A new protoparvovirus in human fecal samples and cutaneous T cell lymphomas (mycosis fungoides)

Virology

Volumn 496, Issue , 2016, Pages 299-305

  Phan, Tung G ^a,b   Dreno, Brigitte ^c   da Costa, Antonio Charlys ^a,d   Li, Linlin ^a,b   Orlandi, Patricia ^e   Deng, Xutao ^a,b   Kapusinszky, Beatrix ^a,b   Siqueira, Juliana ^a,f   Knol, Anne Chantal ^c   Halary, Franck ^c,g,h   Dantal, Jacques ^c   Alexander, Kathleen A ^i,j   Pesavento, Patricia A ^k   Delwart, Eric ^a,b  

^a BLOOD SYSTEMS RESEARCH INSTITUTE   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

^c NANTES UNIVERSITY HOSPITAL   (France)

^d UNIVERSITY OF SÃO PAULO   (Brazil)

^e INSTITUTO OSWALDO CRUZ   (Brazil)

^f INSTITUTO NACIONAL DE CÂNCER   (Brazil)

^g Centre National de la Recherche Scientifique   (France)

^h UNIVERSITÉ DE NANTES   (France)

ⁱ VIRGINIA POLYTECHNIC INSTITUTE AND STATE UNIVERSITY   (United States)

^j and Land use   (Botswana)

^k UNIVERSITY OF CALIFORNIA   (United States)

more..

Author keywords

CTCL; Cutavirus; Oncolytic; Protoparvovirus

Indexed keywords

NONSTRUCTURAL PROTEIN 1; PROTEIN VP1; VIRUS DNA;

AMINO ACID SEQUENCE; ARTICLE; BOTSWANA; BRAZIL; CANCER GROWTH; CHILD; COMPARATIVE STUDY; COMPUTER MODEL; CONTROLLED STUDY; CUTAVIRUS; FECES ANALYSIS; GENETIC VARIABILITY; GENOMICS; HUMAN; IN SITU HYBRIDIZATION; METAGENOMICS; MYCOSIS FUNGOIDES; NONHUMAN; OPEN READING FRAME; PHYLOGENETIC TREE; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; PROTOPARVOVIRUS; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY; SKIN BIOPSY; TROPISM; VIRUS; VIRUS GENOME; BIOPSY; CLASSIFICATION; COMPLICATION; FECES; GENETICS; ISOLATION AND PURIFICATION; METAGENOME; PARVOVIRIDAE; PARVOVIRUS INFECTION; PATHOLOGY; PHYLOGENY; RNA SPLICING; VIROLOGY;

BIOPSY; DNA, VIRAL; FECES; HUMANS; METAGENOME; METAGENOMICS; MYCOSIS FUNGOIDES; OPEN READING FRAMES; PARVOVIRIDAE INFECTIONS; PARVOVIRUS; PHYLOGENY; RNA SPLICING;

EID: 84977546010     PISSN: 00426822     EISSN: 10960341     Source Type: Journal    
DOI: 10.1016/j.virol.2016.06.013     Document Type: Article

References (47)

