-
2
-
-
78751638661
-
Engineering cyanobacteria to generate high-value products
-
D. C. Ducat J. C. Way P. A. Silver Engineering cyanobacteria to generate high-value products Trends Biotechnol. 2011 29 95 103 10.1016/j.tibtech.2010.12.003
-
(2011)
Trends Biotechnol.
, vol.29
, pp. 95-103
-
-
Ducat, D.C.1
Way, J.C.2
Silver, P.A.3
-
3
-
-
84867640076
-
Cyanobacterial biofuel production
-
I. M. Machado S. Atsumi Cyanobacterial biofuel production J. Biotechnol. 2012 162 50 56 10.1016/j.jbiotec.2012.03.005
-
(2012)
J. Biotechnol.
, vol.162
, pp. 50-56
-
-
Machado, I.M.1
Atsumi, S.2
-
4
-
-
79953139204
-
Engineering cyanobacteria for fuels and chemicals production
-
J. Zhou Y. Li Engineering cyanobacteria for fuels and chemicals production Protein Cell 2010 1 207 210 10.1007/s13238-010-0043-9
-
(2010)
Protein Cell
, vol.1
, pp. 207-210
-
-
Zhou, J.1
Li, Y.2
-
6
-
-
84867640438
-
Bioengineering of carbon fixation, biofuels, and biochemicals in cyanobacteria and plants
-
L. Rosgaard A. J. dePorcellinis J. H. Jacobsen N. U. Frigaard Y. Sakuragi Bioengineering of carbon fixation, biofuels, and biochemicals in cyanobacteria and plants J. Biotechnol. 2012 162 134 147 10.1016/j.jbiotec.2012.05.006
-
(2012)
J. Biotechnol.
, vol.162
, pp. 134-147
-
-
Rosgaard, L.1
DePorcellinis, A.J.2
Jacobsen, J.H.3
Frigaard, N.U.4
Sakuragi, Y.5
-
7
-
-
81155161902
-
Cyanobacterial genomics for ecology and biotechnology
-
W. R. Hess Cyanobacterial genomics for ecology and biotechnology Curr. Opin. Microbiol. 2011 14 608 614 10.1016/j.mib.2011.07.024
-
(2011)
Curr. Opin. Microbiol.
, vol.14
, pp. 608-614
-
-
Hess, W.R.1
-
8
-
-
84988515801
-
Cyanobacterial biofuels: New insights and strain design strategies revealed by computational modeling
-
P. Erdrich H. Knoop R. Steuer S. Klamt Cyanobacterial biofuels: new insights and strain design strategies revealed by computational modeling Microb. Cell Fact. 2014 13 128 10.1186/s12934-014-0128-x
-
(2014)
Microb. Cell Fact.
, vol.13
, pp. 128
-
-
Erdrich, P.1
Knoop, H.2
Steuer, R.3
Klamt, S.4
-
9
-
-
84879517799
-
Et al., Flux balance analysis of cyanobacterial metabolism: The metabolic network of Synechocystis sp. PCC 6803
-
H. Knoop M. Grundel Y. Zilliges R. Lehmann S. Hoffmann W. Lockau et al., Flux balance analysis of cyanobacterial metabolism: the metabolic network of Synechocystis sp. PCC 6803 PLoS Comput. Biol. 2013 9 e1003081 10.1371/journal.pcbi.1003081
-
(2013)
PLoS Comput. Biol.
, vol.9
, pp. e1003081
-
-
Knoop, H.1
Grundel, M.2
Zilliges, Y.3
Lehmann, R.4
Hoffmann, S.5
Lockau, W.6
-
10
-
-
71849086611
-
Direct photosynthetic recycling of carbon dioxide to isobutyraldehyde
-
S. Atsumi W. Higashide J. C. Liao Direct photosynthetic recycling of carbon dioxide to isobutyraldehyde Nat. Biotechnol. 2009 27 1177 1180 10.1038/nbt.1586
-
(2009)
Nat. Biotechnol.
