-
1
-
-
84930041923
-
A giant molecular proton pump: structure and mechanism of respiratory complex I
-
COI: 1:CAS:528:DC%2BC2MXhtFWqtbfF, PID: 25991374
-
Sazanov, L. A. (2015) A giant molecular proton pump: structure and mechanism of respiratory complex I, Nat. Rev. Mol. Cell Biol., 16, 375–388.
-
(2015)
Nat. Rev. Mol. Cell Biol.
, vol.16
, pp. 375-388
-
-
Sazanov, L.A.1
-
2
-
-
33746329868
-
Energy converting NADH:quinone oxidoreductase (complex I)
-
COI: 1:CAS:528:DC%2BD28XosVKhsr0%3D, PID: 16756485
-
Brandt, U. (2006) Energy converting NADH:quinone oxidoreductase (complex I), Annu. Rev. Biochem., 75, 69–92.
-
(2006)
Annu. Rev. Biochem.
, vol.75
, pp. 69-92
-
-
Brandt, U.1
-
3
-
-
33751574953
-
Bovine complex I is a complex of 45 different subunits
-
COI: 1:CAS:528:DC%2BD28XhtFSrtr3O, PID: 16950771
-
Carroll, J., Fearnley, I. M., Skehel, J. M., Shannon, R. J., Hirst, J., and Walker, J. E. (2006) Bovine complex I is a complex of 45 different subunits, J. Biol. Chem., 281, 32724–32727.
-
(2006)
J. Biol. Chem.
, vol.281
, pp. 32724-32727
-
-
Carroll, J.1
Fearnley, I.M.2
Skehel, J.M.3
Shannon, R.J.4
Hirst, J.5
Walker, J.E.6
-
4
-
-
84915761829
-
Architecture of mammalian respiratory complex I
-
COI: 1:CAS:528:DC%2BC2cXhvVemtrvN, PID: 25209663
-
Vinothkumar, K. R., Zhu, J., and Hirst, J. (2014) Architecture of mammalian respiratory complex I, Nature, 515, 80–84.
-
(2014)
Nature
, vol.515
, pp. 80-84
-
-
Vinothkumar, K.R.1
Zhu, J.2
Hirst, J.3
-
5
-
-
33644872938
-
Structure of the hydrophilic domain of respiratory complex I from Thermus thermophilus
-
COI: 1:CAS:528:DC%2BD28XitVyjsbg%3D, PID: 16469879
-
Sazanov, L. A., and Hinchliffe, P. (2006) Structure of the hydrophilic domain of respiratory complex I from Thermus thermophilus, Science, 311, 1430–1436.
-
(2006)
Science
, vol.311
, pp. 1430-1436
-
-
Sazanov, L.A.1
Hinchliffe, P.2
-
6
-
-
84906343049
-
The mechanism of coupling between electron transfer and proton translocation in respiratory complex I
-
COI: 1:CAS:528:DC%2BC2cXhtVSgs7vK, PID: 24943718
-
Sazanov, L. A. (2014) The mechanism of coupling between electron transfer and proton translocation in respiratory complex I, J. Bioenerg. Biomembr., 46, 247–253.
-
(2014)
J. Bioenerg. Biomembr.
, vol.46
, pp. 247-253
-
-
Sazanov, L.A.1
-
7
-
-
79961032041
-
The evolution of respiratory chain complex I from a smaller last common ancestor consisting of 11 protein subunits
-
COI: 1:CAS:528:DC%2BC3MXptlyqt7c%3D, PID: 21597881
-
Moparthi, V. K., and Hägerhäll, C. (2011) The evolution of respiratory chain complex I from a smaller last common ancestor consisting of 11 protein subunits, J. Mol. Evol., 72, 484–497.
-
(2011)
J. Mol. Evol.
, vol.72
, pp. 484-497
-
-
Moparthi, V.K.1
Hägerhäll, C.2
-
8
-
-
0034674063
-
The F420H2 dehydrogenase from Methanosarcina mazei is a redox-driven proton pump closely related to NADH dehydrogenases
-
COI: 1:CAS:528:DC%2BD3cXktlymsbc%3D, PID: 10751389
-
Baumer, S., Ide, T., Jacobi, C., Johann, A., Gottschalk, G., and Deppenmeier, U. (2000) The F420H2 dehydrogenase from Methanosarcina mazei is a redox-driven proton pump closely related to NADH dehydrogenases, J. Biol. Chem., 275, 17968–17973.
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 17968-17973
-
-
Baumer, S.1
Ide, T.2
Jacobi, C.3
Johann, A.4
Gottschalk, G.5
Deppenmeier, U.6
-
9
-
-
0031771082
-
Does NADH play a central role in energy metabolism in Helicobacter pylori?
-
COI: 1:CAS:528:DyaK1cXotVWks7Y%3D, PID: 9852756
-
Finel, M. (1998) Does NADH play a central role in energy metabolism in Helicobacter pylori? Trends Biochem. Sci., 23, 412–413.
-
(1998)
Trends Biochem. Sci.
