
McCombie, W.R.10
-
22
-
-
84893466287
-
MAKER-P: A tool kit for the rapid creation, management, and quality control of plant genome annotations
-
Campbell, M. S., Law, M., Holt, C., Stein, J. C., Moghe, G. D., Hufnagel, D. E., Lei, J., Achawanantakun, R., Jiao, D., Lawrence, C. J. et al. (2014) MAKER-P: a tool kit for the rapid creation, management, and quality control of plant genome annotations. Plant Physiol., 164, 513-524.
-
(2014)
Plant Physiol.
, vol.164
, pp. 513-524
-
-
Campbell, M.S.1
Law, M.2
Holt, C.3
Stein, J.C.4
Moghe, G.D.5
Hufnagel, D.E.6
Lei, J.7
Achawanantakun, R.8
Jiao, D.9
Lawrence, C.J.10
-
23
-
-
84920188663
-
Automated update, revision, and quality control of the maize genome annotations using MAKER-P improves the B73 RefGen v3 gene models and identifies new genes
-
Law, M., Childs, K. L., Campbell, M. S., Stein, J. C., Olson, A. J., Holt, C., Panchy, N., Lei, J., Jiao, D., Andorf, C. M. et al. (2015) Automated update, revision, and quality control of the maize genome annotations using MAKER-P improves the B73 RefGen v3 gene models and identifies new genes. Plant Physiol., 167, 25-39.
-
(2015)
Plant Physiol.
, vol.167
, pp. 25-39
-
-
Law, M.1
Childs, K.L.2
Campbell, M.S.3
Stein, J.C.4
Olson, A.J.5
Holt, C.6
Panchy, N.7
Lei, J.8
Jiao, D.9
Andorf, C.M.10
-
24
-
-
34547108086
-
Common sequence polymorphisms shaping genetic diversity in Arabidopsis thaliana
-
Clark, R. M., Schweikert, G., Toomajian, C., Ossowski, S., Zeller, G., Shinn, P., Warthmann, N., Hu, T. T., Fu, G., Hinds, D. A. et al. (2007) Common sequence polymorphisms shaping genetic diversity in Arabidopsis thaliana. Science, 317, 338-342.
-
(2007)
Science
, vol.317
, pp. 338-342
-
-
Clark, R.M.1
Schweikert, G.2
Toomajian, C.3
Ossowski, S.4
Zeller, G.5
Shinn, P.6
Warthmann, N.7
Hu, T.T.8
Fu, G.9
Hinds, D.A.10
-
25
-
-
77953233453
-
Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines
-
Atwell, S., Huang, Y. S., Vilhjalmsson, B. J., Willems, G., Horton, M., Li, Y., Meng, D., Platt, A., Tarone, A. M., Hu, T. T. et al. (2010) Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines. Nature, 465, 627-631.
-
(2010)
Nature
, vol.465
, pp. 627-631
-
-
Atwell, S.1
Huang, Y.S.2
Vilhjalmsson, B.J.3
Willems, G.4
Horton, M.5
Li, Y.6
Meng, D.7
Platt, A.8
Tarone, A.M.9
Hu, T.T.10
-
26
-
-
80053132716
-
Multiple reference genomes and transcriptomes for Arabidopsis thaliana
-
Gan, X., Stegle, O., Behr, J., Steffen, J. G., Drewe, P., Hildebrand, K. L., Lyngsoe, R., Schultheiss, S. J., Osborne, E. J., Sreedharan, V. T. et al. (2011) Multiple reference genomes and transcriptomes for Arabidopsis thaliana. Nature, 477, 419-423.
-
(2011)
Nature
, vol.477
, pp. 419-423
-
-
Gan, X.1
Stegle, O.2
Behr, J.3
Steffen, J.G.4
Drewe, P.5
Hildebrand, K.L.6
Lyngsoe, R.7
Schultheiss, S.J.8
Osborne, E.J.9
Sreedharan, V.T.10
-
27
-
-
84891809427
-
Sequencing and de novo transcriptome assembly of Brachypodium sylvaticum (Poaceae)
-
Fox, S. E., Preece, J., Kimbrel, J. A., Marchini, G. L., Sage, A., Youens-Clark, K., Cruzan, M. B. and Jaiswal, P. (2013) Sequencing and de novo transcriptome assembly of Brachypodium sylvaticum (Poaceae). Appl. Plant Sci., 1.
-
(2013)
Appl. Plant Sci.