, vol.27
, pp. 1177-1180
-
-
Atsumi, S.1
Higashide, W.2
Liao, J.C.3
-
11
-
-
79955565417
-
Fatty acid production in genetically modified cyanobacteria
-
X. Liu J. Sheng R. Curtiss 3rd Fatty acid production in genetically modified cyanobacteria Proc. Natl. Acad. Sci. U. S. A. 2011 108 6899 6904 10.1073/pnas.1103014108
-
(2011)
Proc. Natl. Acad. Sci. U. S. A.
, vol.108
, pp. 6899-6904
-
-
Liu, X.1
Sheng, J.2
Curtiss, R.3
-
12
-
-
70449336249
-
Engineering a platform for photosynthetic isoprene production in cyanobacteria, using Synechocystis as the model organism
-
P. Lindberg S. Park A. Melis Engineering a platform for photosynthetic isoprene production in cyanobacteria, using Synechocystis as the model organism Metab. Eng. 2010 12 70 79 10.1016/j.ymben.2009.10.001
-
(2010)
Metab. Eng.
, vol.12
, pp. 70-79
-
-
Lindberg, P.1
Park, S.2
Melis, A.3
-
14
-
-
84859950774
-
ATP drives direct photosynthetic production of 1-butanol in cyanobacteria
-
E. I. Lan J. C. Liao ATP drives direct photosynthetic production of 1-butanol in cyanobacteria Proc. Natl. Acad. Sci. U. S. A. 2012 109 6018 6023 10.1073/pnas.1200074109
-
(2012)
Proc. Natl. Acad. Sci. U. S. A.
, vol.109
, pp. 6018-6023
-
-
Lan, E.I.1
Liao, J.C.2
-
17
-
-
0032976323
-
Ethanol synthesis by genetic engineering in cyanobacteria
-
M. D. Deng J. R. Coleman Ethanol synthesis by genetic engineering in cyanobacteria Appl. Environ. Microbiol. 1999 65 523 528
-
(1999)
Appl. Environ. Microbiol.
, vol.65
, pp. 523-528
-
-
Deng, M.D.1
Coleman, J.R.2
-
18
-
-
67649388222
-
Characterization of an alcohol dehydrogenase from the Cyanobacterium Synechocystis sp. Strain PCC 6803 that responds to environmental stress conditions via the Hik34-Rre1 two-component system
-
R. Vidal L. Lopez-Maury M. G. Guerrero F. J. Florencio Characterization of an alcohol dehydrogenase from the Cyanobacterium Synechocystis sp. strain PCC 6803 that responds to environmental stress conditions via the Hik34-Rre1 two-component system J. Bacteriol. 2009 191 4383 4391 10.1128/jb.00183-09
-
(2009)
J. Bacteriol.
, vol.191
, pp. 4383-4391
-
-
Vidal, R.1
Lopez-Maury, L.2
Guerrero, M.G.3
Florencio, F.J.4
-
19
-
-
84949803685
-
A computational analysis of stoichiometric constraints and trade-offs in cyanobacterial biofuel production
-
H. Knoop R. Steuer A computational analysis of stoichiometric constraints and trade-offs in cyanobacterial biofuel production Front. Bioeng. Biotechnol. 2015 3 47 10.3389/fbioe.2015.00047
-
(2015)
Front. Bioeng. Biotechnol.
, vol.3
, pp. 47
-
-
Knoop, H.1
Steuer, R.2
-
20
-
-
28844474830
-
Flux balance analysis of photoautotrophic metabolism
-
A. A. Shastri J. A. Morgan Flux balance analysis of photoautotrophic metabolism Biotechnol. Prog. 2005 21 1617 1626 10.1021/bp050246d
-
(2005)
Biotechnol. Prog.
, vol.21
, pp. 1617-1626
-
-
Shastri, A.A.1
Morgan, J.A.2
-
21
-
-
77956710803
-
The Metabolic Network of Synechocystis sp. PCC 6803: Systemic Properties of Autotrophic Growth
-
H. Knoop Y. Zilliges W. Lockau R. Steuer The Metabolic Network of Synechocystis sp. PCC 6803: Systemic Properties of Autotrophic Growth Plant Physiol. 2010 154 410 422 10.1104/pp.110.157198
-
(2010)
Plant Physiol.