, vol.23
, pp. 412-413
-
-
Finel, M.1
-
10
-
-
38649086396
-
The Campylobacter jejuni NADH:ubiquinone oxidoreductase (complex I) utilizes flavodoxin rather than NADH
-
PID: 18065531
-
Weerakoon, D. R., and Olson, J. W. (2007) The Campylobacter jejuni NADH:ubiquinone oxidoreductase (complex I) utilizes flavodoxin rather than NADH, J. Bacteriol., 190, 915–925.
-
(2007)
J. Bacteriol.
, vol.190
, pp. 915-925
-
-
Weerakoon, D.R.1
Olson, J.W.2
-
11
-
-
0025157053
-
Nucleotide sequence and expression of an operon in Escherichia coli coding for formate hydrogenlyase components
-
COI: 1:STN:280:DyaK3c3ltFWlsQ%3D%3D, PID: 2187144
-
Bohm, R., Sauter, M., and Bock, A. (1990) Nucleotide sequence and expression of an operon in Escherichia coli coding for formate hydrogenlyase components, Mol. Microbiol., 4, 231–243.
-
(1990)
Mol. Microbiol.
, vol.4
, pp. 231-243
-
-
Bohm, R.1
Sauter, M.2
Bock, A.3
-
12
-
-
77952979824
-
The architecture of respiratory complex I
-
COI: 1:CAS:528:DC%2BC3cXmsF2itbc%3D, PID: 20505720
-
Efremov, R. G., Baradaran, R., and Sazanov, L. A. (2010) The architecture of respiratory complex I, Nature, 465, 441–445.
-
(2010)
Nature
, vol.465
, pp. 441-445
-
-
Efremov, R.G.1
Baradaran, R.2
Sazanov, L.A.3
-
13
-
-
84884606091
-
A long road towards the structure of respiratory complex I, a giant molecular proton pump
-
COI: 1:CAS:528:DC%2BC3sXhsV2gtbzF, PID: 24059518
-
Sazanov, L. A., Baradaran, R., Efremov, R. G., Berrisford, J. M., and Minhas, G. (2013) A long road towards the structure of respiratory complex I, a giant molecular proton pump, Biochem. Soc. Trans., 41, 1265–1271.
-
(2013)
Biochem. Soc. Trans.
, vol.41
, pp. 1265-1271
-
-
Sazanov, L.A.1
Baradaran, R.2
Efremov, R.G.3
Berrisford, J.M.4
Minhas, G.5
-
14
-
-
84871718657
-
A missing link between complex I and group 4 membrane-bound [NiFe] hydrogenases
-
COI: 1:CAS:528:DC%2BC38XhsVCnsLbP, PID: 23000657
-
Marreiros, B. C., Batista, A. P., Duarte, A. M., and Pereira, M. M. (2013) A missing link between complex I and group 4 membrane-bound [NiFe] hydrogenases, Biochim. Biophys. Acta, 1827, 198–209.
-
(2013)
Biochim. Biophys. Acta
, vol.1827
, pp. 198-209
-
-
Marreiros, B.C.1
Batista, A.P.2
Duarte, A.M.3
Pereira, M.M.4
-
15
-
-
26444578862
-
The Mrp system: a giant among monovalent cation/proton antiporters?
-
COI: 1:CAS:528:DC%2BD2MXhtVylt7vK, PID: 15980940
-
Swartz, T. H., Ikewada, S., Ishikawa, O., Ito, M., and Krulwich, T. A. (2005) The Mrp system: a giant among monovalent cation/proton antiporters? Extremophiles, 9, 345–354.
-
(2005)
Extremophiles
, vol.9
, pp. 345-354
-
-
Swartz, T.H.1
Ikewada, S.2
Ishikawa, O.3
Ito, M.4
Krulwich, T.A.5
-
16
-
-
0031744926
-
The pha gene cluster of Rhizobium meliloti involved in pH adaptation and symbiosis encodes a novel type of K+ efflux system
-
COI: 1:CAS:528:DyaK1cXktl2jsL8%3D, PID: 9680201
-
Putnoky, P., Kereszt, A., Nakamura, T., Endre, G., Grosskopf, E., Kiss, P., and Kondorosi, A. (1998) The pha gene cluster of Rhizobium meliloti involved in pH adaptation and symbiosis encodes a novel type of K+ efflux system, Mol. Microbiol., 28, 1091–1101.
-
(1998)
Mol. Microbiol.
, vol.28
, pp. 1091-1101
-
-
Putnoky, P.1
Kereszt, A.2
Nakamura, T.3
Endre, G.4
Grosskopf, E.5
Kiss, P.6
Kondorosi, A.7
-
17
-
-
84874352529
-
Crystal structure of the entire respiratory complex I
-
COI: 1:CAS:528:DC%2BC3sXjtFWiu70%3D, PID: 23417064
-
Baradaran, R., Berrisford, J. M., Minhas, G. S., and Sazanov, L. A. (2013) Crystal structure of the entire respiratory complex I, Nature, 494, 443–448.
-
(2013)
Nature
, vol.494
, pp. 443-448
-
-
Baradaran, R.1
Berrisford, J.M.2
Minhas, G.S.3
Sazanov, L.A.4
-
18
-
-
0041563699
-
The “antiporter module” of respiratory chain complex I includes the MrpC/NuoK subunit–a revision of the modular evolution scheme
-
COI: 1:CAS:528:DC%2BD3sXmt1Gqsr8%3D, PID: 12914915
-
Mathiesen, C., and Hägerhäll, C. (2003) The “antiporter module” of respiratory chain complex I includes the MrpC/NuoK subunit–a revision of the modular evolution scheme, FEBS Lett., 549, 7–13.
