AP2/ERF transcription factors involved in response to tomato yellow leaf curly virus in tomato

Plant Genome

Volumn 9, Issue 2, 2016, Pages

  Huang, Ying ^a   Zhang, Bao Long ^b   Sun, Sheng ^c   Xing, Guo Ming ^c   Wang, Feng ^a   Li, Meng Yao ^a   Tian, Yong Sheng ^a   Xiong, Ai Sheng ^a  

^a NANJING AGRICULTURAL UNIVERSITY   (China)

^b INSTITUTE OF PLANT PROTECTION   (China)

^c SHANXI AGRICULTURAL UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

PLANT PROTEIN; TRANSCRIPTION FACTOR;

BEGOMOVIRUS; GENETICS; PHYSIOLOGY; PLANT DISEASE; PLANT LEAF; TOMATO; VIROLOGY;

BEGOMOVIRUS; LYCOPERSICON ESCULENTUM; PLANT DISEASES; PLANT LEAVES; PLANT PROTEINS; TRANSCRIPTION FACTORS;

EID: 84978160626     PISSN: None     EISSN: 19403372     Source Type: Journal    
DOI: 10.3835/plantgenome2015.09.0082     Document Type: Article

References (63)

1. Akad, F., A. Eybishtz, D. Edelbaum, R. Gorovits, O. Dar-Issa, N. Iraki, et al. 2007. Making a friend from a foe: Expressing a GroEL gene from the whitefly Bemisia tabaci in the phloem of tomato plants confers resistance to tomato yellow leaf curl virus. Arch. Virol. 152:1323-1339. doi:10.1007/s00705-007-0942-0
2. Allen, M.D., K. Yamasaki, M. Ohme-Takagi, M. Tateno, and M. Suzuki. 1998. A novel mode of DNA recognition by a β-sheet revealed by the solution structure of the GCC-box binding domain in complex with DNA. EMBO J. 17:5484-5496. doi:10.1093/emboj/17.18.5484
3. Anbinder, I., M. Reuveni, R. Azari, I. Paran, S. Nahon, H. Shlomo, L. Chen, M. Lapidot, and I. Levin. 2009. Molecular dissection of tomato leaf curl virus resistance in tomato line TY172 derived from Solanum peruvianum. Theor. Appl. Genet. 119:519-530. doi:10.1007/s00122-009-1060-z
4. Anderson, P.K., A.A. Cunningham, N.G. Patel, F.J. Morales, P.R. Epstein, and P. Daszak. 2004. Emerging infectious diseases of plants: Pathogen pollution, climate change and agrotechnology drivers. Trends Ecol. Evol. 19:535-544. doi:10.1016/j.tree.2004.07.021
5. Asahina, M., K. Azuma, W. Pitaksaringkarn, T. Yamazaki, N. Mitsuda, M. Ohme-Takagi, et al. 2011. Spatially selective hormonal control of RAP2.6L and ANAC071 transcription factors involved in tissue reunion in Arabidopsis. Proc. Natl. Acad. Sci. USA 108:16128-16132. doi:10.1073/pnas.1110443108
6. Bailey, T.L., M. Boden, F.A. Buske, M. Frith, C.E. Grant, L. Clementi, et al. 2009. MEME SUITE: Tools for motif discovery and searching. Nucleic Acids Res. 37:W202-W208. doi:10.1093/nar/gkp335
7. Cao, Y., S. Chen, and J. Zhang. 2008. Ethylene signaling regulates salt stress response: An overview. Plant Signal. Behav. 3:761-763. doi:10.4161/psb.3.10.5934
8. Chen, N., Q. Yang, M. Su, L. Pan, X. Chi, M. Chen, et al. 2012. Cloning of six ERF family transcription factor genes from peanut and analysis of their expression during abiotic stress. Plant Mol. Biol. Rep. 30:1415-1425. doi:10.1007/s11105-012-0456-0
9. Chen, T., Y. Lv, T. Zhao, N. Li, Y. Yang, W. Yu, et al. 2013. Comparative transcriptome profiling of a resistant vs. susceptible tomato (Solanum lycopersicum) cultivar in response to infection by tomato yellow leaf curl virus. PLoS ONE 8:e80816. doi:10.1371/journal.pone.0080816
