-
1
-
-
33746439461
-
High-throughput screening methodology for the directed evolution of glycosyltransferases
-
Aharoni A, Thieme K, Chiu CP, Buchini S, Lairson LL, Chen H, Strynadka NC, Wakarchuk WW, Withers SG. 2006. High-throughput screening methodology for the directed evolution of glycosyltransferases. Nat Methods 3(8):609–614.
-
(2006)
Nat Methods
, vol.3
, Issue.8
, pp. 609-614
-
-
Aharoni, A.1
Thieme, K.2
Chiu, C.P.3
Buchini, S.4
Lairson, L.L.5
Chen, H.6
Strynadka, N.C.7
Wakarchuk, W.W.8
Withers, S.G.9
-
2
-
-
84893108227
-
Structure-function relationships of membrane-associated GT-B glycosyltransferases
-
Albesa-Jove D, Giganti D, Jackson M, Alzari PM, Guerin ME. 2014. Structure-function relationships of membrane-associated GT-B glycosyltransferases. Glycobiology 24(2):108–124.
-
(2014)
Glycobiology
, vol.24
, Issue.2
, pp. 108-124
-
-
Albesa-Jove, D.1
Giganti, D.2
Jackson, M.3
Alzari, P.M.4
Guerin, M.E.5
-
3
-
-
80053393387
-
Physiology of consumption of human milk oligosaccharides by infant gut-associated bifidobacteria
-
Asakuma S, Hatakeyama E, Urashima T, Yoshida E, Katayama T, Yamamoto K, Kumagai H, Ashida H, Hirose J, Kitaoka M. 2011. Physiology of consumption of human milk oligosaccharides by infant gut-associated bifidobacteria. J Biol Chem 286(40):34583–34592.
-
(2011)
J Biol Chem
, vol.286
, Issue.40
, pp. 34583-34592
-
-
Asakuma, S.1
Hatakeyama, E.2
Urashima, T.3
Yoshida, E.4
Katayama, T.5
Yamamoto, K.6
Kumagai, H.7
Ashida, H.8
Hirose, J.9
Kitaoka, M.10
-
4
-
-
68749094075
-
Two distinct alpha-L-fucosidases from Bifidobacterium bifidum are essential for the utilization of fucosylated milk oligosaccharides and glycoconjugates
-
Ashida H, Miyake A, Kiyohara M, Wada J, Yoshida E, Kumagai H, Katayama T, Yamamoto K. 2009. Two distinct alpha-L-fucosidases from Bifidobacterium bifidum are essential for the utilization of fucosylated milk oligosaccharides and glycoconjugates. Glycobiology 19(9):1010–1017.
-
(2009)
Glycobiology
, vol.19
, Issue.9
, pp. 1010-1017
-
-
Ashida, H.1
Miyake, A.2
Kiyohara, M.3
Wada, J.4
Yoshida, E.5
Kumagai, H.6
Katayama, T.7
Yamamoto, K.8
-
5
-
-
84876816081
-
Construction of Escherichia coli strains with chromosomally integrated expression cassettes for the synthesis of 2′-fucosyllactose
-
Baumgartner F, Seitz L, Sprenger GA, Albermann C. 2013. Construction of Escherichia coli strains with chromosomally integrated expression cassettes for the synthesis of 2′-fucosyllactose. Microb Cell Fact 12:40.
-
(2013)
Microb Cell Fact
, vol.12
, pp. 40
-
-
Baumgartner, F.1
Seitz, L.2
Sprenger, G.A.3
Albermann, C.4
-
6
-
-
84864465909
-
Human milk oligosaccharides: Every baby needs a sugar mama
-
Bode L. 2012. Human milk oligosaccharides: Every baby needs a sugar mama. Glycobiology 22(9):1147–1162.
-
(2012)
Glycobiology
, vol.22
, Issue.9
, pp. 1147-1162
-
-
Bode, L.1
-
7
-
-
18044397860
-
Mathematical expressions useful in the construction, description and evaluation of protein libraries
-
Bosley AD, Ostermeier M. 2005. Mathematical expressions useful in the construction, description and evaluation of protein libraries. Biomol Eng 22(1–3):57–61.