-
(2003)
FEBS Lett.
, vol.549
, pp. 7-13
-
-
Mathiesen, C.1
Hägerhäll, C.2
-
19
-
-
0034637432
-
The respiratory complex I of bacteria, archaea and eukarya and its module common with membrane-bound multisubunit hydrogenases
-
COI: 1:CAS:528:DC%2BD3cXlsFCit7w%3D, PID: 10940377
-
Friedrich, T., and Scheide, D. (2000) The respiratory complex I of bacteria, archaea and eukarya and its module common with membrane-bound multisubunit hydrogenases, FEBS Lett., 479, 1–5.
-
(2000)
FEBS Lett.
, vol.479
, pp. 1-5
-
-
Friedrich, T.1
Scheide, D.2
-
20
-
-
0031027369
-
Bovine-heart NADH:ubiquinone oxidoreductase is a monomer with 8 Fe-S clusters and 2 FMN groups
-
COI: 1:CAS:528:DyaK28XntlKkurY%3D, PID: 9030258
-
Albracht, S. P., Mariette, A., and De Jong, P. (1997) Bovine-heart NADH:ubiquinone oxidoreductase is a monomer with 8 Fe-S clusters and 2 FMN groups, Biochim. Biophys. Acta, 1318, 92–106.
-
(1997)
Biochim. Biophys. Acta
, vol.1318
, pp. 92-106
-
-
Albracht, S.P.1
Mariette, A.2
De, J.P.3
-
21
-
-
0033568398
-
Methanobacterium thermoautotrophicum encodes two multisubunit membranebound [NiFe] hydrogenases. Transcription of the operons and sequence analysis of the deduced proteins
-
COI: 1:CAS:528:DyaK1MXmt1Grur4%3D, PID: 10491142
-
Tersteegen, A., and Hedderich, R. (1999) Methanobacterium thermoautotrophicum encodes two multisubunit membranebound [NiFe] hydrogenases. Transcription of the operons and sequence analysis of the deduced proteins, Eur. J. Biochem., 264, 930–943.
-
(1999)
Eur. J. Biochem.
, vol.264
, pp. 930-943
-
-
Tersteegen, A.1
Hedderich, R.2
-
22
-
-
2142697116
-
Energy-converting [NiFe] hydrogenases from archaea and extremophiles: ancestors of complex I
-
COI: 1:CAS:528:DC%2BD2cXitVOit7Y%3D, PID: 15168611
-
Hedderich, R. (2004) Energy-converting [NiFe] hydrogenases from archaea and extremophiles: ancestors of complex I, J. Bioenerg. Biomembr., 36, 65–75.
-
(2004)
J. Bioenerg. Biomembr.
, vol.36
, pp. 65-75
-
-
Hedderich, R.1
-
23
-
-
84873290195
-
The modular respiratory complexes involved in hydrogen and sulfur metabolism by heterotrophic hyperthermophilic archaea and their evolutionary implications
-
COI: 1:CAS:528:DC%2BC3sXktF2lu70%3D, PID: 22713092
-
Schut, G. J., Boyd, E. S., Peters, J. W., and Adams, M. W. (2013) The modular respiratory complexes involved in hydrogen and sulfur metabolism by heterotrophic hyperthermophilic archaea and their evolutionary implications, FEMS Microbiol. Rev., 37, 182–203.
-
(2013)
FEMS Microbiol. Rev.
, vol.37
, pp. 182-203
-
-
Schut, G.J.1
Boyd, E.S.2
Peters, J.W.3
Adams, M.W.4
-
24
-
-
84956665737
-
The role of geochemistry and energetics in the evolution of modern respiratory complexes from a proton-reducing ancestor
-
Schut, G. J., Zadvornyy, O., Wu, C. H., Peters, J. W., Boyd, E. S., and Adams, M. W. (2016) The role of geochemistry and energetics in the evolution of modern respiratory complexes from a proton-reducing ancestor, Biochim. Biophys. Acta, pii: S0005-2728.
-
(2016)
Biochim. Biophys. Acta
-
-
Schut, G.J.1
Zadvornyy, O.2
Wu, C.H.3
Peters, J.W.4
Boyd, E.S.5
Adams, M.W.6
-
25
-
-
0030660581
-
A genomic perspective on protein families
-
COI: 1:CAS:528:DyaK2sXmvVOrsL0%3D, PID: 9381173
-
Tatusov, R. L., Koonin, E. V., and Lipman, D. J. (1997) A genomic perspective on protein families, Science, 278, 631–637.
-
(1997)
Science
, vol.278
, pp. 631-637
-
-
Tatusov, R.L.1
Koonin, E.V.2
Lipman, D.J.3
-
26
-
-
84941067064
-
Expanded microbial genome coverage and improved protein family annotation in the COG database
-
PID: 25428365
-
Galperin, M. Y., Makarova, K. S., Wolf, Y. I., and Koonin, E. V. (2015) Expanded microbial genome coverage and improved protein family annotation in the COG database, Nucleic Acids Res., 43 (Database issue), D261–269.