, pp. 1
-
-
Fox, S.E.1
Preece, J.2
Kimbrel, J.A.3
Marchini, G.L.4
Sage, A.5
Youens-Clark, K.6
Cruzan, M.B.7
Jaiswal, P.8
-
28
-
-
84870265846
-
A physical, genetic and functional sequence assembly of the barley genome
-
International Barley Genome Sequencing, C., Mayer, K. F., Waugh, R., Brown, J. W., Schulman, A., Langridge, P., Platzer, M., Fincher, G. B., Muehlbauer, G. J., Sato, K. et al. (2012) A physical, genetic and functional sequence assembly of the barley genome. Nature, 491, 711-716.
-
(2012)
Nature
, vol.491
, pp. 711-716
-
-
International Barley Genome Sequencing, C,1
Mayer, K.F.2
Waugh, R.3
Brown, J.W.4
Schulman, A.5
Langridge, P.6
Platzer, M.7
Fincher, G.B.8
Muehlbauer, G.J.9
Sato, K.10
-
29
-
-
84901250709
-
De novo transcriptome assembly and analyses of gene expression during photomorphogenesis in diploid wheat Triticum monococcum
-
Fox, S. E., Geniza, M., Hanumappa, M., Naithani, S., Sullivan, C., Preece, J., Tiwari, V. K., Elser, J., Leonard, J. M., Sage, A. et al. (2014) De novo transcriptome assembly and analyses of gene expression during photomorphogenesis in diploid wheat Triticum monococcum. PLoS One, 9, e96855.
-
(2014)
PLoS One
, vol.9
, pp. e96855
-
-
Fox, S.E.1
Geniza, M.2
Hanumappa, M.3
Naithani, S.4
Sullivan, C.5
Preece, J.6
Tiwari, V.K.7
Elser, J.8
Leonard, J.M.9
Sage, A.10
-
30
-
-
68149145780
-
Genomewide SNP variation reveals relationships among landraces and modern varieties of rice
-
McNally, K. L., Childs, K. L., Bohnert, R., Davidson, R. M., Zhao, K., Ulat, V. J., Zeller, G., Clark, R. M., Hoen, D. R., Bureau, T. E. et al. (2009) Genomewide SNP variation reveals relationships among landraces and modern varieties of rice. Proc. Natl. Acad. Sci. U. S. A., 106, 12273-12278.
-
(2009)
Proc. Natl. Acad. Sci. U. S. A.
, vol.106
, pp. 12273-12278
-
-
McNally, K.L.1
Childs, K.L.2
Bohnert, R.3
Davidson, R.M.4
Zhao, K.5
Ulat, V.J.6
Zeller, G.7
Clark, R.M.8
Hoen, D.R.9
Bureau, T.E.10
-
31
-
-
77956295563
-
Genomic diversity and introgression in O. Sativa reveal the impact of domestication and breeding on the rice genome
-
Zhao, K., Wright, M., Kimball, J., Eizenga, G., McClung, A., Kovach, M., Tyagi, W., Ali, M. L., Tung, C. W., Reynolds, A. et al. (2010) Genomic diversity and introgression in O. sativa reveal the impact of domestication and breeding on the rice genome. PLoS One, 5, e10780.
-
(2010)
PLoS One
, vol.5
, pp. e10780
-
-
Zhao, K.1
Wright, M.2
Kimball, J.3
Eizenga, G.4
McClung, A.5
Kovach, M.6
Tyagi, W.7
Ali, M.L.8
Tung, C.W.9
Reynolds, A.10
-
32
-
-
85027940343
-
Exploring genetic variation in the tomato (Solanum section Lycopersicon) clade by whole-genome sequencing
-
Tomato Genome Sequencing, C., Aflitos, S., Schijlen, E., de Jong, H., de Ridder, D., Smit, S., Finkers, R., Wang, J., Zhang, G., Li, N. et al. (2014) Exploring genetic variation in the tomato (Solanum section Lycopersicon) clade by whole-genome sequencing. Plant J., 80, 136-148.
-
(2014)
Plant J.
, vol.80
, pp. 136-148
-
-
Tomato Genome Sequencing, C.1
Aflitos, S.2
Schijlen, E.3
De Jong, H.4
De Ridder, D.5
Smit, S.6
Finkers, R.7
Wang, J.8
Zhang, G.9
Li, N.10
-
33
-
-
81355147024
-
Genome-wide patterns of genetic variation in sweet and grain sorghum (Sorghum bicolor)
-
Zheng, L. Y., Guo, X. S., He, B., Sun, L. J., Peng, Y., Dong, S. S., Liu, T. F., Jiang, S., Ramachandran, S., Liu, C. M. et al. (2011) Genome-wide patterns of genetic variation in sweet and grain sorghum (Sorghum bicolor). Genome Biol., 12, R114.