10. Chenna, R., H. Sugawara, T. Koike, R. Lopez, T.J. Gibson, D.G. Higgins, et al. 2003. Multiple sequence alignment with the Clustal series of programs. Nucleic Acids Res. 31:3497-3500. doi:10.1093/nar/gkg500
11. Cheong, Y.H., B.C. Moon, J.K. Kim, C.Y. Kim, M.C. Kim, et al. 2003. BWMK1, a rice mitogenactivated protein kinase, locates in the nucleus and mediates pathogenesis-related gene expression by activation of a transcription factor. Plant Physiol. 132:1961-1972. doi:10.1104/pp.103.023176
12. Desikan, R., J.T. Hancock, K. Ichimura, K. Shinozaki, and S.J. Neill. 2001. Harpin induces activation of the Arabidopsis mitogen-activated protein kinases AtMPK4 and AtMPK6. Plant Physiol. 126:1579-1587. doi:10.1104/pp.126.4.1579
13. Dong, N., X. Liu, Y. Lu, L. Du, H. Xu, H. Liu, et al. 2010. Overexpression of TaPIEP1, a pathogen-induced ERF gene of wheat, confers host-enhanced resistance to fungal pathogen Bipolaris sorokiniana. Funct. Integr. Genomics 10:215-226. doi:10.1007/s10142-009-0157-4
14. Fernandez-Pozo, N., M. Naama, J.D. Edwards, S. Surya, I.Y. Tecle, S.R. Strickler, et al. 2015. The Sol Genomics Network (SGN): From genotype to phenotype to breeding. Nucleic Acids Res. 43:D1036-D1041. doi:10.1093/nar/gku1195
15. Gasteiger, E., A. Gattiker, C. Hoogland, I. Ivanyi, R.D. Appel, and A. Bairoch. 2003. ExPASy: The proteomics server for in-depth protein knowledge and analysis. Nucleic Acids Res. 31:3784-3788. doi:10.1093/nar/gkg563
16. Ge, L., J. Zhang, X. Zhou, and H. Li. 2007. Genetic structure and population variability of tomato yellow leaf curl China virus. J. Virol. 81:5902-5907. doi:10.1128/JVI.02431-06
17. Gorovits, R., F.H. Akad, F. Vidavsky, A. Mahadav, and H. Czosnek. 2007. Expression of stress-response proteins upon whitefly-mediated inoculation of tomato yellow leaf curl virus in susceptible and resistant tomato plants. Mol. Plant Microbe Interact. 20:1376-1383. doi:10.1094/MPMI-20-11-1376
18. Guo, Z., X. Chen, X. Wu, J. Ling, and P. Xu. 2004. Overexpression of the AP2/EREBP transcription factor OPBP1 enhances disease resistance and salt tolerance in tobacco. Plant Mol. Biol. 55:607-618. doi:10.1007/s11103-004-1521-3
19. Gutterson, N., and T.L. Reuber. 2004. Regulation of disease resistance pathways by AP2/ERF transcription factors. Curr. Opin. Plant Biol. 7:465-471. doi:10.1016/j.pbi.2004.04.007
20. Hanson, P., S.K. Green, and G. Kou. 2006. Ty-2, a gene on chromosome 11 conditioning geminivirus resistance in tomato. Tomato Genetics Coop. Rep. 56:17-18.
21. Huang, Y., M. Li, F. Wang, Z. Xu, W. Huang, G. Wang, et al. 2015. Heat shock factors in carrot: Genome-wide identification, classification, and expression profiles response to abiotic stress. Mol. Biol. Rep. 42:893-905. doi:10.1007/s11033-014-3826-x
22. Ji, Y., D. Schuster, and J. Scott. 2007. Ty-3, a begomovirus resistance locus near the Tomato yellow leaf curl virus resistance locus Ty-1 on chromosome 6 of tomato. Mol. Breed. 20:271-284. doi:10.1007/s11032-007-9089-7