-
(2015)
Nucleic Acids Res.
, vol.43
, pp. D261-D269
-
-
Galperin, M.Y.1
Makarova, K.S.2
Wolf, Y.I.3
Koonin, E.V.4
-
27
-
-
77954198131
-
A low-polynomial algorithm for assembling clusters of orthologous groups from intergenomic symmetric best matches
-
COI: 1:CAS:528:DC%2BC3cXnsVOksrs%3D, PID: 20439257
-
Kristensen, D. M., Kannan, L., Coleman, M. K., Wolf, Y. I., Sorokin, A., Koonin, E. V., and Mushegian, A. (2010) A low-polynomial algorithm for assembling clusters of orthologous groups from intergenomic symmetric best matches, Bioinformatics, 26, 1481–1487.
-
(2010)
Bioinformatics
, vol.26
, pp. 1481-1487
-
-
Kristensen, D.M.1
Kannan, L.2
Coleman, M.K.3
Wolf, Y.I.4
Sorokin, A.5
Koonin, E.V.6
Mushegian, A.7
-
28
-
-
77954202864
-
Characterization of the N-ATPase, a distinct, laterally transferred Na+-translocating form of the bacterial F-type membrane ATPase
-
COI: 1:CAS:528:DC%2BC3cXnsVOltL4%3D, PID: 20472544
-
Dibrova, D. V., Galperin, M. Y., and Mulkidjanian, A. Y. (2010) Characterization of the N-ATPase, a distinct, laterally transferred Na+-translocating form of the bacterial F-type membrane ATPase, Bioinformatics, 26, 1473–1476.
-
(2010)
Bioinformatics
, vol.26
, pp. 1473-1476
-
-
Dibrova, D.V.1
Galperin, M.Y.2
Mulkidjanian, A.Y.3
-
29
-
-
35348829149
-
Inventing the dynamo machine: the evolution of the F-type and V-type ATPases
-
COI: 1:CAS:528:DC%2BD2sXhtFKltbzK, PID: 17938630
-
Mulkidjanian, A. Y., Makarova, K. S., Galperin, M. Y., and Koonin, E. V. (2007) Inventing the dynamo machine: the evolution of the F-type and V-type ATPases, Nat. Rev. Microbiol., 5, 892–899.
-
(2007)
Nat. Rev. Microbiol.
, vol.5
, pp. 892-899
-
-
Mulkidjanian, A.Y.1
Makarova, K.S.2
Galperin, M.Y.3
Koonin, E.V.4
-
30
-
-
43049131443
-
Evolutionary primacy of sodium bioenergetics
-
PID: 18380897
-
Mulkidjanian, A. Y., Galperin, M. Y., Makarova, K. S., Wolf, Y. I., and Koonin, E. V. (2008) Evolutionary primacy of sodium bioenergetics, Biol. Direct, 3, 13.
-
(2008)
Biol. Direct
, vol.3
, pp. 13
-
-
Mulkidjanian, A.Y.1
Galperin, M.Y.2
Makarova, K.S.3
Wolf, Y.I.4
Koonin, E.V.5
-
31
-
-
84884669648
-
Evolution of cytochrome bc complexes: from membrane-anchored dehydrogenases of ancient bacteria to triggers of apoptosis in vertebrates
-
COI: 1:CAS:528:DC%2BC3sXht12iu73J, PID: 23871937
-
Dibrova, D. V., Cherepanov, D. A., Galperin, M. Y., Skulachev, V. P., and Mulkidjanian, A. Y. (2013) Evolution of cytochrome bc complexes: from membrane-anchored dehydrogenases of ancient bacteria to triggers of apoptosis in vertebrates, Biochim. Biophys. Acta, 1827, 1407–1427.
-
(2013)
Biochim. Biophys. Acta
, vol.1827
, pp. 1407-1427
-
-
Dibrova, D.V.1
Cherepanov, D.A.2
Galperin, M.Y.3
Skulachev, V.P.4
Mulkidjanian, A.Y.5
-
32
-
-
33748360105
-
The cyanobacterial genome core and the origin of photosynthesis
-
COI: 1:CAS:528:DC%2BD28Xptlelsr8%3D, PID: 16924101
-
Mulkidjanian, A. Y., Koonin, E. V., Makarova, K. S., Mekhedov, S. L., Sorokin, A., Wolf, Y. I., Dufresne, A., Partensky, F., Burd, H., Kaznadzey, D., Haselkorn, R., and Galperin, M. Y. (2006) The cyanobacterial genome core and the origin of photosynthesis, Proc. Natl. Acad. Sci. USA, 103, 13126–13131.
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, pp. 13126-13131
-
-
Mulkidjanian, A.Y.1
Koonin, E.V.2
Makarova, K.S.3
Mekhedov, S.L.4
Sorokin, A.5
Wolf, Y.I.6
Dufresne, A.7
Partensky, F.8
Burd, H.9
Kaznadzey, D.10
Haselkorn, R.11
Galperin, M.Y.12
-
33
-
-
13244255415
-
MUSCLE: a multiple sequence alignment method with reduced time and space complexity
-
PID: 15318951
-
Edgar, R. C. (2004) MUSCLE: a multiple sequence alignment method with reduced time and space complexity, BMC Bioinformatics, 5, 113.