-
(2011)
Genome Biol.
, vol.12
, pp. R114
-
-
Zheng, L.Y.1
Guo, X.S.2
He, B.3
Sun, L.J.4
Peng, Y.5
Dong, S.S.6
Liu, T.F.7
Jiang, S.8
Ramachandran, S.9
Liu, C.M.10
-
34
-
-
84872197099
-
Population genomic and genome-wide association studies of agroclimatic traits in sorghum
-
Morris, G. P., Ramu, P., Deshpande, S. P., Hash, C. T., Shah, T., Upadhyaya, H. D., Riera-Lizarazu, O., Brown, P. J., Acharya, C. B., Mitchell, S. E. et al. (2013) Population genomic and genome-wide association studies of agroclimatic traits in sorghum. Proc. Natl. Acad. Sci. U. S. A., 110, 453-458.
-
(2013)
Proc. Natl. Acad. Sci. U. S. A.
, vol.110
, pp. 453-458
-
-
Morris, G.P.1
Ramu, P.2
Deshpande, S.P.3
Hash, C.T.4
Shah, T.5
Upadhyaya, H.D.6
Riera-Lizarazu, O.7
Brown, P.J.8
Acharya, C.B.9
Mitchell, S.E.10
-
35
-
-
84893361639
-
Whole-genome sequencing reveals untapped genetic potential in Africa's indigenous cereal crop sorghum
-
Mace, E. S., Tai, S., Gilding, E. K., Li, Y., Prentis, P. J., Bian, L., Campbell, B. C., Hu, W., Innes, D. J., Han, X. et al. (2013) Whole-genome sequencing reveals untapped genetic potential in Africa's indigenous cereal crop sorghum. Nat. Commun., 4, 2320.
-
(2013)
Nat. Commun.
, vol.4
, pp. 2320
-
-
Mace, E.S.1
Tai, S.2
Gilding, E.K.3
Li, Y.4
Prentis, P.J.5
Bian, L.6
Campbell, B.C.7
Hu, W.8
Innes, D.J.9
Han, X.10
-
36
-
-
84939199382
-
A haplotype map of allohexaploid wheat reveals distinct patterns of selection on homoeologous genomes
-
Jordan, K. W., Wang, S., Lun, Y., Gardiner, L. J., MacLachlan, R., Hucl, P., Wiebe, K., Wong, D., Forrest, K. L., Consortium, I. et al. (2015) A haplotype map of allohexaploid wheat reveals distinct patterns of selection on homoeologous genomes. Genome Biol., 16, 48.
-
(2015)
Genome Biol.
, vol.16
, pp. 48
-
-
Jordan, K.W.1
Wang, S.2
Lun, Y.3
Gardiner, L.J.4
MacLachlan, R.5
Hucl, P.6
Wiebe, K.7
Wong, D.8
Forrest, K.L.9
Consortium, I.10
-
37
-
-
77952534535
-
Rapid genomic characterization of the genus vitis
-
Myles, S., Chia, J. M., Hurwitz, B., Simon, C., Zhong, G. Y., Buckler, E. and Ware, D. (2010) Rapid genomic characterization of the genus vitis. PLoS One, 5, e8219.
-
(2010)
PLoS One
, vol.5
, pp. e8219
-
-
Myles, S.1
Chia, J.M.2
Hurwitz, B.3
Simon, C.4
Zhong, G.Y.5
Buckler, E.6
Ware, D.7
-
38
-
-
70450204614
-
A first-generation haplotype map of maize
-
Gore, M. A., Chia, J. M., Elshire, R. J., Sun, Q., Ersoz, E. S., Hurwitz, B. L., Peiffer, J. A., McMullen, M. D., Grills, G. S., Ross-Ibarra, J. et al. (2009) A first-generation haplotype map of maize. Science, 326, 1115-1117.
-
(2009)
Science
, vol.326
, pp. 1115-1117
-
-
Gore, M.A.1
Chia, J.M.2
Elshire, R.J.3
Sun, Q.4
Ersoz, E.S.5
Hurwitz, B.L.6
Peiffer, J.A.7
McMullen, M.D.8
Grills, G.S.9
Ross-Ibarra, J.10
-
39
-
-
84863007735
-
Maize HapMap2 identifies extant variation from a genome in flux
-
Chia, J. M., Song, C., Bradbury, P. J., Costich, D., de Leon, N., Doebley, J., Elshire, R. J., Gaut, B., Geller, L., Glaubitz, J. C. et al. (2012) Maize HapMap2 identifies extant variation from a genome in flux. Nat. Genet., 44, 803-807.