23. Ji, Y., J.W. Scott, D.J. Schuster, and D.P. Maxwell. 2009. Molecular mapping of Ty-4, a new Tomato yellow leaf curl virus resistance locus on chromosome 3 of Tomato. J. Am. Soc. Hortic. Sci. 134:281-288.
24. Jin, X.F., B. Zhu, R. Peng, H. Jiang, J. Chen, J. Zhuang, et al. 2010. Optimizing the binding activity of the AP2/ERF transcription factor with the GCC box element from Brassica napus by directed evolution. BMB Rep. 43:567-572. doi:10.5483/BMBRep.2010.43.8.567
25. Jones, C.M., K. Gorman, I. Denholm, and M.S. Williamson. 2008. Highthroughput allelic discrimination of B and Q biotypes of the whitefly, Bemisia tabaci, using TaqMan allele-selective PCR. Pest Manag. Sci. 64:12-15. doi:10.1002/ps.1482
26. Jung, J., S.Y. Won, S.C. Suh, H. Kim, R. Wing, Y. Jeong, et al. 2007. The barley ERF-type transcription factor HvRAF confers enhanced pathogen resistance and salt tolerance in Arabidopsis. Planta 225:575-588. doi:10.1007/s00425-006-0373-2
27. Kimura, S., and N. Sinha. 2008. Tomato (Solanum lycopersicum): A model fruit-bearing crop. Cold Spring Harbor Protocols 2008. doi:10.1101/pdb.emo105
28. Klee, H.J., and J.J. Giovannoni. 2011. Genetics and control of tomato fruit ripening and quality attributes. Annu. Rev. Genet. 45:41-59. doi:10.1146/annurev-genet-110410-132507
29. Krzywinski, M., J. Schein, I. Birol, J. Connors, R. Gascoyne, D. Horsman, et al. 2009. Circos: An information aesthetic for comparative genomics. Genome Res. 19:1639-1645. doi:10.1101/gr.092759.109
30. Lapidot, M. 2007. Screening for TYLCV-resistance plants using whitefly-mediated inoculation. In: H. Czosnek, editor, Tomato yellow leaf curl virus disease. Springer, Netherlands. p. 329-342. doi:10.1007/978-1-4020-4769-5_19
31. Lefeuvre, P., D.P. Martin, G. Harkins, P. Lemey, A.J. Gray, S. Meredith, et al. 2010. The spread of tomato yellow leaf curl virus from the Middle East to the world. PLoS Pathog. 6:e1001164. doi:10.1371/journal.ppat.1001164
32. Li, L., Stoeckert, C.J., Jr., and D. S. Roos. 2003. OrthoMCL: Identification of ortholog groups for eukaryotic genomes. Genome Res. 13:2178-2189. doi:10.1101/gr.1224503
33. Li, N., M. Yang, T. Chen, B. Zhang, T. Zhao, T.M. Zhao, et al. 2014. Functional characterization of ClNLR gene involved in tomato defense against tomato yellow leaf curl disease. Acta Hortic. Sin. 41:889-897.
34. Licausi, F., O.T. Masaru, and P. Pierdomenico. 2013. APETALA2/Ethylene Responsive Factor (AP2/ERF) transcription factors: Mediators of stress responses and developmental programs. New Phytol. 199:639-649. doi:10.1111/nph.12291
35. Liu, D., X. Chen, J. Liu, J. Ye, and Z. Guo. 2012. The rice ERF transcription factor OsERF922 negatively regulates resistance to Magnaporthe oryzae and salt tolerance. J. Exp. Bot. 63:3899-3911. doi:10.1093/jxb/ers079
36. Liu, Y., T. Zhao, W. Liu, Y. Yan, and H. Zhou. 2006. The conserved Ala37 in the ERF/AP2 domain is essential for binding with the DRE element and the GCC box. FEBS Lett. 580:1303-1308. doi:10.1016/j.febslet.2006.01.048
