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Volumn 136, Issue 4, 2016, Pages 779-787

Epigenome-Wide Association Analysis Identified Nine Skin DNA Methylation Loci for Psoriasis

Author keywords

[No Author keywords available]

Indexed keywords

ARGONAUTE 2 PROTEIN; ARGONAUTE PROTEIN; ASPARTIC PROTEINASE; CYP2S1 PROTEIN, HUMAN; CYTOCHROME P450; EIF2C2 PROTEIN, HUMAN; ENDOTHELIN-CONVERTING ENZYME; MANNOSIDASE; MANNOSYL-OLIGOSACCHARIDE 1,2-ALPHA-MANNOSIDASE; METALLOPROTEINASE; NERVE PROTEIN; SAPAP PROTEINS;

EID: 84978151517     PISSN: 0022202X     EISSN: 15231747     Source Type: Journal    
DOI: 10.1016/j.jid.2015.12.029     Document Type: Article
Times cited : (81)

References (34)
  • 1
    • 77954054512 scopus 로고    scopus 로고
    • Regulation of cytokines by small RNAs during skin inflammation
    • Bak, R.O., Mikkelsen, J.G., Regulation of cytokines by small RNAs during skin inflammation. J Biomed Sci, 17, 2010, 53.
    • (2010) J Biomed Sci , vol.17 , pp. 53
    • Bak, R.O.1    Mikkelsen, J.G.2
  • 2
    • 33745035454 scopus 로고    scopus 로고
    • Elevated serum levels of calcium-binding S100 proteins A8 and A9 reflect disease activity and abnormal differentiation of keratinocytes in psoriasis
    • Benoit, S., Toksoy, A., Ahlmann, M., Schmidt, M., Sunderkotter, C., Foell, D., et al. Elevated serum levels of calcium-binding S100 proteins A8 and A9 reflect disease activity and abnormal differentiation of keratinocytes in psoriasis. Br J Dermatol 155 (2006), 62–66.
    • (2006) Br J Dermatol , vol.155 , pp. 62-66
    • Benoit, S.1    Toksoy, A.2    Ahlmann, M.3    Schmidt, M.4    Sunderkotter, C.5    Foell, D.6
  • 3
    • 80053304450 scopus 로고    scopus 로고
    • High density DNA methylation array with single CpG site resolution
    • Bibikova, M., Barnes, B., Tsan, C., Ho, V., Klotzle, B., Le, J.M., et al. High density DNA methylation array with single CpG site resolution. Genomics 98 (2011), 288–295.
    • (2011) Genomics , vol.98 , pp. 288-295
    • Bibikova, M.1    Barnes, B.2    Tsan, C.3    Ho, V.4    Klotzle, B.5    Le, J.M.6
  • 4
    • 84880909300 scopus 로고    scopus 로고
    • Integration of high-resolution methylome and transcriptome analyses to dissect epigenomic changes in childhood acute lymphoblastic leukemia
    • Busche, S., Ge, B., Vidal, R., Spinella, J.F., Saillour, V., Richer, C., et al. Integration of high-resolution methylome and transcriptome analyses to dissect epigenomic changes in childhood acute lymphoblastic leukemia. Cancer Res 73 (2013), 4323–4336.
    • (2013) Cancer Res , vol.73 , pp. 4323-4336
    • Busche, S.1    Ge, B.2    Vidal, R.3    Spinella, J.F.4    Saillour, V.5    Richer, C.6
  • 6
    • 84855956247 scopus 로고    scopus 로고
    • Epigenetics and the environment: emerging patterns and implications
    • Feil, R., Fraga, M.F., Epigenetics and the environment: emerging patterns and implications. Nat Rev Genet 13 (2011), 97–109.
    • (2011) Nat Rev Genet , vol.13 , pp. 97-109
    • Feil, R.1    Fraga, M.F.2
  • 7
    • 0034805325 scopus 로고    scopus 로고
    • Synaptotagmin-like protein 1-3: a novel family of C-terminal-type tandem C2 proteins
    • Fukuda, M., Mikoshiba, K., Synaptotagmin-like protein 1-3: a novel family of C-terminal-type tandem C2 proteins. Biochem Biophys Res Commun 281 (2001), 1226–1233.
    • (2001) Biochem Biophys Res Commun , vol.281 , pp. 1226-1233
    • Fukuda, M.1    Mikoshiba, K.2
  • 8
    • 11144327646 scopus 로고    scopus 로고
    • The prevalence of psoriasis in African Americans: results from a population-based study