, vol.154
, pp. 410-422
-
-
Knoop, H.1
Zilliges, Y.2
Lockau, W.3
Steuer, R.4
-
23
-
-
57049098094
-
Metabolic engineering of microorganisms for biofuels production: From bugs to synthetic biology to fuels
-
S. K. Lee H. Chou T. S. Ham T. S. Lee J. D. Keasling Metabolic engineering of microorganisms for biofuels production: from bugs to synthetic biology to fuels Curr. Opin. Biotechnol. 2008 19 556 563 10.1016/j.copbio.2008.10.014
-
(2008)
Curr. Opin. Biotechnol.
, vol.19
, pp. 556-563
-
-
Lee, S.K.1
Chou, H.2
Ham, T.S.3
Lee, T.S.4
Keasling, J.D.5
-
24
-
-
84883800240
-
Development of Synechocystis sp. PCC 6803 as a phototrophic cell factory
-
Y. Yu L. You D. Liu W. Hollinshead Y. J. Tang F. Zhang Development of Synechocystis sp. PCC 6803 as a phototrophic cell factory Mar. Drugs 2013 11 2894 2916 10.3390/md11082894
-
(2013)
Mar. Drugs
, vol.11
, pp. 2894-2916
-
-
Yu, Y.1
You, L.2
Liu, D.3
Hollinshead, W.4
Tang, Y.J.5
Zhang, F.6
-
25
-
-
84859358212
-
Modelling cyanobacteria: From metabolism to integrative models of phototrophic growth
-
R. Steuer H. Knoop R. Machne Modelling cyanobacteria: from metabolism to integrative models of phototrophic growth J. Exp. Bot. 2012 63 2259 2274 10.1093/jxb/ers018
-
(2012)
J. Exp. Bot.
, vol.63
, pp. 2259-2274
-
-
Steuer, R.1
Knoop, H.2
Machne, R.3
-
26
-
-
77949495880
-
Predicting metabolic engineering knockout strategies for chemical production: Accounting for competing pathways
-
N. Tepper T. Shlomi Predicting metabolic engineering knockout strategies for chemical production: accounting for competing pathways Bioinformatics 2010 26 536 543 10.1093/bioinformatics/btp704
-
(2010)
Bioinformatics
, vol.26
, pp. 536-543
-
-
Tepper, N.1
Shlomi, T.2
-
28
-
-
84901339219
-
Et al., Constraint-based modeling of carbon fixation and the energetics of electron transfer in Geobacter metallireducens
-
A. M. Feist H. Nagarajan A. E. Rotaru P. L. Tremblay T. Zhang K. P. Nevin et al., Constraint-based modeling of carbon fixation and the energetics of electron transfer in Geobacter metallireducens PLoS Comput. Biol. 2014 10 e1003575 10.1371/journal.pcbi.1003575
-
(2014)
PLoS Comput. Biol.
, vol.10
, pp. e1003575
-
-
Feist, A.M.1
Nagarajan, H.2
Rotaru, A.E.3
Tremblay, P.L.4
Zhang, T.5
Nevin, K.P.6
-
30
-
-
73149122136
-
Applications of genome-scale metabolic reconstructions
-
M. A. Oberhardt B. O. Palsson J. A. Papin Applications of genome-scale metabolic reconstructions Mol. Syst. Biol. 2009 5 320 10.1038/msb.2009.77
-
(2009)
Mol. Syst. Biol.
, vol.5
, pp. 320
-
-
Oberhardt, M.A.1
Palsson, B.O.2
Papin, J.A.3
-
31
-
-
67449162060
-
Genome-scale modeling of Synechocystis sp. PCC 6803 and prediction of pathway insertion
-
P. Fu Genome-scale modeling of Synechocystis sp. PCC 6803 and prediction of pathway insertion J. Chem. Technol. Biotechnol. 2009 84 473 483 10.1002/jctb.2065
-
(2009)
J. Chem. Technol. Biotechnol.
, vol.84
, pp. 473-483
-
-
Fu, P.1
-
34
-
-
79952126110
-
Flux coupling and transcriptional regulation within the metabolic network of the photosynthetic bacterium Synechocystis sp. PCC6803
-
A. Montagud A. Zelezniak E. Navarro P. F. de Cordoba J. F. Urchueguia K. R. Patil Flux coupling and transcriptional regulation within the metabolic network of the photosynthetic bacterium Synechocystis sp. PCC6803 Biotechnol. J. 2011 6 330 342 10.1002/biot.201000109
-
(2011)
Biotechnol. J.
