-
1
-
-
64749094310
-
The cancer genome
-
Stratton, M. R., Campbell, P. J. and Futreal, P. A. (2009) The cancer genome. Nature, 458, 719-724.
-
(2009)
Nature
, vol.458
, pp. 719-724
-
-
Stratton, M.R.1
Campbell, P.J.2
Futreal, P.A.3
-
2
-
-
84875758730
-
Lessons from the cancer genome
-
Garraway, L. A. and Lander, E. S. (2013) Lessons from the cancer genome. Cell, 153, 17-37.
-
(2013)
Cell
, vol.153
, pp. 17-37
-
-
Garraway, L.A.1
Lander, E.S.2
-
3
-
-
84875490185
-
Cancer genome landscapes
-
Vogelstein, B., Papadopoulos, N., Velculescu, V. E., Zhou, S., Diaz, L. A. Jr and Kinzler, K. W. (2013) Cancer genome landscapes. Science, 339, 1546-1558.
-
(2013)
Science
, vol.339
, pp. 1546-1558
-
-
Vogelstein, B.1
Papadopoulos, N.2
Velculescu, V.E.3
Zhou, S.4
Diaz, L.A.5
Kinzler, K.W.6
-
4
-
-
75549089911
-
Network of Cancer Genes: A web resource to analyze duplicability, orthology and network properties of cancer genes
-
Syed, A. S., D'Antonio, M. and Ciccarelli, F. D. (2010) Network of Cancer Genes: a web resource to analyze duplicability, orthology and network properties of cancer genes. Nucleic Acids Res., 38, D670-D675.
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. D670-D675
-
-
Syed, A.S.1
D'Antonio, M.2
Ciccarelli, F.D.3
-
5
-
-
1542515338
-
A census of human cancer genes
-
Futreal, P. A., Coin, L., Marshall, M., Down, T., Hubbard, T., Wooster, R., Rahman, N. and Stratton, M. R. (2004) A census of human cancer genes. Nat. Rev. Cancer, 4, 177-183.
-
(2004)
Nat. Rev. Cancer
, vol.4
, pp. 177-183
-
-
Futreal, P.A.1
Coin, L.2
Marshall, M.3
Down, T.4
Hubbard, T.5
Wooster, R.6
Rahman, N.7
Stratton, M.R.8
-
6
-
-
84880507665
-
Mutational heterogeneity in cancer and the search for new cancer-associated genes
-
Lawrence, M. S., Stojanov, P., Polak, P., Kryukov, G. V., Cibulskis, K., Sivachenko, A., Carter, S. L., Stewart, C., Mermel, C. H., Roberts, S. A. et al. (2013) Mutational heterogeneity in cancer and the search for new cancer-associated genes. Nature, 499, 214-218.
-
(2013)
Nature
, vol.499
, pp. 214-218
-
-
Lawrence, M.S.1
Stojanov, P.2
Polak, P.3
Kryukov, G.V.4
Cibulskis, K.5
Sivachenko, A.6
Carter, S.L.7
Stewart, C.8
Mermel, C.H.9
Roberts, S.A.10
-
7
-
-
84885735554
-
Mutational landscape and significance across 12 major cancer types
-
Kandoth, C., McLellan, M. D., Vandin, F., Ye, K., Niu, B., Lu, C., Xie, M., Zhang, Q., McMichael, J. F., Wyczalkowski, M. A. et al. (2013) Mutational landscape and significance across 12 major cancer types. Nature, 502, 333-339.
-
(2013)
Nature
, vol.502
, pp. 333-339
-
-
Kandoth, C.1
McLellan, M.D.2
Vandin, F.3
Ye, K.4
Niu, B.5
Lu, C.6
Xie, M.7
Zhang, Q.8
McMichael, J.F.9
Wyczalkowski, M.A.10
-
8
-
-
84906554359
-
NCG 4.0: The network of cancer genes in the era of massive mutational screenings of cancer genomes
-
An, O., Pendino, V., D'Antonio, M., Ratti, E., Gentilini, M. and Ciccarelli, F. D. (2014) NCG 4.0: the network of cancer genes in the era of massive mutational screenings of cancer genomes. Database, 2014, bau015.