    • Gelfand, J.M., Stern, R.S., Nijsten, T., Feldman, S.R., Thomas, J., Kist, J., et al. The prevalence of psoriasis in African Americans: results from a population-based study. J Am Acad Dermatol 52 (2005), 23–26.
    • (2005) J Am Acad Dermatol , vol.52 , pp. 23-26
    • Gelfand, J.M.1    Stern, R.S.2    Nijsten, T.3    Feldman, S.R.4    Thomas, J.5    Kist, J.6
  • 10
    • 28744458859 scopus 로고    scopus 로고
    • Bioconductor: open software development for computational biology and bioinformatics
    • Gentleman, R.C., Carey, V.J., Bates, D.M., Bolstad, B., Dettling, M., Dudoit, S., et al. Bioconductor: open software development for computational biology and bioinformatics. Genome Biol, 5, 2004, R80.
    • (2004) Genome Biol , vol.5 , pp. R80
    • Gentleman, R.C.1    Carey, V.J.2    Bates, D.M.3    Bolstad, B.4    Dettling, M.5    Dudoit, S.6
  • 11
    • 84857483409 scopus 로고    scopus 로고
    • DNA methylation and gene expression changes in monozygotic twins discordant for psoriasis: identification of epigenetically dysregulated genes
    • Gervin, K., Vigeland, M.D., Mattingsdal, M., Hammero, M., Nygard, H., Olsen, A.O., et al. DNA methylation and gene expression changes in monozygotic twins discordant for psoriasis: identification of epigenetically dysregulated genes. PLoS Genet, 8, 2012, e1002454.
    • (2012) PLoS Genet , vol.8 , pp. e1002454
    • Gervin, K.1    Vigeland, M.D.2    Mattingsdal, M.3    Hammero, M.4    Nygard, H.5    Olsen, A.O.6
  • 12
    • 77953620903 scopus 로고    scopus 로고
    • Assessment of the psoriatic transcriptome in a large sample: additional regulated genes and comparisons with in vitro models
    • Gudjonsson, J.E., Ding, J., Johnston, A., Tejasvi, T., Guzman, A.M., Nair, R.P., et al. Assessment of the psoriatic transcriptome in a large sample: additional regulated genes and comparisons with in vitro models. J Invest Dermatol 130 (2010), 1829–1840.
    • (2010) J Invest Dermatol , vol.130 , pp. 1829-1840
    • Gudjonsson, J.E.1    Ding, J.2    Johnston, A.3    Tejasvi, T.4    Guzman, A.M.5    Nair, R.P.6
  • 13
    • 59149084538 scopus 로고    scopus 로고
    • The human colon cancer methylome shows similar hypo- and hypermethylation at conserved tissue-specific CpG island shores
    • Irizarry, R.A., Ladd-Acosta, C., Wen, B., Wu, Z., Montano, C., Onyango, P., et al. The human colon cancer methylome shows similar hypo- and hypermethylation at conserved tissue-specific CpG island shores. Nat Genet 41 (2009), 178–186.
    • (2009) Nat Genet , vol.41 , pp. 178-186
    • Irizarry, R.A.1    Ladd-Acosta, C.2    Wen, B.3    Wu, Z.4    Montano, C.5    Onyango, P.6
  • 14
    • 80053159711 scopus 로고    scopus 로고
    • Deep sequencing of small RNAs from human skin reveals major alterations in the psoriasis miRNAome
    • Joyce, C.E., Zhou, X., Xia, J., Ryan, C., Thrash, B., Menter, A., et al. Deep sequencing of small RNAs from human skin reveals major alterations in the psoriasis miRNAome. Hum Mol Genet 20 (2011), 4025–4040.
    • (2011) Hum Mol Genet , vol.20 , pp. 4025-4040
    • Joyce, C.E.1    Zhou, X.2    Xia, J.3    Ryan, C.4    Thrash, B.5    Menter, A.6
  • 15
    • 0034729346 scopus 로고    scopus 로고
    • It's got you covered. NF-kappaB in the epidermis
    • Kaufman, C.K., Fuchs, E., It's got you covered. NF-kappaB in the epidermis. J Cell Biol 149 (2000), 999–1004.
    • (2000) J Cell Biol , vol.149 , pp. 999-1004
    • Kaufman, C.K.1    Fuchs, E.2
  • 17
    • 84865312977 scopus 로고    scopus 로고