, vol.6
, pp. 330-342
-
-
Montagud, A.1
Zelezniak, A.2
Navarro, E.3
De Cordoba, P.F.4
Urchueguia, J.F.5
Patil, K.R.6
-
35
-
-
84868275739
-
Reconstruction and comparison of the metabolic potential of cyanobacteria Cyanothece sp. ATCC 51-142 and Synechocystis sp. PCC 6803
-
R. Saha A. T. Verseput B. M. Berla T. J. Mueller H. B. Pakrasi C. D. Maranas Reconstruction and comparison of the metabolic potential of cyanobacteria Cyanothece sp. ATCC 51-142 and Synechocystis sp. PCC 6803 PLoS One 2012 7 e48285 10.1371/journal.pone.0048285
-
(2012)
PLoS One
, vol.7
, pp. e48285
-
-
Saha, R.1
Verseput, A.T.2
Berla, B.M.3
Mueller, T.J.4
Pakrasi, H.B.5
Maranas, C.D.6
-
36
-
-
84856038703
-
The SuBliMinaL Toolbox: Automating steps in the reconstruction of metabolic networks
-
N. Swainston K. Smallbone P. Mendes D. Kell N. Paton The SuBliMinaL Toolbox: automating steps in the reconstruction of metabolic networks J. Integr. Bioinf. 2011 8 186 10.2390/biecoll-jib-2011-186
-
(2011)
J. Integr. Bioinf.
, vol.8
, pp. 186
-
-
Swainston, N.1
Smallbone, K.2
Mendes, P.3
Kell, D.4
Paton, N.5
-
37
-
-
84930384104
-
Critical assessment of genome-scale metabolic networks: The need for a unified standard
-
A. Ravikrishnan K. Raman Critical assessment of genome-scale metabolic networks: the need for a unified standard Briefings Bioinf. 2015 10.1093/bib/bbv003
-
(2015)
Briefings Bioinf.
-
-
Ravikrishnan, A.1
Raman, K.2
-
38
-
-
0242487787
-
Optknock: A bilevel programming framework for identifying gene knockout strategies for microbial strain optimization
-
A. P. Burgard P. Pharkya C. D. Maranas Optknock: a bilevel programming framework for identifying gene knockout strategies for microbial strain optimization Biotechnol. Bioeng. 2003 84 647 657 10.1002/bit.10803
-
(2003)
Biotechnol. Bioeng.
, vol.84
, pp. 647-657
-
-
Burgard, A.P.1
Pharkya, P.2
Maranas, C.D.3
-
39
-
-
8744224466
-
OptStrain: A computational framework for redesign of microbial production systems
-
P. Pharkya A. P. Burgard C. D. Maranas OptStrain: a computational framework for redesign of microbial production systems Genome Res. 2004 14 2367 2376 10.1101/gr.2872004
-
(2004)
Genome Res.
, vol.14
, pp. 2367-2376
-
-
Pharkya, P.1
Burgard, A.P.2
Maranas, C.D.3
-
40
-
-
14844349363
-
MetaSHARK: Software for automated metabolic network prediction from DNA sequence and its application to the genomes of Plasmodium falciparum and Eimeria tenella
-
J. W. Pinney M. W. Shirley G. A. McConkey D. R. Westhead metaSHARK: software for automated metabolic network prediction from DNA sequence and its application to the genomes of Plasmodium falciparum and Eimeria tenella Nucleic Acids Res. 2005 33 1399 1409 10.1093/nar/gki285
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. 1399-1409
-
-
Pinney, J.W.1
Shirley, M.W.2
McConkey, G.A.3
Westhead, D.R.4
-
41
-
-
84856314687
-
MetaMerge: Scaling up genome-scale metabolic reconstructions with application to Mycobacterium tuberculosis
-
L. Chindelevitch S. Stanley D. Hung A. Regev B. Berger MetaMerge: scaling up genome-scale metabolic reconstructions with application to Mycobacterium tuberculosis Genome Biol. 2012 13 r6 10.1186/gb-2012-13-1-r6
-
(2012)
Genome Biol.