-
(2004)
BMC Bioinformatics
, vol.5
, pp. 113
-
-
Edgar, R.C.1
-
34
-
-
3042666256
-
MUSCLE: multiple sequence alignment with high accuracy and high throughput
-
COI: 1:CAS:528:DC%2BD2cXisF2ks7w%3D, PID: 15034147
-
Edgar, R. C. (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput, Nucleic Acids Res., 32, 1792–1797.
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 1792-1797
-
-
Edgar, R.C.1
-
35
-
-
65449188232
-
Jalview Version 2–a multiple sequence alignment editor and analysis workbench
-
COI: 1:CAS:528:DC%2BD1MXltFWis7Y%3D, PID: 19151095
-
Waterhouse, A. M., Procter, J. B., Martin, D. M., Clamp, M., and Barton, G. J. (2009) Jalview Version 2–a multiple sequence alignment editor and analysis workbench, Bioinformatics, 25, 1189–1191.
-
(2009)
Bioinformatics
, vol.25
, pp. 1189-1191
-
-
Waterhouse, A.M.1
Procter, J.B.2
Martin, D.M.3
Clamp, M.4
Barton, G.J.5
-
36
-
-
0030925920
-
Pfam: a comprehensive database of protein domain families based on seed alignments
-
COI: 1:CAS:528:DyaK2sXksVCgsLo%3D, PID: 9223186
-
Sonnhammer, E. L., Eddy, S. R., and Durbin, R. (1997) Pfam: a comprehensive database of protein domain families based on seed alignments, Proteins, 28, 405–420.
-
(1997)
Proteins
, vol.28
, pp. 405-420
-
-
Sonnhammer, E.L.1
Eddy, S.R.2
Durbin, R.3
-
37
-
-
0035910270
-
Predicting transmembrane protein topology with a Hidden Markov Model: application to complete genomes
-
COI: 1:CAS:528:DC%2BD3MXisFCguw%3D%3D, PID: 11152613
-
Krogh, A., Larsson, B., Von Heijne, G., and Sonnhammer, E. L. (2001) Predicting transmembrane protein topology with a Hidden Markov Model: application to complete genomes, J. Mol. Biol., 305, 567–580.
-
(2001)
J. Mol. Biol.
, vol.305
, pp. 567-580
-
-
Krogh, A.1
Larsson, B.2
Von Heijne, G.3
Sonnhammer, E.L.4
-
38
-
-
84890330527
-
MEGA6: Molecular Evolutionary Genetics Analysis version 6.0
-
COI: 1:CAS:528:DC%2BC3sXhvVKhurzP, PID: 24132122
-
Tamura, K., Stecher, G., Peterson, D., Filipski, A., and Kumar, S. (2013) MEGA6: Molecular Evolutionary Genetics Analysis version 6.0, Mol. Biol. Evol., 30, 2725–2729.
-
(2013)
Mol. Biol. Evol.
, vol.30
, pp. 2725-2729
-
-
Tamura, K.1
Stecher, G.2
Peterson, D.3
Filipski, A.4
Kumar, S.5
-
39
-
-
0023375195
-
The neighbor-joining method: a new method for reconstructing phylogenetic trees
-
COI: 1:STN:280:DyaL1c7ovFSjsA%3D%3D, PID: 3447015
-
Saitou, N., and Nei, M. (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees, Mol. Biol. Evol., 4, 406–425.
-
(1987)
Mol. Biol. Evol.
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
40
-
-
0026691182
-
The rapid generation of mutation data matrices from protein sequences
-
COI: 1:CAS:528:DyaK38Xlt1Okt7w%3D, PID: 1633570
-
Jones, D. T., Taylor, W. R., and Thornton, J. M. (1992) The rapid generation of mutation data matrices from protein sequences, Comput. Appl. Biosci., 8, 275–282.
-
(1992)
Comput. Appl. Biosci.
, vol.8
, pp. 275-282
-
-
Jones, D.T.1
Taylor, W.R.2
Thornton, J.M.3
-
41
-
-
0000461280
-
Confidence limits on phylogenies: an approach using the bootstrap
-
Felsenstein, J. (1985) Confidence limits on phylogenies: an approach using the bootstrap, Evolution, 39, 783–791.
-
(1985)
Evolution
, vol.39
, pp. 783-791
-
-
Felsenstein, J.1
-
42
-
-
0032874259
-
The rooting of the universal tree of life is not reliable
-
COI: 1:CAS:528:DyaK1MXmslWhtrs%3D, PID: 10486008
-
Philippe, H., and Forterre, P. (1999) The rooting of the universal tree of life is not reliable, J. Mol. Evol., 49, 509–523.
-
(1999)
J. Mol. Evol.
, vol.49
, pp. 509-523
-
-
Philippe, H.1
Forterre, P.2
-
43
-
-
84874400864
-
Acquisition of 1000 eubacterial genes physiologically transformed a methanogen at the origin of Haloarchaea
-
COI: 1:CAS:528:DC%2BC3sXnvVSrtg%3D%3D, PID: 23184964
-
Nelson-Sathi, S., Dagan, T., Landan, G., Janssen, A., Steel, M., McInerney, J. O., Deppenmeier, U., and Martin, W. F. (2012) Acquisition of 1000 eubacterial genes physiologically transformed a methanogen at the origin of Haloarchaea, Proc. Natl. Acad. Sci. USA, 109, 20537–20542.
