Acute diarrhea in west african children: Diverse enteric viruses and a novel parvovirus genus

Journal of Virology

Volumn 86, Issue 20, 2012, Pages 11024-11030

  Phan, Tung G ^a,b   Vo, Nguyen P ^a,c   Bonkoungou, Isidore J O ^d,e   Kapoor, Amit ^a,b   Barro, Nicolas ^e   O'Ryan, Miguel ^f   Kapusinszky, Beatrix ^a,b   Wang, Chunling ^g   Delwart, Eric ^a,b  

^a BLOOD SYSTEMS RESEARCH INSTITUTE   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

^c UNIVERSITY OF MEDICINE AND PHARMACY AT HO CHI MINH CITY   (Viet Nam)

^d Laboratoire National de Sante Publique   (Burkina Faso)

^e UNIVERSITÉ DE OUAGADOUGOU   (Burkina Faso)

^f UNIVERSITY OF CHILE   (Chile)

^g STANFORD UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

NONSTRUCTURAL PROTEIN 1; PROTEIN VP1;

ACUTE DIARRHEA; ADENO ASSOCIATED VIRUS; ADENOVIRUS; ANELLOVIRUS; ARTICLE; ASTROVIRUS; BOCAVIRUS; BUFAVIRUS; BURKINA FASO; CHILD; COSAVIRUS; ENTERIC VIRUS; ENTEROVIRUS; FECES ANALYSIS; GENETIC VARIABILITY; HEPATITIS B VIRUS; HUMAN; METAGENOMICS; NONHUMAN; NOROVIRUS; NUCLEOTIDE SEQUENCE; PARECHOVIRUS; PARVOVIRUS; POLYMERASE CHAIN REACTION; PRESCHOOL CHILD; PRIORITY JOURNAL; ROTAVIRUS; SAPOVIRUS; SEQUENCE ANALYSIS; VIRUS GENOME;

BASE SEQUENCE; BURKINA FASO; CAPSID PROTEINS; CHILD, PRESCHOOL; DIARRHEA; FECES; GENETIC VARIATION; GENOME, VIRAL; HUMANS; PARVOVIRIDAE INFECTIONS; PARVOVIRUS; SEQUENCE ANALYSIS, DNA; SEQUENCE ANALYSIS, RNA; VIRAL NONSTRUCTURAL PROTEINS;

ANIMALIA; ASTROVIRIDAE; DEPENDOVIRUS; ENTEROVIRUS; HEPATITIS B VIRUS; PARVOVIRIDAE; PARVOVIRUS; ROTAVIRUS;

EID: 84867518658     PISSN: 0022538X     EISSN: 10985514     Source Type: Journal    
DOI: 10.1128/JVI.01427-12     Document Type: Article

References (73)