, vol.13
, pp. r6
-
-
Chindelevitch, L.1
Stanley, S.2
Hung, D.3
Regev, A.4
Berger, B.5
-
42
-
-
84870053320
-
MIRAGE: A functional genomics-based approach for metabolic network model reconstruction and its application to cyanobacteria networks
-
E. Vitkin T. Shlomi MIRAGE: a functional genomics-based approach for metabolic network model reconstruction and its application to cyanobacteria networks Genome Biol. 2012 13 R111 10.1186/gb-2012-13-11-r111
-
(2012)
Genome Biol.
, vol.13
, pp. R111
-
-
Vitkin, E.1
Shlomi, T.2
-
43
-
-
77952585143
-
CASOP: A computational approach for strain optimization aiming at high productivity
-
O. Hadicke S. Klamt CASOP: a computational approach for strain optimization aiming at high productivity J. Biotechnol. 2010 147 88 101 10.1016/j.jbiotec.2010.03.006
-
(2010)
J. Biotechnol.
, vol.147
, pp. 88-101
-
-
Hadicke, O.1
Klamt, S.2
-
44
-
-
79955145774
-
EMILiO: A fast algorithm for genome-scale strain design
-
L. Yang W. R. Cluett R. Mahadevan EMILiO: a fast algorithm for genome-scale strain design Metab. Eng. 2011 13 272 281 10.1016/j.ymben.2011.03.002
-
(2011)
Metab. Eng.
, vol.13
, pp. 272-281
-
-
Yang, L.1
Cluett, W.R.2
Mahadevan, R.3
-
45
-
-
77951552860
-
OptORF: Optimal metabolic and regulatory perturbations for metabolic engineering of microbial strains
-
J. Kim J. L. Reed OptORF: Optimal metabolic and regulatory perturbations for metabolic engineering of microbial strains BMC Syst. Biol. 2010 4 53 10.1186/1752-0509-4-53
-
(2010)
BMC Syst. Biol.
, vol.4
, pp. 53
-
-
Kim, J.1
Reed, J.L.2
-
46
-
-
0037342537
-
Et al., the systems biology markup language (SBML): A medium for representation and exchange of biochemical network models
-
M. Hucka A. Finney H. M. Sauro H. Bolouri J. C. Doyle H. Kitano et al., The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models Bioinformatics 2003 19 524 531
-
(2003)
Bioinformatics
, vol.19
, pp. 524-531
-
-
Hucka, M.1
Finney, A.2
Sauro, H.M.3
Bolouri, H.4
Doyle, J.C.5
Kitano, H.6
-
47
-
-
84979241498
-
-
The Systems Biology Markup Language 2015
-
The Systems Biology Markup Language 2015. http://sbml.org/Main-Page
-
-
-
-
49
-
-
84946047645
-
Et al., Gene: A gene-centered information resource at NCBI
-
G. R. Brown V. Hem K. S. Katz M. Ovetsky C. Wallin O. Ermolaeva et al., Gene: a gene-centered information resource at NCBI Nucleic Acids Res. 2015 43 D36 D42 10.1093/nar/gku1055
-
(2015)
Nucleic Acids Res.