    • The human epidermal differentiation complex: cornified envelope precursors, S100 proteins and the ‘fused genes’ family
    • Kypriotou, M., Huber, M., Hohl, D., The human epidermal differentiation complex: cornified envelope precursors, S100 proteins and the ‘fused genes’ family. Exp Dermatol 21 (2012), 643–649.
    • (2012) Exp Dermatol , vol.21 , pp. 643-649
    • Kypriotou, M.1    Huber, M.2    Hohl, D.3
  • 18
    • 80054994283 scopus 로고    scopus 로고
    • Identification of genetic elements that autonomously determine DNA methylation states
    • Lienert, F., Wirbelauer, C., Som, I., Dean, A., Mohn, F., Schubeler, D., Identification of genetic elements that autonomously determine DNA methylation states. Nat Genet 43 (2011), 1091–1097.
    • (2011) Nat Genet , vol.43 , pp. 1091-1097
    • Lienert, F.1    Wirbelauer, C.2    Som, I.3    Dean, A.4    Mohn, F.5    Schubeler, D.6
  • 19
    • 84923336072 scopus 로고    scopus 로고
    • Laser capture microdissection followed by next-generation sequencing identifies disease-related microRNAs in psoriatic skin that reflect systemic microRNA changes in psoriasis
    • Lovendorf, M.B., Mitsui, H., Zibert, J.R., Ropke, M.A., Hafner, M., Dyring-Andersen, B., et al. Laser capture microdissection followed by next-generation sequencing identifies disease-related microRNAs in psoriatic skin that reflect systemic microRNA changes in psoriasis. Exp Dermatol 24 (2015), 187–193.
    • (2015) Exp Dermatol , vol.24 , pp. 187-193
    • Lovendorf, M.B.1    Mitsui, H.2    Zibert, J.R.3    Ropke, M.A.4    Hafner, M.5    Dyring-Andersen, B.6
  • 21
    • 84887214395 scopus 로고    scopus 로고
    • Intragenic DNA methylation modulates alternative splicing by recruiting MeCP2 to promote exon recognition
    • Maunakea, A.K., Chepelev, I., Cui, K., Zhao, K., Intragenic DNA methylation modulates alternative splicing by recruiting MeCP2 to promote exon recognition. Cell Res 23 (2013), 1256–1269.
    • (2013) Cell Res , vol.23 , pp. 1256-1269
    • Maunakea, A.K.1    Chepelev, I.2    Cui, K.3    Zhao, K.4
  • 22
    • 34547955952 scopus 로고    scopus 로고
    • A Slicer-independent role for Argonaute 2 in hematopoiesis and the microRNA pathway
    • O'Carroll, D., Mecklenbrauker, I., Das, P.P., Santana, A., Koenig, U., Enright, A.J., et al. A Slicer-independent role for Argonaute 2 in hematopoiesis and the microRNA pathway. Genes Dev 21 (2007), 1999–2004.
    • (2007) Genes Dev , vol.21 , pp. 1999-2004
    • O'Carroll, D.1    Mecklenbrauker, I.2    Das, P.P.3    Santana, A.4    Koenig, U.5    Enright, A.J.6
  • 23
    • 34548292504 scopus 로고    scopus 로고
    • PLINK: a tool set for whole-genome association and population-based linkage analyses
    • Purcell, S., Neale, B., Todd-Brown, K., Thomas, L., Ferreira, M.A., Bender, D., et al. PLINK: a tool set for whole-genome association and population-based linkage analyses. Am J Hum Genet 81 (2007), 559–575.
    • (2007) Am J Hum Genet , vol.81 , pp. 559-575
    • Purcell, S.1    Neale, B.2    Todd-Brown, K.3    Thomas, L.4    Ferreira, M.A.5    Bender, D.6
  • 24
    • 84965039431 scopus 로고    scopus 로고
    • R: a Language and environment for statistical computing
    • R Foundation For Statistical Computing Vienna, Austria
    • R Development Core Team. R: a Language and environment for statistical computing. 2012, R Foundation For Statistical Computing, Vienna, Austria.
    • (2012)
  • 25
    • 84856866870 scopus 로고    scopus 로고
    • A subset of methylated CpG sites differentiate psoriatic from normal skin