-
(2012)
Nat. Genet.
, vol.44
, pp. 803-807
-
-
Chia, J.M.1
Song, C.2
Bradbury, P.J.3
Costich, D.4
De Leon, N.5
Doebley, J.6
Elshire, R.J.7
Gaut, B.8
Geller, L.9
Glaubitz, J.C.10
-
40
-
-
84870260198
-
Analysis of the bread wheat genome using whole-genome shotgun sequencing
-
Brenchley, R., Spannagl, M., Pfeifer, M., Barker, G. L., D'Amore, R., Allen, A. M., McKenzie, N., Kramer, M., Kerhornou, A., Bolser, D. et al. (2012) Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 491, 705-710.
-
(2012)
Nature
, vol.491
, pp. 705-710
-
-
Brenchley, R.1
Spannagl, M.2
Pfeifer, M.3
Barker, G.L.4
D'Amore, R.5
Allen, A.M.6
McKenzie, N.7
Kramer, M.8
Kerhornou, A.9
Bolser, D.10
-
41
-
-
84886793453
-
Anchoring and ordering NGS contig assemblies by population sequencing (POPSEQ)
-
Mascher, M., Muehlbauer, G. J., Rokhsar, D. S., Chapman, J., Schmutz, J., Barry, K., Munoz-Amatriain, M., Close, T. J., Wise, R. P., Schulman, A. H. et al. (2013) Anchoring and ordering NGS contig assemblies by population sequencing (POPSEQ). Plant J., 76, 718-727.
-
(2013)
Plant J.
, vol.76
, pp. 718-727
-
-
Mascher, M.1
Muehlbauer, G.J.2
Rokhsar, D.S.3
Chapman, J.4
Schmutz, J.5
Barry, K.6
Munoz-Amatriain, M.7
Close, T.J.8
Wise, R.P.9
Schulman, A.H.10
-
42
-
-
84870541655
-
Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley
-
Comadran, J., Kilian, B., Russell, J., Ramsay, L., Stein, N., Ganal, M., Shaw, P., Bayer, M., Thomas, W., Marshall, D. et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley. Nat. Genet., 44, 1388-1392.
-
(2012)
Nat. Genet.
, vol.44
, pp. 1388-1392
-
-
Comadran, J.1
Kilian, B.2
Russell, J.3
Ramsay, L.4
Stein, N.5
Ganal, M.6
Shaw, P.7
Bayer, M.8
Thomas, W.9
Marshall, D.10
-
43
-
-
77951943748
-
Ensembl variation resources
-
Chen, Y., Cunningham, F., Rios, D., McLaren, W. M., Smith, J., Pritchard, B., Spudich, G. M., Brent, S., Kulesha, E., Marin-Garcia, P. et al. (2010) Ensembl variation resources. BMC Genomics, 11, 293.
-
(2010)
BMC Genomics
, vol.11
, pp. 293
-
-
Chen, Y.1
Cunningham, F.2
Rios, D.3
McLaren, W.M.4
Smith, J.5
Pritchard, B.6
Spudich, G.M.7
Brent, S.8
Kulesha, E.9
Marin-Garcia, P.10
-
44
-
-
84891753483
-
The Reactome pathway knowledgebase
-
Croft, D., Mundo, A. F., Haw, R., Milacic, M., Weiser, J., Wu, G., Caudy, M., Garapati, P., Gillespie, M., Kamdar, M. R. et al. (2014) The Reactome pathway knowledgebase. Nucleic Acids Res., 42, D472-D477.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. D472-D477
-
-
Croft, D.1
Mundo, A.F.2
Haw, R.3
Milacic, M.4
Weiser, J.5
Wu, G.6
Caudy, M.7
Garapati, P.8
Gillespie, M.9
Kamdar, M.R.10
-
45
-
-
84881248613
-
A genome scale metabolic network for rice and accompanying analysis of tryptophan, auxin and serotonin biosynthesis regulation under biotic stress
-
Dharmawardhana, P., Ren, L., Amarasinghe, V., Monaco, M., Thomason, J., Ravenscroft, D., McCouch, S., Ware, D. and Jaiswal, P. (2013) A genome scale metabolic network for rice and accompanying analysis of tryptophan, auxin and serotonin biosynthesis regulation under biotic stress. Rice, 6, 15.