-
(2014)
Database
, vol.2014
, pp. bau015
-
-
An, O.1
Pendino, V.2
D'Antonio, M.3
Ratti, E.4
Gentilini, M.5
Ciccarelli, F.D.6
-
9
-
-
84864598664
-
MuSiC: Identifying mutational significance in cancer genomes
-
Dees, N. D., Zhang, Q., Kandoth, C., Wendl, M. C., Schierding, W., Koboldt, D. C., Mooney, T. B., Callaway, M. B., Dooling, D., Mardis, E. R. et al. (2012) MuSiC: identifying mutational significance in cancer genomes. Genome Res., 22, 1589-1598.
-
(2012)
Genome Res.
, vol.22
, pp. 1589-1598
-
-
Dees, N.D.1
Zhang, Q.2
Kandoth, C.3
Wendl, M.C.4
Schierding, W.5
Koboldt, D.C.6
Mooney, T.B.7
Callaway, M.B.8
Dooling, D.9
Mardis, E.R.10
-
10
-
-
0043237477
-
A novel giant gene CSMD3 encoding a protein with CUB and sushi multiple domains: A candidate gene for benign adult familial myoclonic epilepsy on human chromosome 8q23.3-q24.1
-
Shimizu, A., Asakawa, S., Sasaki, T., Yamazaki, S., Yamagata, H., Kudoh, J., Minoshima, S., Kondo, I. and Shimizu, N. (2003) A novel giant gene CSMD3 encoding a protein with CUB and sushi multiple domains: a candidate gene for benign adult familial myoclonic epilepsy on human chromosome 8q23.3-q24.1. Biochem. Biophys. Res. Commun., 309, 143-154.
-
(2003)
Biochem. Biophys. Res. Commun.
, vol.309
, pp. 143-154
-
-
Shimizu, A.1
Asakawa, S.2
Sasaki, T.3
Yamazaki, S.4
Yamagata, H.5
Kudoh, J.6
Minoshima, S.7
Kondo, I.8
Shimizu, N.9
-
11
-
-
84865168855
-
Identification of somatic mutations in non-small cell lung carcinomas using whole-exome sequencing
-
Liu, P., Morrison, C., Wang, L., Xiong, D., Vedell, P., Cui, P., Hua, X., Ding, F., Lu, Y., James, M. et al. (2012) Identification of somatic mutations in non-small cell lung carcinomas using whole-exome sequencing. Carcinogenesis, 33, 1270-1276.
-
(2012)
Carcinogenesis
, vol.33
, pp. 1270-1276
-
-
Liu, P.1
Morrison, C.2
Wang, L.3
Xiong, D.4
Vedell, P.5
Cui, P.6
Hua, X.7
Ding, F.8
Lu, Y.9
James, M.10
-
12
-
-
49849100187
-
Low duplicability and network fragility of cancer genes
-
Rambaldi, D., Giorgi, F. M., Capuani, F., Ciliberto, A. and Ciccarelli, F. D. (2008) Low duplicability and network fragility of cancer genes. Trends Genet., 24, 427-430.
-
(2008)
Trends Genet.
