메뉴 건너뛰기




Volumn 65, Issue 4, 2016, Pages 700-710

Estimating the effect of competition on trait evolution using maximum likelihood inference

Author keywords

Adaptive radiation; Anolis; Community phylogenetics; Interspecific competition; Maximum likelihood; Phylogenetic comparativemethods; Trait evolution

Indexed keywords

ANIMAL; BIOLOGICAL MODEL; CLASSIFICATION; COMPETITIVE BEHAVIOR; COMPUTER SIMULATION; EVOLUTION; GEOGRAPHY; LIZARD; PHENOTYPE; PHYLOGENY; PHYSIOLOGY; STATISTICAL MODEL;

EID: 84979224127     PISSN: 10635157     EISSN: 1076836X     Source Type: Journal    
DOI: 10.1093/sysbio/syw020     Document Type: Article
Times cited : (67)

References (73)
  • 2
    • 0038325772 scopus 로고    scopus 로고
    • Testing for phylogenetic signal in comparative data: Behavioral traits are more labile
    • Blomberg S.P., Garland T., Ives A.R. 2003. Testing for phylogenetic signal in comparative data: behavioral traits are more labile. Evolution 57:717-745.
    • (2003) Evolution , vol.57 , pp. 717-745
    • Blomberg, S.P.1    Garland, T.2    Ives, A.R.3
  • 3
    • 84863435149 scopus 로고    scopus 로고
    • Is your phylogeny informative? Measuring the power of comparative methods
    • Boettiger C., Coop G., Ralph P. 2012. Is your phylogeny informative? Measuring the power of comparative methods. Evolution 66: 2240-2251.
    • (2012) Evolution , vol.66 , pp. 2240-2251
    • Boettiger, C.1    Coop, G.2    Ralph, P.3
  • 8
    • 0001606438 scopus 로고
    • Diversity and the coevolution of competitors, or the ghost of competition past
    • Connell, J. H. 1980. Diversity and the coevolution of competitors, or the ghost of competition past. Oikos 35:131-138.
    • (1980) Oikos , vol.35 , pp. 131-138
    • Connell, J.H.1
  • 9
    • 3042750437 scopus 로고    scopus 로고
    • Sunderland (MA): Sinauer Associates
    • Coyne J.A., Orr H.A. 2004. Speciation. Sunderland (MA): Sinauer Associates.
    • (2004) Speciation
    • Coyne, J.A.1    Orr, H.A.2
  • 11
    • 0000110035 scopus 로고
    • Speciation as a stage in evolutionary divergence
    • Dobzhansky T. 1940. Speciation as a stage in evolutionary divergence. Am. Nat. 74:312-321.
    • (1940) Am. Nat. , vol.74 , pp. 312-321
    • Dobzhansky, T.1
  • 12
    • 82855161365 scopus 로고    scopus 로고
    • A novel comparative method for identifying shifts in the rate of character evolution on trees
    • Eastman J.M., Alfaro M.E., Joyce P., Hipp A.L., Harmon L.J. 2011. A novel comparative method for identifying shifts in the rate of character evolution on trees. Evolution 65:3578-3589.
    • (2011) Evolution , vol.65 , pp. 3578-3589
    • Eastman, J.M.1    Alfaro, M.E.2    Joyce, P.3    Hipp, A.L.4    Harmon, L.J.5
  • 13
    • 0002890098 scopus 로고
    • Competition and the structure of ecological communities
    • Elton C. 1946. Competition and the structure of ecological communities. J. Anim. Ecol. 15:54-68.
    • (1946) J. Anim. Ecol. , vol.15 , pp. 54-68
    • Elton, C.1
  • 14
    • 0024181337 scopus 로고
    • Phylogenies and quantitative characters
    • Felsenstein. 1988. Phylogenies and quantitative characters. Annu. Rev. Ecol. Evol. Syst. 19:445-471.
    • (1988) Annu. Rev. Ecol. Evol. Syst. , vol.19 , pp. 445-471
    • Felsenstein1
  • 17
    • 0001992134 scopus 로고
    • Convergent and divergent character displacement
    • Grant P.R. 1972. Convergent and divergent character displacement. Biol. J. Linn. Soc. 4:39-68.