1. Adamson L.A., Fowler L.J., Clare-Salzler M.J., Hobbs J.A. Parvovirus B19 infection in Hashimoto's thyroiditis, papillary thyroid carcinoma, and anaplastic thyroid carcinoma. Thyroid: Off. J. Am. Thyroid Assoc. 2011, 21:411-417.
2. Altay A., Yahiro T., Bozdayi G., Matsumoto T., Sahin F., Ozkan S., Nishizono A., Soderlund-Venermo M., Ahmed K. Bufavirus genotype 3 in Turkish children with severe diarrhoea. Clin. Microbiol. and Infect.: Off. Publ. Eur. Soc. Clin. Microbiol. Infect. Dis. 2015.
3. Berns K.I., Parrish C.R. Parvoviridae. Field's Virology 2013, 1768-1791. (Chapter 57), Lippincott Williams and Wilkins, Philadelphia, Pennsylvania. sixth edition. D.M. Knipe, P.M. Howley (Eds.).
4. Brown K.E. The expanding range of parvoviruses which infect humans. Rev. Med. Virol. 2010, 20:231-244.
5. Canuti M., Williams C.V., Gadi S.R., Jebbink M.F., Oude Munnink B.B., Jazaeri Farsani S.M., Cullen J.M., van der Hoek L. Persistent viremia by a novel parvovirus in a slow loris (Nycticebus coucang) with diffuse histiocytic sarcoma. Front. Microbiol. 2014, 1(5):655. eCollection 2014. 10.3389/fmicb.2014.00655.
6. Chieochansin T., Vutithanachot V., Theamboonlers A., Poovorawan Y. Bufavirus in fecal specimens of patients with and without diarrhea in Thailand. Arch. Virol. 2015, 160:1781-1784.
7. Cotmore S.F., Agbandje-McKenna M., Chiorini J.A., Mukha D.V., Pintel D.J., Qiu J., Soderlund-Venermo M., Tattersall P., Tijssen P., Gatherer D., Davison A.J. The family Parvoviridae. Arch. Virol. 2014, 159:1239-1247.
8. da Cruz C.B., de Souza M.C., Serra P.T., Santos I., Balieiro A., Pieri F.A., Nogueira P.A., Orlandi P.P. Virulence factors associated with pediatric shigellosis in Brazilian Amazon. Biomed. Res. Int. 2014, 2014:539697.
9. Gaertner D.J., Jacoby R.O., Johnson E.A., Paturzo F.X., Smith A.L., Brandsma J.L. Characterization of acute rat parvovirus infection by in situ hybridization. Virus Res. 1993, 28:1-18.
10. Ganesh B., Banyai K., Martella V., Jakab F., Masachessi G., Kobayashi N. Picobirnavirus infections: viral persistence and zoonotic potential. Rev. Med. Virol. 2012, 22:245-256.
11. Gorbalenya A.E., Koonin E.V., Wolf Y.I. A new superfamily of putative NTP-binding domains encoded by genomes of small DNA and RNA viruses. FEBS Lett. 1990, 262:145-148.
12. Handley S.A., Thackray L.B., Zhao G., Presti R., Miller A.D., Droit L., Abbink P., Maxfield L.F., Kambal A., Duan E., Stanley K., Kramer J., Macri S.C., Permar S.R., Schmitz J.E., Mansfield K., Brenchley J.M., Veazey R.S., Stappenbeck T.S., Wang D., Barouch D.H., Virgin H.W. Pathogenic simian immunodeficiency virus infection is associated with expansion of the enteric virome. Cell 2012, 151:253-266.
13. Hargitai R., Pankovics P., Kertesz A.M., Biro H., Boros A., Phan T.G., Delwart E., Reuter G. Detection and genetic characterization of a novel parvovirus distantly related to human bufavirus in domestic pigs. Arch. Virol. 2016.
14. Huang D.D., Wang W., Lu Q.B., Zhao J., Guo C.T., Wang H.Y., Zhang X.A., Tong Y.G., Liu W., Cao W.C. Identification of Bufavirus-1 and Bufavirus-3 in feces of patients with acute diarrhea, China. Sci. Rep. 2015, 5:13272.
15. Kemenesi G., Dallos B., Gorfol T., Estok P., Boldogh S., Kurucz K., Oldal M., Marton S., Banyai K., Jakab F. Genetic diversity and recombination within bufaviruses: detection of a novel strain in Hungarian bats. Infect. Genet. Evol.: J. Mol. Epidemiol. Evolut. Genet. Infect. Dis. 2015, 33:288-292.