, vol.43
, pp. D36-D42
-
-
Brown, G.R.1
Hem, V.2
Katz, K.S.3
Ovetsky, M.4
Wallin, C.5
Ermolaeva, O.6
-
50
-
-
0033963089
-
The ENZYME database in 2000
-
A. Bairoch The ENZYME database in 2000 Nucleic Acids Res. 2000 28 304 305 10.1093/nar/28.1.304
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 304-305
-
-
Bairoch, A.1
-
51
-
-
0033982936
-
KEGG: Kyoto encyclopedia of genes and genomes
-
M. Kanehisa S. Goto KEGG: kyoto encyclopedia of genes and genomes Nucleic Acids Res. 2000 28 27 30
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 27-30
-
-
Kanehisa, M.1
Goto, S.2
-
52
-
-
78651319979
-
-
The UniProt Consortium, Ongoing and future developments at the Universal Protein Resource Nucleic Acids Res. 2011 39 D214 D219 10.1093/nar/gkq1020
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. D214-D219
-
-
-
53
-
-
84979300360
-
-
CAS, Chemical Abstracts Service Home n.d. (accessed December 9, 2015)
-
CAS, Chemical Abstracts Service Home Page n.d. https://www.cas.org/ (accessed December 9, 2015)
-
-
-
-
54
-
-
38549127678
-
Et al., ChEBI: A database and ontology for chemical entities of biological interest
-
K. Degtyarenko P. de Matos M. Ennis J. Hastings M. Zbinden A. McNaught et al., ChEBI: a database and ontology for chemical entities of biological interest Nucleic Acids Res. 2008 36 D344 D350 10.1093/nar/gkm791
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. D344-D350
-
-
Degtyarenko, K.1
De Matos, P.2
Ennis, M.3
Hastings, J.4
Zbinden, M.5
McNaught, A.6
-
55
-
-
84950419860
-
Advances in Record-Linkage Methodology as Applied to Matching the 1985 Census of Tampa, Florida
-
M. A. Jaro Advances in Record-Linkage Methodology as Applied to Matching the 1985 Census of Tampa, Florida J. Am. Stat. Assoc. 2012 414 420 10.1080/01621459.1989.10478785
-
(2012)
J. Am. Stat. Assoc.
, pp. 414-420
-
-
Jaro, M.A.1
-
56
-
-
84979241505
-
-
Division UCB-SR. ABSTRACT: The State of Record Linkage and Current Research Problems n.d
-
Division UCB-SR. ABSTRACT: The State of Record Linkage and Current Research Problems n.d
-
-
-
-
58
-
-
84858439602
-
Constraining the metabolic genotype-phenotype relationship using a phylogeny of in silico methods
-
N. E. Lewis H. Nagarajan B. O. Palsson Constraining the metabolic genotype-phenotype relationship using a phylogeny of in silico methods Nat. Rev. Microbiol. 2012 10 291 305 10.1038/nrmicro2737
-
(2012)
Nat. Rev. Microbiol.
, vol.10
, pp. 291-305
-
-
Lewis, N.E.1
Nagarajan, H.2
Palsson, B.O.3
-
59
-
-
79551662521
-
Et al., Quantitative prediction of cellular metabolism with constraint-based models: The COBRA Toolbox v2.0
-
J. Schellenberger R. Que R. M. Fleming I. Thiele J. D. Orth A. M. Feist et al., Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2.0 Nat. Protoc. 2011 6 1290 1307 10.1038/nprot.2011.308
-
(2011)
Nat. Protoc.
, vol.6
, pp. 1290-1307
-
-
Schellenberger, J.1
Que, R.2
Fleming, R.M.3
Thiele, I.4
Orth, J.D.5
Feist, A.M.6
-
60
-
-
39449095000
-
Stoichiometric modelling of cell metabolism
-
F. Llaneras J. Pico Stoichiometric modelling of cell metabolism J. Biosci. Bioeng. 2008 105 1 11 10.1263/jbb.105.1
-
(2008)
J. Biosci. Bioeng.
, vol.105
, pp. 1-11
-
-
Llaneras, F.1
Pico, J.2
-
61
-
-
0035125986
-
In silico predictions of Escherichia coli metabolic capabilities are consistent with experimental data
-
J. S. Edwards R. U. Ibarra B. O. Palsson In silico predictions of Escherichia coli metabolic capabilities are consistent with experimental data Nat. Biotechnol. 2001 19 125 130 10.1038/84379
-
(2001)
Nat. Biotechnol.