1. Allander T. 2008. Human bocavirus. J. Clin. Virol. 41:29-33.
2. Allander T, et al. 2005. Cloning of a human parvovirus by molecular screening of respiratory tract samples. Proc. Natl. Acad. Sci. U. S. A. 102: 12891-12896.
3. Allander T, Emerson SU, Engle RE, Purcell RH, Bukh J. 2001. A virus discovery method incorporating DNase treatment and its application to the identification of two bovine parvovirus species. Proc. Natl. Acad. Sci. U. S. A. 98:11609-11614.
4. Anand A, Gray ES, Brown T, Clewley JP, Cohen BJ. 1987. Human parvovirus infection in pregnancy and hydrops fetalis. N. Engl. J. Med. 316:183-186.
5. Anderson MJ, Lewis E, Kidd IM, Hall SM, Cohen BJ. 1984. An outbreak of erythema infectiosum associated with human parvovirus infection. J. Hyg. 93:85-93.
6. Anderson MJ, et al. 1985. Experimental parvoviral infection in humans. J. Infect. Dis. 152:257-265.
7. Arthur JL, Higgins GD, Davidson GP, Givney RC, Ratcliff RM. 2009. A novel bocavirus associated with acute gastroenteritis in Australian children. PLoS Pathog. 5:e1000391. doi:10.1371/journal.ppat.1000391.
8. Benjamin LA, et al. 2011. Human parvovirus 4 as potential cause of encephalitis in children, India. Emerg. Infect. Dis. 17:1484-1487.
9. Blacklow NR, Hoggan MD, Rowe WP. 1967. Isolation of adenovirusassociated viruses from man. Proc. Natl. Acad. Sci. U. S. A. 58:1410-1415.
10. Blinkova O, et al. 2010. Novel circular DNA viruses in stool samples of wild-living chimpanzees. J. Gen. Virol. 91:74-86.
11. Blomström AL, et al. 2010. Studies of porcine circovirus type 2, porcine boca-like virus and torque teno virus indicate the presence of multiple viral infections in postweaning multisystemic wasting syndrome pigs. Virus Res. 152:59-64.
12. Bonkoungou IJ, et al. 2010. Epidemiology of rotavirus infection among young children with acute diarrhoea in Burkina Faso. BMC Pediatr. 10:94. doi:10.1186/1471-2431-10-94.
13. Bonkoungou IJ, et al. 2011. Genotype diversity of group A rotavirus strains in children with acute diarrhea in urban Burkina Faso, 2008-2010. J. Med. Virol. 83:1485-1490.
14. Brown KE. 2010. The expanding range of parvoviruses which infect humans. Rev. Med. Virol. 20:231-244.
15. Brown T, Anand A, Ritchie LD, Clewley JP, Reid TM. 1984. Intrauterine parvovirus infection associated with hydrops fetalis. Lancet ii:1033-1034.
16. Canuti M, et al. 2011. Two novel parvoviruses in frugivorous New and Old World bats. PLoS One 6:e29140. doi:10.1371/journal.pone.0029140.
17. Chen KC, et al. 1986. Complete nucleotide sequence and genome organization of bovine parvovirus. J. Virol. 60:1085-1097.
18. Chen MY, Yang SJ, Hung CC. 2011. Placental transmission of human parvovirus 4 in newborns with hydrops, Taiwan. Emerg. Infect. Dis. 17: 1954-1956.
19. Cheung AK, et al. 2010. Identification and molecular cloning of a novel porcine parvovirus. Arch. Virol. 155:801-806.
20. Chiu CY, et al. 2008. Identification of cardioviruses related to Theiler's murine encephalomyelitis virus in human infections. Proc. Natl. Acad. Sci. U. S. A. 105:14124-14129.
21. Chow BD, Esper FP. 2009. The human bocaviruses: a review and discussion of their role in infection. Clin. Lab Med. 29:695-713.
22. Cossart YE, Field AM, Cant B, Widdows D. 1975. Parvovirus-like particles in human sera. Lancet i:72-73.
23. Cotmore SF, Tattersall P. 1984. Characterization and molecular cloning of a human parvovirus genome. Science 226:1161-1165.
24. Cságola A, et al. 2012. Detection, prevalence and analysis of emerging porcine parvovirus infections. Arch. Virol. 157:1003-1010.
25. Donaldson EF, et al. 2010. Metagenomic analysis of the viromes of three North American bat species: viral diversity among different bat species that share a common habitat. J. Virol. 84:13004-13018.