37. Lu, J., H. Ju, G. Zhou, C. Zhu, M. Erb, X. Wang, P. Wang, and Y. Lou. 2011.An EAR‐motif‐containing ERF transcription factor affects herbivore‐induced signaling, defense and resistance in rice. Plant J. 68:583-596. doi:10.1111/j.1365-313X.2011.04709.x
38. Maes, T., N. Van de Steene, J. Zethof, M. Karimi, M. D’Hauw, G. Mareset, et al. 2001. Petunia Ap2-like genes and their role in flower and seed development. Plant Cell 13:229-244. doi:10.1105/tpc.13.2.229
39. Morin, S., M. Ghanim, M. Zeidan, H. Czosnek, M. Verdeek, and J.F.J.M. van den Heuvel. 1999. A GroEL homologue from endosymbiotic bacteria of the whitefly Bemisia tabaci is implicated in the circulative transmission of tomato yellow leaf curl virus. Virology 256:75-84. doi:10.1006/viro.1999.9631
40. Mueller, L.A., T.H. Solow, N. Taylor, B. Skwarecki, R. Buels, J. Binns, et al. 2005. The SOL Genomics Network: A comparative resource for Solanaceae biology and beyond. Plant Physiol. 138:1310-1317. doi:10.1104/pp.105.060707
41. Nuhse, T.S., S.C. Peck, H. Hirt, and T. Boller. 2000. Microbial elicitors induce activation and dual phosphorylation of the Arabidopsis thaliana MAPK 6. J. Biol. Chem. 275:7521-7526. doi:10.1074/jbc.275.11.7521
42. Ohme-Takagi, M., and H. Shinshi. 1995. Ethylene-inducible DNA-binding proteins that interact with an ethylene-responsive element. Plant Cell 7:173-182. doi:10.1105/tpc.7.2.173
43. Olaiya, C.O., 2011. Bioregulators favourably affect the levels of vitamins and sugars in tomato fruit tissues. Vegetable Crops Research Bulletin 75:71-79. doi:10.2478/v10032-011-0019-1
44. Ou, B., K.Q. Yin, S.N. Liu, Y. Yang, T. Gu, J.M. Wing Hui, et al. 2011. A high-throughput screening system for Arabidopsis transcription factors and its application to Med25-dependent transcriptional regulation. Mol. Plant 4:546-555. doi:10.1093/mp/ssr002
45. Pandey, S.P., and I.E. Somssich. 2009. The role of WRKY transcription factors in plant immunity. Plant Physiol. 150:1648-1655. doi:10.1104/pp.109.138990
46. Pfaffl, M. 2001. A new mathematical model for relative quantification in real-time RT-PCR. Nucleic Acids Res. 29:E45. doi:10.1093/nar/29.9.e45
47. PREMIER Biosoft. 2012. Primer Premier version 5.0 software. PREMIER Biosoft, Palo Alto, CA.
48. Sade, D., O. Shriki, A. Cuadros-Inostroza, T. Tohge, Y. Semel, Y. Havivet, et al. 2015. Comparative metabolomics and transcriptomics of plant response to Tomato yellow leaf curl virus infection in resistant and susceptible tomato cultivars. Metabolomics 11:81-97. doi:10.1007/s11306-014-0670-x
49. Schauer, N., Y. Semel, I. Balbo, M. Steinfath, D. Repsilber, J. Selbig, et al. 2008. Mode of inheritance of primary metabolic traits in tomato. Plant Cell 20:509-523. doi:10.1105/tpc.107.056523
50. Sherif, S., I. El-Sharkawy, G. Paliyath, and S. Jayasankar. 2012. Differential expression of peach ERF transcriptional activators in response to signaling molecules and inoculation with Xanthomonas campestris pv. pruni. J. Plant Physiol. 169:731-739. doi:10.1016/j.jplph.2012.02.003