    • Roberson, E.D., Liu, Y., Ryan, C., Joyce, C.E., Duan, S., Cao, L., et al. A subset of methylated CpG sites differentiate psoriatic from normal skin. J Invest Dermatol 132 (2012), 583–592.
    • (2012) J Invest Dermatol , vol.132 , pp. 583-592
    • Roberson, E.D.1    Liu, Y.2    Ryan, C.3    Joyce, C.E.4    Duan, S.5    Cao, L.6
  • 26
    • 0034808733 scopus 로고    scopus 로고
    • Identification and tissue distribution of the novel human cytochrome P450 2S1 (CYP2S1)
    • Rylander, T., Neve, E.P., Ingelman-Sundberg, M., Oscarson, M., Identification and tissue distribution of the novel human cytochrome P450 2S1 (CYP2S1). Biochem Biophys Res Commun 281 (2001), 529–535.
    • (2001) Biochem Biophys Res Commun , vol.281 , pp. 529-535
    • Rylander, T.1    Neve, E.P.2    Ingelman-Sundberg, M.3    Oscarson, M.4
  • 27
    • 84863550037 scopus 로고    scopus 로고
    • Genome-scale analysis of DNA methylation in lung adenocarcinoma and integration with mRNA expression
    • Selamat, S.A., Chung, B.S., Girard, L., Zhang, W., Zhang, Y., Campan, M., et al. Genome-scale analysis of DNA methylation in lung adenocarcinoma and integration with mRNA expression. Genome Res 22 (2012), 1197–1211.
    • (2012) Genome Res , vol.22 , pp. 1197-1211
    • Selamat, S.A.1    Chung, B.S.2    Girard, L.3    Zhang, W.4    Zhang, Y.5    Campan, M.6
  • 29
    • 0037454384 scopus 로고    scopus 로고
    • Cutaneous expression of cytochrome P450 CYP2S1: individuality in regulation by therapeutic agents for psoriasis and other skin diseases
    • Smith, G., Wolf, C.R., Deeni, Y.Y., Dawe, R.S., Evans, A.T., Comrie, M.M., et al. Cutaneous expression of cytochrome P450 CYP2S1: individuality in regulation by therapeutic agents for psoriasis and other skin diseases. Lancet 361 (2003), 1336–1343.
    • (2003) Lancet , vol.361 , pp. 1336-1343
    • Smith, G.1    Wolf, C.R.2    Deeni, Y.Y.3    Dawe, R.S.4    Evans, A.T.5    Comrie, M.M.6
  • 31
    • 0028967692 scopus 로고
    • Post-translational abnormality of the type II cyclic AMP-dependent protein kinase in psoriasis: modulation by retinoic acid
    • Tournier, S., Gerbaud, P., Anderson, W.B., Lohmann, S.M., Evain-Brion, D., Raynaud, F., Post-translational abnormality of the type II cyclic AMP-dependent protein kinase in psoriasis: modulation by retinoic acid. J Cell Biochem 57 (1995), 647–654.
    • (1995) J Cell Biochem , vol.57 , pp. 647-654
    • Tournier, S.1    Gerbaud, P.2    Anderson, W.B.3    Lohmann, S.M.4    Evain-Brion, D.5    Raynaud, F.6
  • 32
    • 78651353376 scopus 로고    scopus 로고
    • Expression of S100A8/A9 in HaCaT keratinocytes alters the rate of cell proliferation and differentiation
    • Voss, A., Bode, G., Sopalla, C., Benedyk, M., Varga, G., Bohm, M., et al. Expression of S100A8/A9 in HaCaT keratinocytes alters the rate of cell proliferation and differentiation. FEBS Lett 585 (2011), 440–446.
    • (2011) FEBS Lett , vol.585 , pp. 440-446
    • Voss, A.1    Bode, G.2    Sopalla, C.3    Benedyk, M.4    Varga, G.5    Bohm, M.6
  • 33
    • 84863230488 scopus 로고    scopus 로고
    • IMA: an R package for high-throughput analysis of Illumina's 450K Infinium methylation data
    • Wang, D., Yan, L., Hu, Q., Sucheston, L.E., Higgins, M.J., Ambrosone, C.B., et al. IMA: an R package for high-throughput analysis of Illumina's 450K Infinium methylation data. Bioinformatics 28 (2012), 729–730.
    • (2012) Bioinformatics , vol.28 , pp. 729-730
    • Wang, D.1    Yan, L.2    Hu, Q.3    Sucheston, L.E.4    Higgins, M.J.5    Ambrosone, C.B.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.