26. Finkbeiner SR, Kirkwood CD, Wang D. 2008. Complete genome sequence of a highly divergent astrovirus isolated from a child with acute diarrhea. Virol. J. 5:117. doi:10.1186/1743-422X-5-117.
27. Finkbeiner SR, et al. 2009. Identification of a novel astrovirus (astrovirus VA1) associated with an outbreak of acute gastroenteritis. J. Virol. 83: 10836-10839.
28. Frickhofen N, et al. 1990. Persistent B19 parvovirus infection in patients infected with human immunodeficiency virus type 1 (HIV-1): a treatable cause of anemia in AIDS. Ann. Intern. Med. 113:926-933.
29. Fryer JF, Lucas SB, Padley D, Baylis SA. 2007. Parvoviruses PARV4/5 in hepatitis C virus-infected patient. Emerg. Infect. Dis. 13:175-176.
30. Ge X, et al. 2011. Genetic diversity of novel circular ssDNA viruses in bats in China. J. Gen. Virol. 92(Pt 11):2646-2653.
31. Greninger AL, et al. 2009. The complete genome of klassevirus-a novel picornavirus in pediatric stool. Virol. J. 6:82. doi:10.1186/1743-422X-6-82.
32. Hoelzer K, Parrish CR. 2010. The emergence of parvoviruses of carnivores. Vet. Res. 41:39. doi:10.1051/vetres/2010011.
33. Holtz LR, et al. 2009. Klassevirus 1, a previously undescribed member of the family Picornaviridae, is globally widespread. Virol. J. 6:86. doi: 10.1186/1743-422X-6-82.
34. Ilyina TV, Koonin EV. 1992. Conserved sequence motifs in the initiator proteins for rolling circle DNA replication encoded by diverse replicons from eubacteria, eucaryotes and archaebacteria. Nucleic Acids Res. 20: 3279-3285.
35. Jartti T, et al. 2012. Human bocavirus-the first 5 years. Rev. Med. Virol. 22:46-64.
36. Jones MS, et al. 2005. New DNA viruses identified in patients with acute viral infection syndrome. J. Virol. 79:8230-8236.
37. Jones MS, Lukashov VV, Ganac RD, Schnurr DP. 2007. Discovery of a novel human picornavirus in a stool sample from a pediatric patient presenting with fever of unknown origin. J. Clin. Microbiol. 45:2144-2150.
38. Kahn J. 2008. Human bocavirus: clinical significance and implications. Curr. Opin. Pediatr. 20:62-66.
39. Kapoor A, et al. 2009. A Newly Identified Bocavirus Species in Human Stool. J. Infect. Dis. 199:196-200.
40. Kapoor A, et al. 2008. A highly prevalent and genetically diversified Picornaviridae genus in South Asian children. Proc. Natl. Acad. Sci. U. S. A. 105:20482-20487.
41. Kapoor A, et al. 2009. Multiple novel astrovirus species in human stool. J. Gen. Virol. 90:2965-2972.
42. Kapoor A, et al. 2012. Characterization of novel canine bocaviruses and their association with respiratory disease. J. Gen. Virol. 93:341-346.
43. Kapoor A, et al. 2010. Identification and characterization of a new bocavirus species in gorillas. PLoS One 5:e11948. doi:10.1371/journal.pone.0011948.
44. Kapoor A, et al. 2011. Characterization of a canine homolog of human Aichivirus. J. Virol. 85:11520-11525.
45. Kapoor A, et al. 2010. Human bocaviruses are highly diverse, dispersed, recombination prone, and prevalent in enteric infections. J. Infect. Dis. 201:1633-1643.
46. King AMQ, Lefkowitz EJ, Adams MJ, Carstens EB. 2012. Virus taxonomy: ninth report of the International Committee on Taxonomy of Viruses. Elsevier Academic Press, New York, NY.
47. Lau SK, et al. 2008. Identification of novel porcine and bovine parvoviruses closely related to human parvovirus 4. J. Gen. Virol. 89:1840-1848.
48. Li B, et al. 2012. Complete genome sequence of a novel species of Porcine Bocavirus, PBoV5. J. Virol. 86:1286-1287.
49. Li L, et al. 2010. Multiple diverse circoviruses infect farm animals and are commonly found in human and chimpanzee feces. J. Virol. 84:1674-1682.