51. Shi, J.X., S. Malitsky, S. De Oliveira, C. Branigan, R.B. Franke, L. Schreiber, et al. 2011. SHINE transcription factors act redundantly to pattern the archetypal surface of Arabidopsis flower organs. PLoS Genet. 7:E1001388. doi:10.1371/journal.pgen.1001388
52. Shin, R., J.M. Park, J.M. An, and K.H. Paek. 2002. Ectopic expression of Tsi1 in transgenic hot pepper plants enhances host resistance to viral, bacterial, and oomycete pathogens. Mol. Plant Microbe Interact. 15:983-989. doi:10.1094/MPMI.2002.15.10.983
53. Song, X., G. Liu, W. Duan, T. Liu, Z. Huang, J. Ren, et al. 2014. Genomewide identification, classification and expression analysis of the heat shock transcription factor family in Chinese cabbage. Mol. Genet. Genomics 289:541-551. doi:10.1007/s00438-014-0833-5
54. Tamura, K., D. Peterson, N. Peterson, G. Stecher, M. Nei, and S. Kumar. 2011. MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 28:2731-2739. doi:10.1093/molbev/msr121
55. The Tomato Genome Consortium. 2015. The tomato genome sequence provides insights into fleshy fruit evolution. Nature 485:635-641. doi:10.1038/nature11119
56. Tsaftaris, A.S., K. Pasentsis, P. Madesis, and A. Argiriou. 2012. Sequence characterization and expression analysis of three APETALA2-like genes from saffron crocus. Plant Mol. Biol. Rep. 30:443-452. doi:10.1007/s11105-011-0355-9
57. Wang, S., S. Yang, Y. Yin, J. Xi, S. Li, and D. Hao. 2009. Molecular dynamics simulations reveal the disparity in specific recognition of GCCbox by AtERFs transcription factors superfamily in Arabidopsis. J. Mol. Recognit. 22:474-479. doi:10.1002/jmr.965
58. Xiong, A., H. Jiang, J. Zhuang, R. Peng, X. Jin, B. Zhu, et al. 2013. Expression and function of a modified AP2/ERF transcription factor from Brassica napus enhances cold tolerance in transgenic Arabidopsis. Mol. Biotechnol. 53:198-206. doi:10.1007/s12033-012-9515-x
59. Yamaguchi-Shinozaki, K., and K. Shinozaki. 2006. Transcriptional regulatory networks in cellular responses and tolerance to dehydration and cold stresses. Annu. Rev. Plant Biol. 57:781-803. doi:10.1146/annurev.arplant.57.032905.105444
60. Ye, R., Q. Yao, Z.H. Xu, and H.W. Xue. 2004. Development of an efficient method for the isolation of factors involved in gene transcription during rice embryo development. Plant J. 38:348-357. doi:10.1111/j.1365-313X.2004.02037.x
61. Zamir, D., I. Ekstein-Michelson, Y. Zakay, N. Navot, M. Zeidan, M. Sarfatti, et al. 1994. Mapping and introgression of a tomato yellow leaf curl virus tolerance gene, Ty-1. Theor. Appl. Genet. 88:141-146. doi:10.1007/BF00225889
62. Zhang, J., C.D. Broeckling, E.B. Blancaflor, M.K. Sledge, L.W. Sumner, and Z. Wang. 2005. Overexpression of WXP1, a putative Medicago truncatula AP2 domain-containing transcription factor gene, increases cuticular wax accumulation and enhances drought tolerance in transgenic alfalfa (Medicago sativa). Plant J. 42:689-707. doi:10.1111/j.1365-313X.2005.02405.x
63. Zhang, Z., W. Yao, N. Dong, H. Liang, H. Liu, and R. Huang. 2007. A novel ERF transcription activator in wheat and its induction kinetics after pathogen and hormone treatments. J. Exp. Bot. 58:2993-3003. doi:10.1093/jxb/erm151