, vol.24
, pp. 427-430
-
-
Rambaldi, D.1
Giorgi, F.M.2
Capuani, F.3
Ciliberto, A.4
Ciccarelli, F.D.5
-
13
-
-
84891767394
-
RefSeq: An update on mammalian reference sequences
-
Pruitt, K. D., Brown, G. R., Hiatt, S. M., Thibaud-Nissen, F., Astashyn, A., Ermolaeva, O., Farrell, C. M., Hart, J., Landrum, M. J., McGarvey, K. M. et al. (2014) RefSeq: an update on mammalian reference sequences. Nucleic Acids Res., 42, D756-D763.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. D756-D763
-
-
Pruitt, K.D.1
Brown, G.R.2
Hiatt, S.M.3
Thibaud-Nissen, F.4
Astashyn, A.5
Ermolaeva, O.6
Farrell, C.M.7
Hart, J.8
Landrum, M.J.9
McGarvey, K.M.10
-
14
-
-
84891757311
-
EggNOG v4.0: Nested orthology inference across 3686 organisms
-
Powell, S., Forslund, K., Szklarczyk, D., Trachana, K., Roth, A., Huerta-Cepas, J., Gabaldon, T., Rattei, T., Creevey, C., Kuhn, M. et al. (2014) eggNOG v4.0: nested orthology inference across 3686 organisms. Nucleic Acids Res., 42, D231-D239.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. D231-D239
-
-
Powell, S.1
Forslund, K.2
Szklarczyk, D.3
Trachana, K.4
Roth, A.5
Huerta-Cepas, J.6
Gabaldon, T.7
Rattei, T.8
Creevey, C.9
Kuhn, M.10
-
15
-
-
79955555644
-
Modification of gene duplicability during the evolution of protein interaction network
-
D'Antonio, M. and Ciccarelli, F. D. (2011) Modification of gene duplicability during the evolution of protein interaction network. PLoS Comput. Biol., 7, e1002029.
-
(2011)
PLoS Comput. Biol.
, vol.7
, pp. e1002029
-
-
D'Antonio, M.1
Ciccarelli, F.D.2
-
16
-
-
56449113261
-
An ancient evolutionary origin of genes associated with human genetic diseases
-
Domazet-Loso, T. and Tautz, D. (2008) An ancient evolutionary origin of genes associated with human genetic diseases. Mol. Biol. Evol., 25, 2699-2707.
-
(2008)
Mol. Biol. Evol.
, vol.25
, pp. 2699-2707
-
-
Domazet-Loso, T.1
Tautz, D.2
-
17
-
-
77952449083
-
Phylostratigraphic tracking of cancer genes suggests a link to the emergence of multicellularity in metazoa
-
Domazet-Loso, T. and Tautz, D. (2010) Phylostratigraphic tracking of cancer genes suggests a link to the emergence of multicellularity in metazoa. BMC Biol., 8, 66.
-
(2010)
BMC Biol.
, vol.8
, pp. 66
-
-
Domazet-Loso, T.1
Tautz, D.2
-
18
-
-
84941145210
-
The BioGRID interaction database: 2015 update
-
Chatr-Aryamontri, A., Breitkreutz, B. J., Oughtred, R., Boucher, L., Heinicke, S., Chen, D., Stark, C., Breitkreutz, A., Kolas, N., O'Donnell, L. et al. (2015) The BioGRID interaction database: 2015 update. Nucleic Acids Res., 43, D470-D478.
-
(2015)
Nucleic Acids Res.
, vol.43
, pp. D470-D478
-
-
Chatr-Aryamontri, A.1
Breitkreutz, B.J.2
Oughtred, R.3
Boucher, L.4
Heinicke, S.5
Chen, D.6
Stark, C.7
Breitkreutz, A.8
Kolas, N.9
O'Donnell, L.10
-
19
-
-
84891799734
-
The MIntAct project-IntAct as a common curation platform for 11 molecular interaction databases
-
Orchard, S., Ammari, M., Aranda, B., Breuza, L., Briganti, L., Broackes-Carter, F., Campbell, N. H., Chavali, G., Chen, C., del-Toro, N. et al. (2014) The MIntAct project-IntAct as a common curation platform for 11 molecular interaction databases. Nucleic Acids Res., 42, D358-D363.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. D358-D363
-
-
Orchard, S.1
Ammari, M.2
Aranda, B.3
Breuza, L.4
Briganti, L.5
Broackes-Carter, F.6
Campbell, N.H.7
Chavali, G.8
Chen, C.9
Del-Toro, N.10
-
20
-
-
0347755535
-
The database of interacting proteins: 2004 update
-
Salwinski, L., Miller, C. S., Smith, A. J., Pettit, F. K., Bowie, J. U. and Eisenberg, D. (2004) The Database of Interacting Proteins: 2004 update. Nucleic Acids Res., 32, D449-D451.