50. Li L, et al. 2010. Bat guano virome: predominance of dietary viruses from insects and plants plus novel mammalian viruses. J. Virol. 84:6955-6965.
51. Li L, et al. 2009. A Novel Picornavirus Associated With Gastroenteritis. J. Virol. 83:12002-12006.
52. Li L, et al. 2011. Viruses in diarrhoeic dogs include novel kobuviruses and sapoviruses. J. Gen. Virol. 92:2534-2541.
53. Li L, et al. 2011. The fecal viral flora of California sea lions. J. Virol. 85:9909-9917.
54. Manning A, Willey SJ, Bell JE, Simmonds P. 2007. Comparison of tissue distribution, persistence, and molecular epidemiology of parvovirus B19 and novel human parvoviruses PARV4 and human bocavirus. J. Infect. Dis. 195:1345-1352.
55. Manteufel J, Truyen U. 2008. Animal bocaviruses: a brief review. Intervirology 51:328-334.
56. Panning M, et al. 2010. Novel human parvovirus 4 genotype 3 in infants, Ghana. Emerg. Infect. Dis. 16:1143-1146.
57. Phan TGAK, et al. 2011. The Fecal Viral Flora of Wild Rodents. PLoS Pathog. 7:e1002218. doi:10.1371/journal.ppat.1002218.
58. Phan TG, et al. 2012. A third gyrovirus species in human faeces. J. Gen. Virol. 93(Pt 6):1356-1361.
59. Plummer FA, et al. 1985. An erythema infectiosum-like illness caused by human parvovirus infection. N. Engl. J. Med. 313:74-79.
60. Reuter G, et al. 2012. Astrovirus in wild boars (Sus scrofa) in Hungary. Arch. Virol. 157:1143-1147.
61. Reuter G, Pankovics P, Delwart E, andBoros Á. 2012. Identification of a novel astrovirus in domestic sheep in Hungary. Arch. Virol. 157:323-327.
62. Schildgen O, et al. 2008. Human bocavirus: passenger or pathogen in acute respiratory tract infections? Clin. Microbiol. Rev. 21:291-304.
63. Schwartz D, Green B, Carmichael LE, Parrish CR. 2002. The canine minute virus (minute virus of canines) is a distinct parvovirus that is most similar to bovine parvovirus. Virology 302:219-223.
64. Shan T, et al. 2011. The fecal virome of pigs on a high-density farm. J. Virol. 85:11697-11708.
65. Sharp CP, Lail A, Donfield S, Gomperts ED, Simmonds P. 2012. Virologic and clinical features of primary infection with human parvovirus 4 in subjects with hemophilia: frequent transmission by virally inactivated clotting factor concentrates. Transfusion 52:1482-1489.
66. Sharp CP, et al. 2009. High frequencies of exposure to the novel human parvovirus PARV4 in hemophiliacs and injection drug users, as detected by a serological assay for PARV4 antibodies. J. Infect. Dis. 200:1119-1125.
67. Sharp CP, et al. 2010. Widespread infection with homologues of human parvoviruses B19, PARV4, and human bocavirus of chimpanzees and gorillas in the wild. J. Virol. 84:10289-10296.
68. Simmonds P, et al. 2008. A third genotype of the human parvovirus PARV4 in sub-Saharan Africa. J. Gen. Virol. 89:2299-2302.
69. Tse H, et al. 2011. Discovery and genomic characterization of a novel ovine partetravirus and a new genotype of bovine partetravirus. PLoS One 6:e25619. doi:10.1371/journal.pone.0025619.
70. Victoria JG, et al. 2009. Metagenomic analyses of viruses in stool samples from children with acute flaccid paralysis. J. Virol. 83:4642-4651.
71. Walker JE, Saraste M, Runswick MJ, Gay NJ. 1982. Distantly related sequences in the alpha- and beta-subunits of ATP synthase, myosin, kinases and other ATP-requiring enzymes and a common nucleotide binding fold. EMBO J. 1:945-951.
72. Yang SJ, Hung CC, Chang SY, Lee KL, Chen MY. 2011. Immunoglobulin G and M antibodies to human parvovirus 4 (PARV4) are frequently detected in patients with HIV-1 infection. J. Clin. Virol. 51:64-67.
73. Yu X, et al. 2012. High prevalence of human parvovirus 4 infection in HBV and HCV infected individuals in shanghai. PLoS One 7:e29474. doi: 10.1371/journal.pone.0029474