-
(2012)
Proc. Natl. Acad. Sci. USA
, vol.109
, pp. 20537-20542
-
-
Nelson-Sathi, S.1
Dagan, T.2
Landan, G.3
Janssen, A.4
Steel, M.5
McInerney, J.O.6
Deppenmeier, U.7
Martin, W.F.8
-
44
-
-
0034571148
-
How many genes can make a cell: the minimal-gene-set concept
-
COI: 1:CAS:528:DC%2BD3cXnsVaku7s%3D
-
Koonin, E. V. (2000) How many genes can make a cell: the minimal-gene-set concept, Annu. Rev. Genom. Hum. Genet., 1, 99–116.
-
(2000)
Annu. Rev. Genom. Hum. Genet.
, vol.1
, pp. 99-116
-
-
Koonin, E.V.1
-
45
-
-
1542272747
-
Comparative genomics, minimal gene-sets and the last universal common ancestor
-
COI: 1:CAS:528:DC%2BD3sXosl2hsro%3D, PID: 15035042
-
Koonin, E. V. (2003) Comparative genomics, minimal gene-sets and the last universal common ancestor, Nat. Rev. Microbiol., 1, 127–136.
-
(2003)
Nat. Rev. Microbiol.
, vol.1
, pp. 127-136
-
-
Koonin, E.V.1
-
46
-
-
78149247216
-
Bacterial Na+-translocating ferredoxin:NAD+ oxidoreductase
-
COI: 1:CAS:528:DC%2BC3cXhtlCrs7nM, PID: 20921383
-
Biegel, E., and Muller, V. (2010) Bacterial Na+-translocating ferredoxin:NAD+ oxidoreductase, Proc. Natl. Acad. Sci. USA, 107, 18138–18142.
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 18138-18142
-
-
Biegel, E.1
Muller, V.2
-
47
-
-
79951579402
-
Biochemistry, evolution and physiological function of the Rnf complex, a novel ion-motive electron transport complex in prokaryotes
-
COI: 1:CAS:528:DC%2BC3MXhtFKrsr0%3D, PID: 21072677
-
Biegel, E., Schmidt, S., Gonzalez, J. M., and Muller, V. (2011) Biochemistry, evolution and physiological function of the Rnf complex, a novel ion-motive electron transport complex in prokaryotes, Cell. Mol. Life Sci., 68, 613–634.
-
(2011)
Cell. Mol. Life Sci.
, vol.68
, pp. 613-634
-
-
Biegel, E.1
Schmidt, S.2
Gonzalez, J.M.3
Muller, V.4
-
48
-
-
46349090280
-
The past and present of the sodium energetics: may the sodiummotive force be with you
-
COI: 1:CAS:528:DC%2BD1cXnsFCls7o%3D, PID: 18485887
-
Mulkidjanian, A. Y., Dibrov, P., and Galperin, M. Y. (2008) The past and present of the sodium energetics: may the sodiummotive force be with you, Biochim. Biophys. Acta, 1777, 985–992.
-
(2008)
Biochim. Biophys. Acta
, vol.1777
, pp. 985-992
-
-
Mulkidjanian, A.Y.1
Dibrov, P.2
Galperin, M.Y.3
-
49
-
-
84871242881
-
The role of energy in the emergence of biology from chemistry
-
COI: 1:CAS:528:DC%2BC38XhvVanu7vJ, PID: 23100130
-
Dibrova, D. V., Chudetsky, M. Y., Galperin, M. Y., Koonin, E. V., and Mulkidjanian, A. Y. (2012) The role of energy in the emergence of biology from chemistry, Orig. Life Evol. Biosph., 42, 459–468.
-
(2012)
Orig. Life Evol. Biosph.
, vol.42
, pp. 459-468
-
-
Dibrova, D.V.1
Chudetsky, M.Y.2
Galperin, M.Y.3
Koonin, E.V.4
Mulkidjanian, A.Y.5
-
50
-
-
63549086214
-
Co-evolution of primordial membranes and membrane proteins
-
COI: 1:CAS:528:DC%2BD1MXksVSktL4%3D, PID: 19303305
-
Mulkidjanian, A. Y., Galperin, M. Y., and Koonin, E. V. (2009) Co-evolution of primordial membranes and membrane proteins, Trends Biochem. Sci., 34, 206–215.
-
(2009)
Trends Biochem. Sci.
, vol.34
, pp. 206-215
-
-
Mulkidjanian, A.Y.1
Galperin, M.Y.2
Koonin, E.V.3
-
51
-
-
84928992317
-
Ancient systems of sodium/ potassium homeostasis as predecessors of membrane bioenergetics
-
COI: 1:CAS:528:DC%2BC2MXosFKjurc%3D
-
Dibrova, D. V., Galperin, M. Y., Koonin, E. V., and Mulkidjanian, A. Y. (2015) Ancient systems of sodium/ potassium homeostasis as predecessors of membrane bioenergetics, Biochemistry (Moscow), 80, 495–516.