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. D449-D451
-
-
Salwinski, L.1
Miller, C.S.2
Smith, A.J.3
Pettit, F.K.4
Bowie, J.U.5
Eisenberg, D.6
-
21
-
-
58149193222
-
Human Protein Reference database-2009 update
-
Keshava Prasad, T. S., Goel, R., Kandasamy, K., Keerthikumar, S., Kumar, S., Mathivanan, S., Telikicherla, D., Raju, R., Shafreen, B., Venugopal, A. et al. (2009) Human Protein Reference database-2009 update. Nucleic Acids Res., 37, D767-D772.
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. D767-D772
-
-
Keshava Prasad, T.S.1
Goel, R.2
Kandasamy, K.3
Keerthikumar, S.4
Kumar, S.5
Mathivanan, S.6
Telikicherla, D.7
Raju, R.8
Shafreen, B.9
Venugopal, A.10
-
22
-
-
75549091794
-
CORUM: The comprehensive resource of mammalian protein complexes-2009
-
Ruepp, A., Waegele, B., Lechner, M., Brauner, B., Dunger-Kaltenbach, I., Fobo, G., Frishman, G., Montrone, C. and Mewes, H. W. (2010) CORUM: the comprehensive resource of mammalian protein complexes-2009. Nucleic Acids Res., 38, D497-D501.
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. D497-D501
-
-
Ruepp, A.1
Waegele, B.2
Lechner, M.3
Brauner, B.4
Dunger-Kaltenbach, I.5
Fobo, G.6
Frishman, G.7
Montrone, C.8
Mewes, H.W.9
-
23
-
-
84871602426
-
Annotating cancer variants and anti-cancer therapeutics in reactome
-
Milacic, M., Haw, R., Rothfels, K., Wu, G., Croft, D., Hermjakob, H., D'Eustachio, P. and Stein, L. (2012) Annotating cancer variants and anti-cancer therapeutics in reactome. Cancers, 4, 1180-1211.
-
(2012)
Cancers
, vol.4
, pp. 1180-1211
-
-
Milacic, M.1
Haw, R.2
Rothfels, K.3
Wu, G.4
Croft, D.5
Hermjakob, H.6
D'Eustachio, P.7
Stein, L.8
-
24
-
-
84891796290
-
MiRTarBase update 2014: An information resource for experimentally validated miRNA-target interactions
-
Hsu, S. D., Tseng, Y. T., Shrestha, S., Lin, Y. L., Khaleel, A., Chou, C. H., Chu, C. F., Huang, H. Y., Lin, C. M., Ho, S. Y. et al. (2014) miRTarBase update 2014: an information resource for experimentally validated miRNA-target interactions. Nucleic Acids Res., 42, D78-D85.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. D78-D85
-
-
Hsu, S.D.1
Tseng, Y.T.2
Shrestha, S.3
Lin, Y.L.4
Khaleel, A.5
Chou, C.H.6
Chu, C.F.7
Huang, H.Y.8
Lin, C.M.9
Ho, S.Y.10
-
25
-
-
58149186499
-
MiRecords: An integrated resource for microRNA-target interactions
-
Xiao, F., Zuo, Z., Cai, G., Kang, S., Gao, X. and Li, T. (2009) miRecords: an integrated resource for microRNA-target interactions. Nucleic Acids Res., 37, D105-D110.
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. D105-D110
-
-
Xiao, F.1
Zuo, Z.2
Cai, G.3
Kang, S.4
Gao, X.5
Li, T.6
-
26
-
-
84929015296
-
Human genomics. The human transcriptome across tissues and individuals
-
Melé, M., Ferreira, P. G., Reverter, F., DeLuca, D. S., Monlong, J., Sammeth, M., Young, T. R., Goldmann, J. M., Pervouchine, D. D., Sullivan, T. J. et al. (2015) Human genomics. The human transcriptome across tissues and individuals. Science, 348, 660-665.
-
(2015)
Science
, vol.348
, pp. 660-665
-
-
Melé, M.1
Ferreira, P.G.2
Reverter, F.3
DeLuca, D.S.4
Monlong, J.5
Sammeth, M.6
Young, T.R.7
Goldmann, J.M.8
Pervouchine, D.D.9
Sullivan, T.J.10
-
27
-
-
84920269464
-
Proteomics. Tissue-based map of the human proteome
-
Uhlén, M., Fagerberg, L., Hallstrom, B. M., Lindskog, C., Oksvold, P., Mardinoglu, A., Sivertsson, A., Kampf, C., Sjostedt, E., Asplund, A. et al. (2015) Proteomics. Tissue-based map of the human proteome. Science, 347, 1260419.