    • (1972) Biol. J. Linn. Soc. , vol.4 , pp. 39-68
    • Grant, P.R.1
  • 19
    • 0036501720 scopus 로고    scopus 로고
    • Adaptive radiation of Darwin's finches: Recent data help explain how this famous group of Galápagos birds evolved, although gaps in our understanding remain
    • Grant P.R., Grant B.R. 2002. Adaptive radiation of Darwin's finches: recent data help explain how this famous group of Galápagos birds evolved, although gaps in our understanding remain. Am. Sci. 90:130-139.
    • (2002) Am. Sci. , vol.90 , pp. 130-139
    • Grant, P.R.1    Grant, B.R.2
  • 22
    • 70350303363 scopus 로고    scopus 로고
    • The role of interspecific interference competition in character displacement and the evolution of competitor recognition
    • Grether G.F., Losin N., Anderson C.N., Okamoto K. 2009. The role of interspecific interference competition in character displacement and the evolution of competitor recognition. Biol. Rev. 84: 617-635.
    • (2009) Biol. Rev. , vol.84 , pp. 617-635
    • Grether, G.F.1    Losin, N.2    Anderson, C.N.3    Okamoto, K.4
  • 23
    • 53349128037 scopus 로고    scopus 로고
    • Reproductive interference between animal species
    • Gröning J., Hochkirch A. 2008. Reproductive interference between animal species. Q. Rev. Biol. 83:257-282.
    • (2008) Q. Rev. Biol. , vol.83 , pp. 257-282
    • Gröning, J.1    Hochkirch, A.2
  • 24
    • 0029660868 scopus 로고    scopus 로고
    • Translating between microevolutionary process and macroevolutionary patterns: The correlation structure of interspecific data
    • Hansen T.F.,Martins E.P. 1996. Translating between microevolutionary process and macroevolutionary patterns: the correlation structure of interspecific data. Evolution 50:1404-1417.
    • (1996) Evolution , vol.50 , pp. 1404-1417
    • Hansen, T.F.1    Martins, E.P.2
  • 26
    • 0043023771 scopus 로고    scopus 로고
    • Tempo and mode of evolutionary radiation in iguanian lizards
    • Harmon L.J., Schulte J.A., Larson A., Losos J.B. 2003. Tempo and mode of evolutionary radiation in iguanian lizards. Science 301: 961-964.
    • (2003) Science , vol.301 , pp. 961-964
    • Harmon, L.J.1    Schulte, J.A.2    Larson, A.3    Losos, J.B.4
  • 28
    • 0031284559 scopus 로고    scopus 로고
    • A comparison of evolutionary radiations in mainland and Caribbean Anolis lizards
    • Irschick D.J., Vitt L.J., Zani P.A., Losos J.B. 1997. A comparison of evolutionary radiations in mainland and Caribbean Anolis lizards. Ecology 78:2191-2203.
    • (1997) Ecology , vol.78 , pp. 2191-2203
    • Irschick, D.J.1    Vitt, L.J.2    Zani, P.A.3    Losos, J.B.4
  • 29
    • 34547686024 scopus 로고    scopus 로고
    • Trait evolution, community assembly, and the phylogenetic structure of ecological communities
    • Kraft N.J.B., Cornwell W.K., Webb C.O., Ackerly D.D. 2007. Trait evolution, community assembly, and the phylogenetic structure of ecological communities. Am. Nat. 170:271-283.
    • (2007) Am. Nat. , vol.170 , pp. 271-283
    • Kraft, N.J.B.1    Cornwell, W.K.2    Webb, C.O.3    Ackerly, D.D.4
  • 30
    • 84873059898 scopus 로고    scopus 로고
    • Simulation-based likelihood approach for evolutionary models of phenotypic traits on phylogeny
    • Kutsukake N., Innan H. 2013. Simulation-based likelihood approach for evolutionary models of phenotypic traits on phylogeny. Evolution 67:355-367.
    • (2013) Evolution , vol.67 , pp. 355-367
    • Kutsukake, N.1    Innan, H.2
  • 31
    • 0017144189 scopus 로고
    • Natural selection and random genetic drift in phenotypic evolution
    • Lande R. 1976. Natural selection and random genetic drift in phenotypic evolution. Evolution. 30:314-334.
    • (1976) Evolution , vol.30 , pp. 314-334
    • Lande, R.1
  • 32
    • 84886001628 scopus 로고    scopus 로고
    • Bayesian analysis of biogeography when the number of areas is large
    • Landis M.J., Matzke N.J., Moore B.R., Huelsenbeck J.P. 2013. Bayesian analysis of biogeography when the number of areas is large. Syst. Biol. 62:789-804.