-
(2015)
Biochemistry (Moscow)
, vol.80
, pp. 495-516
-
-
Dibrova, D.V.1
Galperin, M.Y.2
Koonin, E.V.3
Mulkidjanian, A.Y.4
-
52
-
-
84969754456
-
Phylogenomic analysis identifies a sodium-translocating decarboxylating oxidoreductase in Thermotogae
-
COI: 1:CAS:528:DC%2BC28XotFaksL8%3D
-
Klimchuk, O. I., Dibrova, D. V., and Mulkidjanian, A. Y. (2016) Phylogenomic analysis identifies a sodium-translocating decarboxylating oxidoreductase in Thermotogae, Biochemistry (Moscow), 81, 481–490.
-
(2016)
Biochemistry (Moscow)
, vol.81
, pp. 481-490
-
-
Klimchuk, O.I.1
Dibrova, D.V.2
Mulkidjanian, A.Y.3
-
53
-
-
0343989824
-
Sodium bioenergetics
-
COI: 1:CAS:528:DyaL2MXlvV2isQ%3D%3D
-
Skulachev, V. P. (1984) Sodium bioenergetics, Trends Biochem. Sci., 9, 483–485.
-
(1984)
Trends Biochem. Sci.
, vol.9
, pp. 483-485
-
-
Skulachev, V.P.1
-
54
-
-
0023429474
-
Proton permeation of lipid bilayers
-
COI: 1:CAS:528:DyaL1cXntVOhtw%3D%3D, PID: 2447068
-
Deamer, D. W. (1987) Proton permeation of lipid bilayers, J. Bioenerg. Biomembr., 19, 457–479.
-
(1987)
J. Bioenerg. Biomembr.
, vol.19
, pp. 457-479
-
-
Deamer, D.W.1
-
55
-
-
84859473297
-
Origin of first cells at terrestrial, anoxic geothermal fields
-
COI: 1:CAS:528:DC%2BC38XlslCksrw%3D, PID: 22331915
-
Mulkidjanian, A. Y., Bychkov, A. Y., Dibrova, D. V., Galperin, M. Y., and Koonin, E. V. (2012) Origin of first cells at terrestrial, anoxic geothermal fields, Proc. Natl. Acad. Sci. USA, 109, E821–830.
-
(2012)
Proc. Natl. Acad. Sci. USA
, vol.109
, pp. E821-E830
-
-
Mulkidjanian, A.Y.1
Bychkov, A.Y.2
Dibrova, D.V.3
Galperin, M.Y.4
Koonin, E.V.5
-
56
-
-
0011122028
-
The paleochemistry of the body fluids and tissues
-
Macallum, A. B. (1926) The paleochemistry of the body fluids and tissues, Physiol. Rev., 6, 316–357.
-
(1926)
Physiol. Rev.
, vol.6
, pp. 316-357
-
-
Macallum, A.B.1
-
57
-
-
84871244813
-
Open questions on the origin of life at anoxic geothermal fields
-
COI: 1:CAS:528:DC%2BC38XhvVanu7vK, PID: 23132762
-
Mulkidjanian, A. Y., Bychkov, A. Y., Dibrova, D. V., Galperin, M. Y., and Koonin, E. V. (2012) Open questions on the origin of life at anoxic geothermal fields, Orig. Life Evol. Biosph., 42, 507–516.
-
(2012)
Orig. Life Evol. Biosph.
, vol.42
, pp. 507-516
-
-
Mulkidjanian, A.Y.1
Bychkov, A.Y.2
Dibrova, D.V.3
Galperin, M.Y.4
Koonin, E.V.5
-
58
-
-
84870758075
-
Chemical composition of the primary aqueous phase of the Earth and origin of life
-
COI: 1:CAS:528:DC%2BC38XhslKrtLnP
-
Galimov, E. M., Natochin, Y. V., Ryzhenko, B. N., and Cherkasova, E. V. (2012) Chemical composition of the primary aqueous phase of the Earth and origin of life, Geochem. Int., 50, 1048–1068.
-
(2012)
Geochem. Int.
, vol.50
, pp. 1048-1068
-
-
Galimov, E.M.1
Natochin, Y.V.2
Ryzhenko, B.N.3
Cherkasova, E.V.4
-
59
-
-
84874108017
-
The naked planet Earth: most essential pre-requisite for the origin and evolution of life
-
COI: 1:CAS:528:DC%2BC3sXivFeksLo%3D
-
Maruyama, S., Ikoma, M., Genda, H., Hirose, K., Yokoyama, T., and Santosh, M. (2013) The naked planet Earth: most essential pre-requisite for the origin and evolution of life, Geosci. Frontiers, 4, 141–165.
-
(2013)
Geosci. Frontiers
, vol.4
, pp. 141-165
-
-
Maruyama, S.1
Ikoma, M.2
Genda, H.3
Hirose, K.4
Yokoyama, T.5
Santosh, M.6
-
60
-
-
0030741176
-
The first living systems: a bioenergetic perspective
-
COI: 1:CAS:528:DyaK2sXktFGqtb4%3D, PID: 9184012
-
Deamer, D. W. (1997) The first living systems: a bioenergetic perspective, Microbiol. Mol. Biol. Rev., 61, 239–261.
-
(1997)
Microbiol. Mol. Biol. Rev.