-
(2015)
Science
, vol.347
, pp. 1260419
-
-
Uhlén, M.1
Fagerberg, L.2
Hallstrom, B.M.3
Lindskog, C.4
Oksvold, P.5
Mardinoglu, A.6
Sivertsson, A.7
Kampf, C.8
Sjostedt, E.9
Asplund, A.10
-
28
-
-
84859169877
-
The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity
-
Barretina, J., Caponigro, G., Stransky, N., Venkatesan, K., Margolin, A. A., Kim, S., Wilson, C. J., Lehar, J., Kryukov, G. V., Sonkin, D. et al. (2012) The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity. Nature, 483, 603-607.
-
(2012)
Nature
, vol.483
, pp. 603-607
-
-
Barretina, J.1
Caponigro, G.2
Stransky, N.3
Venkatesan, K.4
Margolin, A.A.5
Kim, S.6
Wilson, C.J.7
Lehar, J.8
Kryukov, G.V.9
Sonkin, D.10
-
29
-
-
84859187259
-
Systematic identification of genomic markers of drug sensitivity in cancer cells
-
Garnett, M. J., Edelman, E. J., Heidorn, S. J., Greenman, C. D., Dastur, A., Lau, K. W., Greninger, P., Thompson, I. R., Luo, X., Soares, J. et al. (2012) Systematic identification of genomic markers of drug sensitivity in cancer cells. Nature, 483, 570-575.
-
(2012)
Nature
, vol.483
, pp. 570-575
-
-
Garnett, M.J.1
Edelman, E.J.2
Heidorn, S.J.3
Greenman, C.D.4
Dastur, A.5
Lau, K.W.6
Greninger, P.7
Thompson, I.R.8
Luo, X.9
Soares, J.10
-
30
-
-
84924407460
-
A comprehensive transcriptional portrait of human cancer cell lines
-
Klijn, C., Durinck, S., Stawiski, E. W., Haverty, P. M., Jiang, Z., Liu, H., Degenhardt, J., Mayba, O., Gnad, F., Liu, J. et al. (2015) A comprehensive transcriptional portrait of human cancer cell lines. Nat. Biotechnol., 33, 306-312.
-
(2015)
Nat. Biotechnol.
, vol.33
, pp. 306-312
-
-
Klijn, C.1
Durinck, S.2
Stawiski, E.W.3
Haverty, P.M.4
Jiang, Z.5
Liu, H.6
Degenhardt, J.7
Mayba, O.8
Gnad, F.9
Liu, J.10
-
31
-
-
84878215865
-
Integrated analysis of recurrent properties of cancer genes to identify novel drivers
-
D'Antonio, M. and Ciccarelli, F. D. (2013) Integrated analysis of recurrent properties of cancer genes to identify novel drivers. Genome Biol., 14, R52.
-
(2013)
Genome Biol.
, vol.14
, pp. R52
-
-
D'Antonio, M.1
Ciccarelli, F.D.2
-
32
-
-
84946060416
-
SMART: Recent updates, new developments and status in 2015
-
Letunic, I., Doerks, T. and Bork, P. (2015) SMART: recent updates, new developments and status in 2015. Nucleic Acids Res., 43, D257-D260.
-
(2015)
Nucleic Acids Res.
, vol.43
, pp. D257-D260
-
-
Letunic, I.1
Doerks, T.2
Bork, P.3
-
33
-
-
84888862866
-
DGIdb: Mining the druggable genome
-
Griffith, M., Griffith, O. L., Coffman, A. C., Weible, J. V., McMichael, J. F., Spies, N. C., Koval, J., Das, I., Callaway, M. B., Eldred, J. M. et al. (2013) DGIdb: mining the druggable genome. Nat. Methods, 10, 1209-1210.