-
(2013)
Rice
, vol.6
, pp. 15
-
-
Dharmawardhana, P.1
Ren, L.2
Amarasinghe, V.3
Monaco, M.4
Thomason, J.5
Ravenscroft, D.6
McCouch, S.7
Ware, D.8
Jaiswal, P.9
-
46
-
-
24344439443
-
The oryza map alignment project: The golden path to unlocking the genetic potential of wild rice species
-
Wing, R. A., Ammiraju, J. S., Luo, M., Kim, H., Yu, Y., Kudrna, D., Goicoechea, J. L., Wang, W., Nelson, W., Rao, K. et al. (2005) The oryza map alignment project: the golden path to unlocking the genetic potential of wild rice species. Plant Mol. Biol., 59, 53-62.
-
(2005)
Plant Mol. Biol.
, vol.59
, pp. 53-62
-
-
Wing, R.A.1
Ammiraju, J.S.2
Luo, M.3
Kim, H.4
Yu, Y.5
Kudrna, D.6
Goicoechea, J.L.7
Wang, W.8
Nelson, W.9
Rao, K.10
-
47
-
-
84906972840
-
Construction of pseudomolecule sequences of the aus rice cultivar Kasalath for comparative genomics of Asian cultivated rice
-
Sakai, H., Kanamori, H., Arai-Kichise, Y., Shibata-Hatta, M., Ebana, K., Oono, Y., Kurita, K., Fujisawa, H., Katagiri, S., Mukai, Y. et al. (2014) Construction of pseudomolecule sequences of the aus rice cultivar Kasalath for comparative genomics of Asian cultivated rice. DNA Res., 21, 397-405.
-
(2014)
DNA Res.
, vol.21
, pp. 397-405
-
-
Sakai, H.1
Kanamori, H.2
Arai-Kichise, Y.3
Shibata-Hatta, M.4
Ebana, K.5
Oono, Y.6
Kurita, K.7
Fujisawa, H.8
Katagiri, S.9
Mukai, Y.10
-
48
-
-
84891768855
-
Expression Atlas update-A database of gene and transcript expression from microarray- and sequencing-based functional genomics experiments
-
Petryszak, R., Burdett, T., Fiorelli, B., Fonseca, N. A., Gonzalez-Porta, M., Hastings, E., Huber, W., Jupp, S., Keays, M., Kryvych, N. et al. (2014) Expression Atlas update-a database of gene and transcript expression from microarray- and sequencing-based functional genomics experiments. Nucleic Acids Res., 42, D926-D932.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. D926-D932
-
-
Petryszak, R.1
Burdett, T.2
Fiorelli, B.3
Fonseca, N.A.4
Gonzalez-Porta, M.5
Hastings, E.6
Huber, W.7
Jupp, S.8
Keays, M.9
Kryvych, N.10
-
49
-
-
84881220997
-
Maize metabolic network construction and transcriptome analysis
-
Monaco, M. K., Sen, T. Z., Dharmawardhana, P. D., Ren, L., Schaeffer, M., Naithani, S., Amarasinghe, V., Thomason, J., Harper, L. and Gardiner, J. (2013) Maize metabolic network construction and transcriptome analysis. Plant Genome, 6.
-
(2013)
Plant Genome
, pp. 6
-
-
Monaco, M.K.1
Sen, T.Z.2
Dharmawardhana, P.D.3
Ren, L.4
Schaeffer, M.5
Naithani, S.6
Amarasinghe, V.7
Thomason, J.8
Harper, L.9
Gardiner, J.10
-
50
-
-
84874265271
-
The plant ontology as a tool for comparative plant anatomy and genomic analyses
-
Cooper, L., Walls, R. L., Elser, J., Gandolfo, M. A., Stevenson, D. W., Smith, B., Preece, J., Athreya, B., Mungall, C. J., Rensing, S. et al. (2013) The plant ontology as a tool for comparative plant anatomy and genomic analyses. Plant Cell Physiol., 54, e1.
-
(2013)
Plant Cell Physiol.
, vol.54
, pp. e1
-
-
Cooper, L.1
Walls, R.L.2
Elser, J.3
Gandolfo, M.A.4
Stevenson, D.W.5
Smith, B.6
Preece, J.7
Athreya, B.8
Mungall, C.J.9
Rensing, S.10
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