, vol.61
, pp. 239-261
-
-
Deamer, D.W.1
-
61
-
-
84859452614
-
-
Mulkidjanian, A. Y., and Galperin, M. Y. (2010) Evolutionary origins of membrane proteins, in Structural Bioinformatics of Membrane Proteins (Frishman, D., ed.) Springer, pp. 1–28.
-
(2010)
Evolutionary origins of membrane proteins
, pp. 1-28
-
-
Mulkidjanian, A.Y.1
Galperin, M.Y.2
-
62
-
-
2542533863
-
Membrane growth can generate a transmembrane pH gradient in fatty acid vesicles
-
COI: 1:CAS:528:DC%2BD2cXkslCisL0%3D, PID: 15148394
-
Chen, I. A., and Szostak, J. W. (2004) Membrane growth can generate a transmembrane pH gradient in fatty acid vesicles, Proc. Natl. Acad. Sci. USA, 101, 7965–7970.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 7965-7970
-
-
Chen, I.A.1
Szostak, J.W.2
-
63
-
-
0025072729
-
Slow active/inactive transition of the mitochondrial NADH-ubiquinone reductase
-
COI: 1:CAS:528:DyaK3MXhtlyls7Y%3D, PID: 2119805
-
Kotlyar, A. B., and Vinogradov, A. D. (1990) Slow active/inactive transition of the mitochondrial NADH-ubiquinone reductase, Biochim. Biophys. Acta, 1019, 151–158.
-
(1990)
Biochim. Biophys. Acta
, vol.1019
, pp. 151-158
-
-
Kotlyar, A.B.1
Vinogradov, A.D.2
-
64
-
-
84867275957
-
+ antiporter
-
COI: 1:CAS:528:DC%2BC38XhsVKlsbnK, PID: 22854968
-
+ antiporter, J. Biol. Chem., 287, 34743–34751.
-
(2012)
J. Biol. Chem.
, vol.287
, pp. 34743-34751
-
-
Roberts, P.G.1
Hirst, J.2
-
65
-
-
0021769852
-
Two protons are pumped from the mitochondrial matrix per electron transferred between NADH and ubiquinone
-
PID: 6325245
-
Wikström, M. (1984) Two protons are pumped from the mitochondrial matrix per electron transferred between NADH and ubiquinone, FEBS Lett., 169, 300–304.
-
(1984)
FEBS Lett.
, vol.169
, pp. 300-304
-
-
Wikström, M.1
-
66
-
-
33751556659
-
The proton pumping stoichiometry of purified mitochondrial complex I reconstituted into proteoliposomes
-
COI: 1:CAS:528:DC%2BD28Xht12kt77M, PID: 17094937
-
Galkin, A., Drose, S., and Brandt, U. (2006) The proton pumping stoichiometry of purified mitochondrial complex I reconstituted into proteoliposomes, Biochim. Biophys. Acta, 1757, 1575–1581.
-
(2006)
Biochim. Biophys. Acta
, vol.1757
, pp. 1575-1581
-
-
Galkin, A.1
Drose, S.2
Brandt, U.3
-
67
-
-
0032588194
-
+/2e–stoichiometry in NADH-quinone reductase reactions catalyzed by bovine heart submitochondrial particles
-
COI: 1:CAS:528:DyaK1MXjsVSjtbw%3D, PID: 10371157
-
+/2e–stoichiometry in NADH-quinone reductase reactions catalyzed by bovine heart submitochondrial particles, FEBS Lett., 451, 157–161.
-
(1999)
FEBS Lett.
, vol.451
, pp. 157-161
-
-
Galkin, A.S.1
Grivennikova, V.G.2
Vinogradov, A.D.3
-
68
-
-
0029910514
-
+/e–stoichiometry for NADH dehydrogenase I and dimethyl sulfoxide reductase in anaerobically grown Escherichia coli cells
-
COI: 1:CAS:528:DyaK28Xms1Witbc%3D, PID: 8892824
-
+/e–stoichiometry for NADH dehydrogenase I and dimethyl sulfoxide reductase in anaerobically grown Escherichia coli cells, J. Bacteriol., 178, 6233–6237.
-
(1996)
J. Bacteriol.
, vol.178
, pp. 6233-6237
-
-
Bogachev, A.V.1
Murtazina, R.A.2
Skulachev, V.P.3
-
69
-
-
84899913081
-
Adaptations of anaerobic archaea to life under extreme energy limitation
-
COI: 1:CAS:528:DC%2BC2cXnt1altLc%3D, PID: 24118021
-
Mayer, F., and Muller, V. (2014) Adaptations of anaerobic archaea to life under extreme energy limitation, FEMS Microbiol. Rev., 38, 449–472.
-
(2014)
FEMS Microbiol. Rev.
, vol.38
, pp. 449-472
-
-
Mayer, F.1
Muller, V.2
-
70
-
-
84953284616
-
+?
-
COI: 1:CAS:528:DC%2BC2MXitVyqsrvF, PID: 26711319
-
+? Biochim. Biophys. Acta, 1857, 928–937.
-
(2016)
Biochim. Biophys. Acta
, vol.1857
, pp. 928-937
-
-
Castro, P.J.1
Silva, A.F.2
Marreiros, B.C.3
Batista, A.P.4
Pereira, M.M.5
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