    • (2013) Syst. Biol. , vol.62 , pp. 789-804
    • Landis, M.J.1    Matzke, N.J.2    Moore, B.R.3    Huelsenbeck, J.P.4
  • 33
    • 0025662583 scopus 로고
    • The evolution of form and function: Morphology and locomotor performance in West Indian
    • Losos J.B. 1990. The evolution of form and function: morphology and locomotor performance in West Indian Anolis lizards. 44: 1189-1203.
    • (1990) Anolis Lizards. , vol.44 , pp. 1189-1203
    • Losos, J.B.1
  • 34
    • 0028191616 scopus 로고
    • Integrative approaches to evolutionary ecology Anolis lizards as model systems
    • Losos J.B. 1994. Integrative approaches to evolutionary ecology: Anolis lizards as model systems. Annu. Rev. Ecol. Syst. 25:467-493.
    • (1994) Annu. Rev. Ecol. Syst. , vol.25 , pp. 467-493
    • Losos, J.B.1
  • 36
    • 60149108989 scopus 로고    scopus 로고
    • Adaptation and diversification on islands
    • Losos J.B., Ricklefs R.E. 2009.Adaptation and diversification on islands. Nature 457:830-836.
    • (2009) Nature , vol.457 , pp. 830-836
    • Losos, J.B.1    Ricklefs, R.E.2
  • 38
    • 84880406721 scopus 로고    scopus 로고
    • Exceptional convergence on the macroevolutionary landscape in island lizard radiations
    • Mahler D.L., Ingram T., Revell L.J., Losos J.B. 2013. Exceptional convergence on the macroevolutionary landscape in island lizard radiations. Science 341:292-295.
    • (2013) Science , vol.341 , pp. 292-295
    • Mahler, D.L.1    Ingram, T.2    Revell, L.J.3    Losos, J.B.4
  • 39
    • 77956419722 scopus 로고    scopus 로고
    • Ecological opportunity and the rate of morphological evolution in the diversification of greater Antillean anoles
    • Mahler D.L., Revell L.J., Glor R.E., Losos J.B. 2010. Ecological opportunity and the rate of morphological evolution in the diversification of greater Antillean anoles. Evolution 64:2731-2745.
    • (2010) Evolution , vol.64 , pp. 2731-2745
    • Mahler, D.L.1    Revell, L.J.2    Glor, R.E.3    Losos, J.B.4
  • 40
    • 0030619995 scopus 로고    scopus 로고
    • Phylogenies and the comparative method: A general approach to incorporating phylogenetic information into the analysis of interspecific data
    • Martins E.P., Hansen T.F. 1997. Phylogenies and the comparative method: a general approach to incorporating phylogenetic information into the analysis of interspecific data. Am. Nat. 149: 646-667.
    • (1997) Am. Nat. , vol.149 , pp. 646-667
    • Martins, E.P.1    Hansen, T.F.2
  • 41
    • 84921863746 scopus 로고    scopus 로고
    • Model selection in historical biogeography reveals that founder-event speciation is a crucial process in island clades
    • Matzke, N. 2014. Model selection in historical biogeography reveals that founder-event speciation is a crucial process in island clades. Syst. Biol. 63:951-970.
    • (2014) Syst. Biol. , vol.63 , pp. 951-970
    • Matzke, N.1
  • 43
    • 84897062906 scopus 로고    scopus 로고
    • Why does diversification slowdown?
    • Moen D., Morlon H. 2014.Why does diversification slowdown? Trends Ecol. Evol. 29:190-197.
    • (2014) Trends Ecol. Evol. , vol.29 , pp. 190-197
    • Moen, D.1    Morlon, H.2
  • 46
    • 84916886531 scopus 로고    scopus 로고
    • Predicting rates of interspecific interaction from phylogenetic trees
    • Nuismer S.L., Harmon L.J. 2015. Predicting rates of interspecific interaction from phylogenetic trees. Ecol. Lett. 18:17-27.
    • (2015) Ecol. Lett. , vol.18 , pp. 17-27
    • Nuismer, S.L.1    Harmon, L.J.2
  • 47
    • 80052271969 scopus 로고    scopus 로고
    • Contrasting theory with the empirical data of species recognition
    • Ord T.J., King L., Young A.R. 2011. Contrasting theory with the empirical data of species recognition. Evolution 65:2572-2591.