-
(2005)
Biomol Eng
, vol.22
, Issue.1-3
, pp. 57-61
-
-
Bosley, A.D.1
Ostermeier, M.2
-
9
-
-
0034917101
-
Fucosylated human milk oligosaccharides vary between individuals and over the course of lactation
-
Chaturvedi P, Warren CD, Altaye M, Morrow AL, Ruiz-Palacios G, Pickering LK, Newburg DS. 2001. Fucosylated human milk oligosaccharides vary between individuals and over the course of lactation. Glycobiology 11(5):365–372.
-
(2001)
Glycobiology
, vol.11
, Issue.5
, pp. 365-372
-
-
Chaturvedi, P.1
Warren, C.D.2
Altaye, M.3
Morrow, A.L.4
Ruiz-Palacios, G.5
Pickering, L.K.6
Newburg, D.S.7
-
10
-
-
84893085090
-
Protein engineering of alpha2,3/2,6-sialyltransferase to improve the yield and productivity of in vitro sialyllactose synthesis
-
Choi YH, Kim JH, Park JH, Lee N, Kim DH, Jang KS, Park IH, Kim BG. 2014. Protein engineering of alpha2,3/2,6-sialyltransferase to improve the yield and productivity of in vitro sialyllactose synthesis. Glycobiology 24(2):159–169.
-
(2014)
Glycobiology
, vol.24
, Issue.2
, pp. 159-169
-
-
Choi, Y.H.1
Kim, J.H.2
Park, J.H.3
Lee, N.4
Kim, D.H.5
Jang, K.S.6
Park, I.H.7
Kim, B.G.8
-
11
-
-
33646078813
-
Human milk oligosaccharides inhibit the adhesion to Caco-2 cells of diarrheal pathogens: Escherichia coli, Vibrio cholerae, and Salmonella fyris
-
Coppa GV, Zampini L, Galeazzi T, Facinelli B, Ferrante L, Capretti R, Orazio G. 2006. Human milk oligosaccharides inhibit the adhesion to Caco-2 cells of diarrheal pathogens: Escherichia coli, Vibrio cholerae, and Salmonella fyris. Pediatr Res 59(3):377–382.
-
(2006)
Pediatr Res
, vol.59
, Issue.3
, pp. 377-382
-
-
Coppa, G.V.1
Zampini, L.2
Galeazzi, T.3
Facinelli, B.4
Ferrante, L.5
Capretti, R.6
Orazio, G.7
-
12
-
-
84876732154
-
Strategies for the discovery and engineering of enzymes for biocatalysis
-
Davids T, Schmidt M, Bottcher D, Bornscheuer UT. 2013. Strategies for the discovery and engineering of enzymes for biocatalysis. Curr Opin Chem Biol 17(2):215–220.
-
(2013)
Curr Opin Chem Biol
, vol.17
, Issue.2
, pp. 215-220
-
-
Davids, T.1
Schmidt, M.2
Bottcher, D.3
Bornscheuer, U.T.4
-
13
-
-
33746280793
-
Large-scale synthesis of H-antigen oligosaccharides by expressing Helicobacter pylori alpha1,2-fucosyltransferase in metabolically engineered Escherichia coli cells
-
Drouillard S, Driguez H, Samain E. 2006. Large-scale synthesis of H-antigen oligosaccharides by expressing Helicobacter pylori alpha1,2-fucosyltransferase in metabolically engineered Escherichia coli cells. Angew Chem Int Ed Engl 45(11):1778–1780.
-
(2006)
Angew Chem Int Ed Engl
, vol.45
, Issue.11
, pp. 1778-1780
-
-
Drouillard, S.1
Driguez, H.2
Samain, E.3
-
14
-
-
1842713367
-
Assessment of the two Helicobacter pylori alpha-1,3-fucosyltransferase ortholog genes for the large-scale synthesis of LewisX human milk oligosaccharides by metabolically engineered Escherichia coli
-
Dumon C, Samain E, Priem B. 2004. Assessment of the two Helicobacter pylori alpha-1,3-fucosyltransferase ortholog genes for the large-scale synthesis of LewisX human milk oligosaccharides by metabolically engineered Escherichia coli. Biotechnol Prog 20(2):412–419.
-
(2004)
Biotechnol Prog
, vol.20
, Issue.2
, pp. 412-419
-
-
Dumon, C.1
Samain, E.2
Priem, B.3
-
15
-
-
84865306330
-
Directed enzyme evolution: Beyond the low-hanging fruit
-
Goldsmith M, Tawfik DS. 2012. Directed enzyme evolution: Beyond the low-hanging fruit. Curr Opin Struct Biol 22(4):406–412.