, vol.19
, pp. 125-130
-
-
Edwards, J.S.1
Ibarra, R.U.2
Palsson, B.O.3
-
62
-
-
0037079023
-
Escherichia coli K-12 undergoes adaptive evolution to achieve in silico predicted optimal growth
-
R. U. Ibarra J. S. Edwards B. O. Palsson Escherichia coli K-12 undergoes adaptive evolution to achieve in silico predicted optimal growth Nature 2002 420 186 189 10.1038/nature01149
-
(2002)
Nature
, vol.420
, pp. 186-189
-
-
Ibarra, R.U.1
Edwards, J.S.2
Palsson, B.O.3
-
63
-
-
0037021804
-
Characterizing the metabolic phenotype: A phenotype phase plane analysis
-
J. S. Edwards R. Ramakrishna B. O. Palsson Characterizing the metabolic phenotype: a phenotype phase plane analysis Biotechnol. Bioeng. 2002 77 27 36
-
(2002)
Biotechnol. Bioeng.
, vol.77
, pp. 27-36
-
-
Edwards, J.S.1
Ramakrishna, R.2
Palsson, B.O.3
-
64
-
-
0033978251
-
Succinate:quinol oxidoreductases in the cyanobacterium Synechocystis sp. Strain PCC 6803: Presence and function in metabolism and electron transport
-
J. W. Cooley C. A. Howitt W. F. Vermaas Succinate:quinol oxidoreductases in the cyanobacterium Synechocystis sp. strain PCC 6803: presence and function in metabolism and electron transport J. Bacteriol. 2000 182 714 722
-
(2000)
J. Bacteriol.
, vol.182
, pp. 714-722
-
-
Cooley, J.W.1
Howitt, C.A.2
Vermaas, W.F.3
-
65
-
-
77956584262
-
A novel efficient dynamic programming algorithm for haplotype block partitioning
-
J. Zahiri G. Mahdevar A. Nowzari-Dalini H. Ahrabian M. Sadeghi A novel efficient dynamic programming algorithm for haplotype block partitioning J. Theor. Biol. 2010 267 164 170 10.1016/j.jtbi.2010.08.019
-
(2010)
J. Theor. Biol.
, vol.267
, pp. 164-170
-
-
Zahiri, J.1
Mahdevar, G.2
Nowzari-Dalini, A.3
Ahrabian, H.4
Sadeghi, M.5
-
66
-
-
78650509490
-
Novel genes exhibit distinct patterns of function acquisition and network integration
-
J. A. Capra K. S. Pollard M. Singh Novel genes exhibit distinct patterns of function acquisition and network integration Genome Biol. 2010 11 R127 10.1186/gb-2010-11-12-r127
-
(2010)
Genome Biol.
, vol.11
, pp. R127
-
-
Capra, J.A.1
Pollard, K.S.2
Singh, M.3
-
67
-
-
0036578795
-
Network motifs in the transcriptional regulation network of Escherichia coli
-
S. S. Shen-Orr R. Milo S. Mangan U. Alon Network motifs in the transcriptional regulation network of Escherichia coli Nat. Genet. 2002 31 64 68 10.1038/ng881
-
(2002)
Nat. Genet.
, vol.31
, pp. 64-68
-
-
Shen-Orr, S.S.1
Milo, R.2
Mangan, S.3
Alon, U.4
-
68
-
-
11244306358
-
Discovering statistically significant biclusters in gene expression data
-
A. Tanay R. Sharan R. Shamir Discovering statistically significant biclusters in gene expression data Bioinformatics 2002 18 S136 S144 10.1093/bioinformatics/18.suppl-1.S136
-
(2002)
Bioinformatics
, vol.18
, pp. S136-S144
-
-
Tanay, A.1
Sharan, R.2
Shamir, R.3
-
70
-
-
84979212699
-
-
Wilcoxon Signed-Rank Test-R Tutorial n.d. (accessed February 9, 2016)
-
Wilcoxon Signed-Rank Test-R Tutorial n.d. http://www.r-tutor.com/elementary-statistics/non-parametric-methods/wilcoxon-signed-rank-test (accessed February 9, 2016)
-
-
-
-
71
-
-
75149129569
-
A protocol for generating a high-quality genome-scale metabolic reconstruction
-
I. Thiele B. O. Palsson A protocol for generating a high-quality genome-scale metabolic reconstruction Nat. Protoc. 2010 5 93 121 10.1038/nprot.2009.203
-
(2010)
Nat. Protoc.
, vol.5
, pp. 93-121
-
-
Thiele, I.1
Palsson, B.O.2
|