    • (2011) Evolution , vol.65 , pp. 2572-2591
    • Ord, T.J.1    King, L.2    Young, A.R.3
  • 48
    • 70349482702 scopus 로고    scopus 로고
    • Species identity cues in animal communication
    • Ord T.J., Stamps J.A. 2009. Species identity cues in animal communication. Am. Nat. 174:585-593.
    • (2009) Am. Nat. , vol.174 , pp. 585-593
    • Ord, T.J.1    Stamps, J.A.2
  • 49
    • 0020000571 scopus 로고
    • Resource partitioning and interspecific competition in two two-species insular Anolis lizard communities
    • Pacala S., Roughgarden J. 1982. Resource partitioning and interspecific competition in two two-species insular Anolis lizard communities. Science 217:444-446.
    • (1982) Science , vol.217 , pp. 444-446
    • Pacala, S.1    Roughgarden, J.2
  • 50
    • 33646735054 scopus 로고    scopus 로고
    • Bayesian analysis of correlated evolution of discrete characters by reversible-jump Markov chain Monte Carlo
    • Pagel M., Meade A. 2006. Bayesian analysis of correlated evolution of discrete characters by reversible-jump Markov chain Monte Carlo. Am. Nat. 167:808-825.
    • (2006) Am. Nat. , vol.167 , pp. 808-825
    • Pagel, M.1    Meade, A.2
  • 52
    • 84879308395 scopus 로고    scopus 로고
    • An integrative view of phylogenetic comparative methods: Connections to population genetics, community ecology, and paleobiology
    • Pennell M.W., Harmon L.J. 2013. An integrative view of phylogenetic comparative methods: connections to population genetics, community ecology, and paleobiology. Ann. N. Y. Acad. Sci. 1289:90-105.
    • (2013) Ann. N. Y. Acad. Sci. , vol.1289 , pp. 90-105
    • Pennell, M.W.1    Harmon, L.J.2
  • 53
    • 70349330222 scopus 로고    scopus 로고
    • Character displacement: Ecological and reproductive responses to a common evolutionary problem
    • Pfennig K.S., Pfennig D.W. 2009. Character displacement: ecological and reproductive responses to a common evolutionary problem. Q. Rev. Biol. 84:253-276.
    • (2009) Q. Rev. Biol. , vol.84 , pp. 253-276
    • Pfennig, K.S.1    Pfennig, D.W.2
  • 54
    • 84896270571 scopus 로고    scopus 로고
    • Automatic detection of key innovations, rate shifts, and diversity-dependence on phylogenetic trees
    • Rabosky D.L. 2014. Automatic detection of key innovations, rate shifts, and diversity-dependence on phylogenetic trees. PLoS One 9:e89543.
    • (2014) PLoS One , vol.9 , pp. e89543
    • Rabosky, D.L.1
  • 55
    • 78650630261 scopus 로고    scopus 로고
    • Equilibrium speciation dynamics in a model adaptive radiation of island lizards
    • Rabosky D.L., Glor R.E. 2010. Equilibrium speciation dynamics in a model adaptive radiation of island lizards. Proc. Natl. Acad. Sci. 107:22178-22183.
    • (2010) Proc. Natl. Acad. Sci. , vol.107 , pp. 22178-22183
    • Rabosky, D.L.1    Glor, R.E.2
  • 56
    • 70350280178 scopus 로고    scopus 로고
    • Size-correction and principal components for interspecific comparative studies
    • Revell L.J. 2009. Size-correction and principal components for interspecific comparative studies. Evolution 63:3258-3268.
    • (2009) Evolution , vol.63 , pp. 3258-3268
    • Revell, L.J.1
  • 57
    • 84867364321 scopus 로고    scopus 로고
    • Phytools: An R package for phylogenetic comparative biology (and other things)
    • Revell L.J. 2012. phytools: an R package for phylogenetic comparative biology (and other things). Methods Ecol. Evol. 3:217-223.
    • (2012) Methods Ecol. Evol. , vol.3 , pp. 217-223
    • Revell, L.J.1
  • 59
    • 15444381264 scopus 로고    scopus 로고
    • Ecological speciation
    • Rundle H.D.,Nosil P. 2005. Ecological speciation. Ecol. Lett. 8:336-352.