16. Liu L., Schwarz L., Ullman K., Ahola H., Qiu Y., Ma Z., Hennig-Pauka I. Identification of a novel bufavirus in domestic pigs by a viral metagenomic approach. J. Gen. Virol. 2016.
17. Lole K.S., Bollinger R.C., Paranjape R.S., Gadkari D., Kulkarni S.S., Novak N.G., Ingersoll R., Sheppard H.W., Ray S.C. Full-length human immunodeficiency virus type 1 genomes from subtype C-infected seroconverters in India, with evidence of intersubtype recombination. J. Virol. 1999, 73:152-160.
18. Malik Y.S., Kumar N., Sharma K., Dhama K., Shabbir M.Z., Ganesh B., Kobayashi N., Banyai K. Epidemiology, phylogeny, and evolution of emerging enteric Picobirnaviruses of animal origin and their relationship to human strains. Biomed. Res. Int. 2014, 2014:780752.
19. Marchini A., Bonifati S., Scott E.M., Angelova A.L., Rommelaere J. Oncolytic parvoviruses: from basic virology to clinical applications. Virol. J. 2015, 12:6.
20. McKisic M.D., Lancki D.W., Otto G., Padrid P., Snook S., Cronin D.C., Lohmar P.D., Wong T., Fitch F.W. Identification and propagation of a putative immunosuppressive orphan parvovirus in cloned T cells. J. Immunol. 1993, 150:419-428.
21. McKisic M.D., Paturzo F.X., Gaertner D.J., Jacoby R.O., Smith A.L. A nonlethal rat parvovirus infection suppresses rat T lymphocyte effector functions. J. Immunol. 1995, 155:3979-3986.
22. Nault J.C., Datta S., Imbeaud S., Franconi A., Mallet M., Couchy G., Letouze E., Pilati C., Verret B., Blanc J.F., Balabaud C., Calderaro J., Laurent A., Letexier M., Bioulac-Sage P., Calvo F., Zucman-Rossi J. Recurrent AAV2-related insertional mutagenesis in human hepatocellular carcinomas. Nat. Genet. 2015, 47:1187-1193.
23. Norja P., Hokynar K., Aaltonen L.M., Chen R., Ranki A., Partio E.K., Kiviluoto O., Davidkin I., Leivo T., Eis-Hubinger A.M., Schneider B., Fischer H.P., Tolba R., Vapalahti O., Vaheri A., Soderlund-Venermo M., Hedman K. Bioportfolio: lifelong persistence of variant and prototypic erythrovirus DNA genomes in human tissue. Proc. Natl. Acad. Sci. USA 2006, 103:7450-7453.
24. Okamoto H. History of discoveries and pathogenicity of TT viruses. Curr. Top. Microbiol. Immunol. 2009, 331:1-20.
25. Parsyan A., Candotti D. Human erythrovirus B19 and blood transfusion - an update. Transfus Med. 2007, 17:263-278.
26. Phan T.G., Mori D., Deng X., Rajindrajith S., Ranawaka U., Fan Ng T.F., Bucardo-Rivera F., Orlandi P., Ahmed K., Delwart E. Small circular single stranded DNA viral genomes in unexplained cases of human encephalitis, diarrhea, and in untreated sewage. Virology 2015, 482:98-104.
27. Phan T.G., Sdiri-Loulizi K., Aouni M., Ambert-Balay K., Pothier P., Deng X., Delwart E. New parvovirus in child with unexplained diarrhea, Tunisia. Emerg. Infect. Dis. 2014, 20:1911-1913.
28. Phan T.G., Vo N.P., Bonkoungou I.J., Kapoor A., Barro N., O'Ryan M., Kapusinszky B., Wang C., Delwart E. Acute diarrhea in West African children: diverse enteric viruses and a novel parvovirus genus. J. Virol. 2012, 86:11024-11030.
29. Polcz M.E., Adamson L.A., Lu X., Chang M.N., Fowler L.J., Hobbs J.A. Increased IL-6 detection in adult and pediatric lymphoid tissue harboring parvovirus B19. J. Clin. Virol.: Off. Publ. Pan Am. Soc. Clin. Virol. 2013, 57:233-238.
30. Rommelaere J., Geletneky K., Angelova A.L., Daeffler L., Dinsart C., Kiprianova I., Schlehofer J.R., Raykov Z. Oncolytic parvoviruses as cancer therapeutics. Cytokine Growth Factor Rev. 2010, 21:185-195.