-
(2012)
Curr Opin Struct Biol
, vol.22
, Issue.4
, pp. 406-412
-
-
Goldsmith, M.1
Tawfik, D.S.2
-
17
-
-
58549088752
-
Engineering a function into a glycosyltransferase
-
Krauth C, Fedoryshyn M, Schleberger C, Luzhetskyy A, Bechthold A. 2009. Engineering a function into a glycosyltransferase. Chem Biol 16(1):28–35.
-
(2009)
Chem Biol
, vol.16
, Issue.1
, pp. 28-35
-
-
Krauth, C.1
Fedoryshyn, M.2
Schleberger, C.3
Luzhetskyy, A.4
Bechthold, A.5
-
18
-
-
49449087287
-
Glycosyltransferases: Structures, functions, and mechanisms
-
Lairson LL, Henrissat B, Davies GJ, Withers SG. 2008. Glycosyltransferases: Structures, functions, and mechanisms. Annu Rev Biochem 77:521–555.
-
(2008)
Annu Rev Biochem
, vol.77
, pp. 521-555
-
-
Lairson, L.L.1
Henrissat, B.2
Davies, G.J.3
Withers, S.G.4
-
19
-
-
84887104357
-
Cloning and functional characterization of an alpha-1,3-fucosyltransferase from Bacteroides fragilis
-
Lee JH, Pandey RP, Kim D, Sohng JK. 2013. Cloning and functional characterization of an alpha-1,3-fucosyltransferase from Bacteroides fragilis. Biotechnol Bioprocess Eng 18(5):843–849.
-
(2013)
Biotechnol Bioprocess Eng
, vol.18
, Issue.5
, pp. 843-849
-
-
Lee, J.H.1
Pandey, R.P.2
Kim, D.3
Sohng, J.K.4
-
20
-
-
84862215539
-
Whole cell biosynthesis of a functional oligosaccharide, 2′-fucosyllactose, using engineered Escherichia coli
-
Lee WH, Pathanibul P, Quarterman J, Jo JH, Han NS, Miller MJ, Jin YS, Seo JH. 2012. Whole cell biosynthesis of a functional oligosaccharide, 2′-fucosyllactose, using engineered Escherichia coli. Microb Cell Fact 11:48.
-
(2012)
Microb Cell Fact
, vol.11
, pp. 48
-
-
Lee, W.H.1
Pathanibul, P.2
Quarterman, J.3
Jo, J.H.4
Han, N.S.5
Miller, M.J.6
Jin, Y.S.7
Seo, J.H.8
-
21
-
-
33745606217
-
Carboxyl terminus of Helicobacter pylori alpha1,3-fucosyltransferase determines the structure and stability
-
Lin SW, Yuan TM, Li JR, Lin CH. 2006. Carboxyl terminus of Helicobacter pylori alpha1,3-fucosyltransferase determines the structure and stability. Biochemistry 45(26):8108–8116.
-
(2006)
Biochemistry
, vol.45
, Issue.26
, pp. 8108-8116
-
-
Lin, S.W.1
Yuan, T.M.2
Li, J.R.3
Lin, C.H.4
-
22
-
-
78349313517
-
Beyond directed evolution-semi-rational protein engineering and design
-
Lutz S. 2010. Beyond directed evolution-semi-rational protein engineering and design. Curr Opin Biotechnol 21(6):734–743.
-
(2010)
Curr Opin Biotechnol
, vol.21
, Issue.6
, pp. 734-743
-
-
Lutz, S.1
-
23
-
-
33646539173
-
Purification, kinetic characterization, and mapping of the minimal catalytic domain and the key polar groups of Helicobacter pylori alpha-(1,3/1,4)-fucosyltransferases
-
Ma B, Audette GF, Lin S, Palcic MM, Hazes B, Taylor DE. 2006. Purification, kinetic characterization, and mapping of the minimal catalytic domain and the key polar groups of Helicobacter pylori alpha-(1,3/1,4)-fucosyltransferases. J Biol Chem 281(10):6385–6394.
-
(2006)
J Biol Chem
, vol.281
, Issue.10
, pp. 6385-6394
-
-
Ma, B.1
Audette, G.F.2
Lin, S.3
Palcic, M.M.4
Hazes, B.5
Taylor, D.E.6
-
24
-
-
84898988775
-
Recent advances in human milk glycobiology
-
Newburg DS, Grave G. 2014. Recent advances in human milk glycobiology. Pediatr Res 75(5):675–679.