    • (2005) Ecol. Lett. , vol.8 , pp. 336-352
    • Rundle, H.D.1    Nosil, P.2
  • 61
    • 0001531750 scopus 로고
    • Size patterns in West Indian Anolis lizards. II. Correlations with the sizes of particular sympatric speciesdisplacement and convergence
    • Schoener T.W. 1970. Size patterns in West Indian Anolis lizards. II. Correlations with the sizes of particular sympatric speciesdisplacement and convergence. Am. Nat. 104:155-174.
    • (1970) Am. Nat. , vol.104 , pp. 155-174
    • Schoener, T.W.1
  • 63
    • 84857692151 scopus 로고    scopus 로고
    • Fitting models of continuous trait evolution to incompletely sampled comparative data using approximate Bayesian computation
    • Slater G.J., Harmon L.J., Wegmann D., Joyce P., Revell L.J., Alfaro M.E. 2012b. Fitting models of continuous trait evolution to incompletely sampled comparative data using approximate Bayesian computation. Evolution 66:752-762.
    • (2012) Evolution , vol.66 , pp. 752-762
    • Slater, G.J.1    Harmon, L.J.2    Wegmann, D.3    Joyce, P.4    Revell, L.J.5    Alfaro, M.E.6
  • 64
    • 84899026322 scopus 로고    scopus 로고
    • Robust regression and posterior predictive simulation increase power to detect early bursts of trait evolution
    • Slater G.J., Pennell M.W. 2014. Robust regression and posterior predictive simulation increase power to detect early bursts of trait evolution. Syst. Biol. 63:293-308.
    • (2014) Syst. Biol. , vol.63 , pp. 293-308
    • Slater, G.J.1    Pennell, M.W.2
  • 65
    • 77953162975 scopus 로고    scopus 로고
    • Solving differential equations in R: Package deSolve
    • Soetaert K., Petzoldt T., Setzer R.W. 2010. Solving differential equations in R: package deSolve. J. Stat. Softw. 33:1-25.
    • (2010) J. Stat. Softw. , vol.33 , pp. 1-25
    • Soetaert, K.1    Petzoldt, T.2    Setzer, R.W.3
  • 67
    • 84862247666 scopus 로고    scopus 로고
    • MOTMOT: Models of trait macroevolution on trees
    • Thomas G.H., Freckleton R.P. 2012. MOTMOT: models of trait macroevolution on trees. Methods Ecol. Evol. 3:145-151.
    • (2012) Methods Ecol. Evol. , vol.3 , pp. 145-151
    • Thomas, G.H.1    Freckleton, R.P.2
  • 68
    • 84937034669 scopus 로고    scopus 로고
    • Comparative analysis of principal components can be misleading
    • Uyeda J.C., Caetano D.S., Pennell M.W. 2015. Comparative analysis of principal components can be misleading. Syst. Biol. 64:677-689.
    • (2015) Syst. Biol. , vol.64 , pp. 677-689
    • Uyeda, J.C.1    Caetano, D.S.2    Pennell, M.W.3
  • 69
    • 84913549686 scopus 로고    scopus 로고
    • A novel Bayesian method for inferring and interpreting the dynamics of adaptive landscapes from phylogenetic comparative data
    • Uyeda J.C., Harmon L.J. 2014. A novel Bayesian method for inferring and interpreting the dynamics of adaptive landscapes from phylogenetic comparative data. Syst. Biol. 63:902-918.
    • (2014) Syst. Biol. , vol.63 , pp. 902-918
    • Uyeda, J.C.1    Harmon, L.J.2
  • 72
    • 84873057838 scopus 로고    scopus 로고
    • Diversity-dependent cladogenesis and trait evolution in the adaptive radiation of the auks (Aves: Alcidae)
    • Weir J.T., Mursleen S. 2013. Diversity-dependent cladogenesis and trait evolution in the adaptive radiation of the auks (Aves: Alcidae). Evolution 67:403-416.
    • (2013) Evolution , vol.67 , pp. 403-416
    • Weir, J.T.1    Mursleen, S.2
  • 73
    • 0003113101 scopus 로고
    • The origin of faunas. Evolution of lizard congeners in a complex island fauna: A trial analysis
    • Williams E.E. 1972. The origin of faunas. Evolution of lizard congeners in a complex island fauna: a trial analysis. Evol. Biol. 6:47-89.
    • (1972) Evol. Biol. , vol.6 , pp. 47-89
    • Williams, E.E.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.