31. Sasaki M., Gonzalez G., Wada Y., Setiyono A., Handharyani E., Rahmadani I., Taha S., Adiani S., Latief M., Kholilullah Z.A., Subangkit M., Kobayashi S., Nakamura I., Kimura T., Orba Y., Ito K., Sawa H. Divergent bufavirus harboured in megabats represents a new lineage of parvoviruses. Sci. Rep. 2016, 6:24257.
32. Sasaki M., Orba Y., Anindita P.D., Ishii A., Ueno K., Hang'ombe B.M., Mweene A.S., Ito K., Sawa H. Distinct lineages of bufavirus in wild shrews and nonhuman primates. Emerg. Infect. Dis. 2015, 21:1230-1233.
33. Schildgen V., Malecki M., Tillmann R.L., Brockmann M., Schildgen O. The human bocavirus is associated with some lung and colorectal cancers and persists in solid tumors. PloS One 2013, 8:e68020.
34. Smits S.L., Schapendonk C.M., van Beek J., Vennema H., Schurch A.C., Schipper D., Bodewes R., Haagmans B.L., Osterhaus A.D., Koopmans M.P. New viruses in idiopathic human diarrhea cases, the Netherlands. Emerg. Infect. Dis. 2014, 20:1218-1222.
35. Spandole S., Cimponeriu D., Berca L.M., Mihaescu G. Human anelloviruses: an update of molecular, epidemiological and clinical aspects. Arch. Virol. 2015, 160:893-908.
36. Tamura K., Stecher G., Peterson D., Filipski A., Kumar S. MEGA6: molecular evolutionary genetics analysis version 6.0. Mol. Biol. Evol. 2013, 30:2725-2729.
37. Vaisanen E., Kuisma I., Phan T.G., Delwart E., Lappalainen M., Tarkka E., Hedman K., Soderlund-Venermo M. Bufavirus in feces of patients with gastroenteritis, Finland. Emerg. Infect. Dis. 2014, 20:1077-1080.
38. Victoria J.G., Kapoor A., Li L., Blinkova O., Slikas B., Wang C., Naeem A., Zaidi S., Delwart E. Metagenomic analyses of viruses in stool samples from children with acute flaccid paralysis. J. Virol. 2009, 83:4642-4651.
39. Vollmers E.M., D'Abramo A., Cotmore S.F., Tattersall P. Genome sequence of tumor virus x, a member of the genus protoparvovirus in the family parvoviridae. Genome Announc. 2014, 2.
40. Vollmers E.M., Tattersall P. Distinct host cell fates for human malignant melanoma targeted by oncolytic rodent parvoviruses. Virology 2013, 446:37-48.
41. Wang J.H., Zhang W.P., Liu H.X., Wang D., Li Y.F., Wang W.Q., Wang L., He F.R., Wang Z., Yan Q.G., Chen L.W., Huang G.S. Detection of human parvovirus B19 in papillary thyroid carcinoma. Br. J. Cancer 2008, 98:611-618.
42. Willemze R., Jaffe E.S., Burg G., Cerroni L., Berti E., Swerdlow S.H., Ralfkiaer E., Chimenti S., Diaz-Perez J.L., Duncan L.M., Grange F., Harris N.L., Kempf W., Kerl H., Kurrer M., Knobler R., Pimpinelli N., Sander C., Santucci M., Sterry W., Vermeer M.H., Wechsler J., Whittaker S., Meijer C.J. WHO-EORTC classification for cutaneous lymphomas. Blood 2005, 105:3768-3785.
43. Wu Z., Yang L., Ren X., He G., Zhang J., Yang J., Qian Z., Dong J., Sun L., Zhu Y., Du J., Yang F., Zhang S., Jin Q. Deciphering the bat virome catalog to better understand the ecological diversity of bat viruses and the bat origin of emerging infectious diseases. ISME J. 2015.
44. Yahiro T., Wangchuk S., Tshering K., Bandhari P., Zangmo S., Dorji T., Matsumoto T., Nishizono A., Soderlund-Venermo M., Ahmed K. Novel human bufavirus genotype 3 in children with severe diarrhea, Bhutan. Emerg. Infect. Dis. 2014, 20:1037-1039.
45. Yang S., Liu D., Wang Y., Qu F., He Y., Sun Z., Shen Q., Li W., Fu X., Deng X., Zhang W., Delwart E. Bufavirus Protoparvovirus in feces of wild rats in China. Virus Genes 2016, 52:130-133.
46. Zinn E., Vandenberghe L.H. Adeno-associated virus: fit to serve. Curr. Opin. Virol. 2014, 8:90-97.
47. Zádori Zoltán, Szelei József, Tijssen Peter SAT: a Late NS Protein of Porcine Parvovirus. Journal of Virology 2005, 79(20):13129-13138.