-
(2014)
Pediatr Res
, vol.75
, Issue.5
, pp. 675-679
-
-
Newburg, D.S.1
Grave, G.2
-
25
-
-
33144463744
-
Cytidine 5′-monophosphate (CMP)-induced structural changes in a multifunctional sialyltransferase from Pasteurella multocida
-
Ni LS, Sung MC, Yu H, Chokhawala H, Chen X, Fisher AJ. 2006. Cytidine 5′-monophosphate (CMP)-induced structural changes in a multifunctional sialyltransferase from Pasteurella multocida. Biochemistry 45(7):2139–2148.
-
(2006)
Biochemistry
, vol.45
, Issue.7
, pp. 2139-2148
-
-
Ni, L.S.1
Sung, M.C.2
Yu, H.3
Chokhawala, H.4
Chen, X.5
Fisher, A.J.6
-
26
-
-
58549102566
-
Expanding substrate specificity of GT-B fold glycosyltransferase via domain swapping and high-throughput screening
-
Park SH, Park HY, Sohng JK, Lee HC, Liou K, Yoon YJ, Kim BG. 2009. Expanding substrate specificity of GT-B fold glycosyltransferase via domain swapping and high-throughput screening. Biotechnol Bioeng 102(4):988–994.
-
(2009)
Biotechnol Bioeng
, vol.102
, Issue.4
, pp. 988-994
-
-
Park, S.H.1
Park, H.Y.2
Sohng, J.K.3
Lee, H.C.4
Liou, K.5
Yoon, Y.J.6
Kim, B.G.7
-
27
-
-
67849130559
-
HotSpot Wizard: A web server for identification of hot spots in protein engineering
-
Pavelka A, Chovancova E, Damborsky J. 2009. HotSpot Wizard: A web server for identification of hot spots in protein engineering. Nucleic Acids Res 37(Web Server issue):W376–W383.
-
(2009)
Nucleic Acids Res
, vol.37
, Issue.Web Server issue
, pp. W376-W383
-
-
Pavelka, A.1
Chovancova, E.2
Damborsky, J.3
-
28
-
-
11844280851
-
Substrate-induced conformational changes in glycosyltransferases
-
Qasba PK, Ramakrishnan B, Boeggeman E. 2005. Substrate-induced conformational changes in glycosyltransferases. Trends Biochem Sci 30(1):53–62.
-
(2005)
Trends Biochem Sci
, vol.30
, Issue.1
, pp. 53-62
-
-
Qasba, P.K.1
Ramakrishnan, B.2
Boeggeman, E.3
-
29
-
-
34248567845
-
Iterative saturation mutagenesis (ISM) for rapid directed evolution of functional enzymes
-
Reetz MT, Carballeira JD. 2007. Iterative saturation mutagenesis (ISM) for rapid directed evolution of functional enzymes. Nat Protoc 2(4):891–903.
-
(2007)
Nat Protoc
, vol.2
, Issue.4
, pp. 891-903
-
-
Reetz, M.T.1
Carballeira, J.D.2
-
30
-
-
0027136282
-
Comparative protein modelling by satisfaction of spatial restraints
-
Sali A, Blundell TL. 1993. Comparative protein modelling by satisfaction of spatial restraints. J Mol Biol 234(3):779–815.
-
(1993)
J Mol Biol
, vol.234
, Issue.3
, pp. 779-815
-
-
Sali, A.1
Blundell, T.L.2
-
31
-
-
34248186582
-
Structure and mechanism of Helicobacter pylori fucosyltransferase. A basis for lipopolysaccharide variation and inhibitor design
-
Sun HY, Lin SW, Ko TP, Pan JF, Liu CL, Lin CN, Wang AH, Lin CH. 2007. Structure and mechanism of Helicobacter pylori fucosyltransferase. A basis for lipopolysaccharide variation and inhibitor design. J Biol Chem 282(13):9973–9982.
-
(2007)
J Biol Chem
, vol.282
, Issue.13
, pp. 9973-9982
-
-
Sun, H.Y.1
Lin, S.W.2
Ko, T.P.3
Pan, J.F.4
Liu, C.L.5
Lin, C.N.6
Wang, A.H.7
Lin, C.H.8
-
32
-
-
84884591440
-
Bioengineered 2′-fucosyllactose and 3-fucosyllactose inhibit the adhesion of Pseudomonas aeruginosa and enteric pathogens to human intestinal and respiratory cell lines
-
Weichert S, Jennewein S, Hufner E, Weiss C, Borkowski J, Putze J, Schroten H. 2013. Bioengineered 2′-fucosyllactose and 3-fucosyllactose inhibit the adhesion of Pseudomonas aeruginosa and enteric pathogens to human intestinal and respiratory cell lines. Nutr Res 33(10):831–838.
-
(2013)
Nutr Res
, vol.33
, Issue.10
, pp. 831-838
-
-
Weichert, S.1
Jennewein, S.2
Hufner, E.3
Weiss, C.4
Borkowski, J.5
Putze, J.6
Schroten, H.7
-
33
-
-
70349199628
-
Design parameters to control synthetic gene expression in Escherichia coli
-
Welch M, Govindarajan S, Ness JE, Villalobos A, Gurney A, Minshull J, Gustafsson C. 2009. Design parameters to control synthetic gene expression in Escherichia coli. PLoS ONE 4(9):e7002.
-
(2009)
PLoS ONE
, vol.4
, Issue.9
-
-
Welch, M.1
Govindarajan, S.2
Ness, J.E.3
Villalobos, A.4
Gurney, A.5
Minshull, J.6
Gustafsson, C.7
-
34
-
-
34548685673
-
Expanding the promiscuity of a natural-product glycosyltransferase by directed evolution
-
Williams GJ, Zhang C, Thorson JS. 2007. Expanding the promiscuity of a natural-product glycosyltransferase by directed evolution. Nat Chem Biol 3(10):657–662.
-
(2007)
Nat Chem Biol
, vol.3
, Issue.10
, pp. 657-662
-
-
Williams, G.J.1
Zhang, C.2
Thorson, J.S.3
-
35
-
-
77955042704
-
Fluorescence activated cell sorting as a general ultra-high-throughput screening method for directed evolution of glycosyltransferases
-
Yang GY, Rich JR, Gilbert M, Wakarchuk WW, Feng Y, Withers SG. 2010. Fluorescence activated cell sorting as a general ultra-high-throughput screening method for directed evolution of glycosyltransferases. J Am Chem Soc 132(30):10570–10577.
-
(2010)
J Am Chem Soc
, vol.132
, Issue.30
, pp. 10570-10577
-
-
Yang, G.Y.1
Rich, J.R.2
Gilbert, M.3
Wakarchuk, W.W.4
Feng, Y.5
Withers, S.G.6
-
36
-
-
84871967105
-
The principal fucosylated oligosaccharides of human milk exhibit prebiotic properties on cultured infant microbiota
-
Yu ZT, Chen C, Kling DE, Liu B, McCoy JM, Merighi M, Heidtman M, Newburg DS. 2013a. The principal fucosylated oligosaccharides of human milk exhibit prebiotic properties on cultured infant microbiota. Glycobiology 23(2):169–177.
-
(2013)
Glycobiology
, vol.23
, Issue.2
, pp. 169-177
-
-
Yu, Z.T.1
Chen, C.2
Kling, D.E.3
Liu, B.4
McCoy, J.M.5
Merighi, M.6
Heidtman, M.7
Newburg, D.S.8
-
37
-
-
84886032272
-
Utilization of major fucosylated and sialylated human milk oligosaccharides by isolated human gut microbes
-
Yu ZT, Chen C, Newburg DS. 2013b. Utilization of major fucosylated and sialylated human milk oligosaccharides by isolated human gut microbes. Glycobiology 23(11):1281–1292.
-
(2013)
Glycobiology
, vol.23
, Issue.11
, pp. 1281-1292
-
-
Yu, Z.T.1
Chen, C.2
Newburg, D.S.3
-
38
-
-
79952742717
-
Human milk glycobiome and its impact on the infant gastrointestinal microbiota
-
Zivkovic AM, German JB, Lebrilla CB, Mills DA. 2011. Human milk glycobiome and its impact on the infant gastrointestinal microbiota. Proc Natl Acad Sci USA 108(Suppl 1):4653–4658.
-
(2011)
Proc Natl Acad Sci USA
, vol.108
, pp. 4653-4658
-
-
Zivkovic, A.M.1
German, J.B.2
Lebrilla, C.B.3
Mills, D.A.4
|