-
(2013)
Nat. Methods
, vol.10
, pp. 1209-1210
-
-
Griffith, M.1
Griffith, O.L.2
Coffman, A.C.3
Weible, J.V.4
McMichael, J.F.5
Spies, N.C.6
Koval, J.7
Das, I.8
Callaway, M.B.9
Eldred, J.M.10
-
34
-
-
84891781052
-
STITCH 4: Integration of protein-chemical interactions with user data
-
Kuhn, M., Szklarczyk, D., Pletscher-Frankild, S., Blicher, T. H., von Mering, C., Jensen, L. J. and Bork, P. (2014) STITCH 4: integration of protein-chemical interactions with user data. Nucleic Acids Res., 42, D401-D407.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. D401-D407
-
-
Kuhn, M.1
Szklarczyk, D.2
Pletscher-Frankild, S.3
Blicher, T.H.4
Von Mering, C.5
Jensen, L.J.6
Bork, P.7
-
35
-
-
84891762026
-
The ChEMBL bioactivity database: An update
-
Bento, A. P., Gaulton, A., Hersey, A., Bellis, L. J., Chambers, J., Davies, M., Kruger, F. A., Light, Y., Mak, L., McGlinchey, S. et al. (2014) The ChEMBL bioactivity database: an update. Nucleic Acids Res., 42, D1083-D1090.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. D1083-D1090
-
-
Bento, A.P.1
Gaulton, A.2
Hersey, A.3
Bellis, L.J.4
Chambers, J.5
Davies, M.6
Kruger, F.A.7
Light, Y.8
Mak, L.9
McGlinchey, S.10
-
36
-
-
84891038218
-
Recessive cancer genes engage in negative genetic interactions with their functional paralogs
-
D'Antonio, M., Guerra, R. F., Cereda, M., Marchesi, S., Montani, F., Nicassio, F., Di Fiore, P. P. and Ciccarelli, F. D. (2013) Recessive cancer genes engage in negative genetic interactions with their functional paralogs. Cell Rep., 5, 1519-1526.
-
(2013)
Cell Rep.
, vol.5
, pp. 1519-1526
-
-
D'Antonio, M.1
Guerra, R.F.2
Cereda, M.3
Marchesi, S.4
Montani, F.5
Nicassio, F.6
Di Fiore, P.P.7
Ciccarelli, F.D.8
-
37
-
-
84905039882
-
Studying tumorigenesis through network evolution and somatic mutational perturbations in the cancer interactome
-
Cheng, F., Jia, P., Wang, Q., Lin, C. C., Li, W. H. and Zhao, Z. (2014) Studying tumorigenesis through network evolution and somatic mutational perturbations in the cancer interactome. Mol. Biol. Evol., 31, 2156-2169.
-
(2014)
Mol. Biol. Evol.
, vol.31
, pp. 2156-2169
-
-
Cheng, F.1
Jia, P.2
Wang, Q.3
Lin, C.C.4
Li, W.H.5
Zhao, Z.6
-
38
-
-
84925276626
-
Clonal dominance with retroviral vector insertions near the ANGPT1 and ANGPT2 genes in a human xenotransplant mouse model
-
Haemmerle, R., Phaltane, R., Rothe, M., Schroder, S., Schambach, A., Moritz, T. and Modlich, U. (2014) Clonal dominance with retroviral vector insertions near the ANGPT1 and ANGPT2 genes in a human xenotransplant mouse model. Mol. Ther. Nucleic Acids, 3, e200.
-
(2014)
Mol. Ther. Nucleic Acids
, vol.3
, pp. e200
-
-
Haemmerle, R.1
Phaltane, R.2
Rothe, M.3
Schroder, S.4
Schambach, A.5
Moritz, T.6
Modlich, U.7
-
39
-
-
84881256734
-
Predicting potential cancer genes by integrating network properties, sequence features and functional annotations
-
Liu, W. and Xie, H. (2013) Predicting potential cancer genes by integrating network properties, sequence features and functional annotations. Sci. China Life Sci., 56, 751-757.
-
(2013)
Sci. China Life Sci.
, vol.56
, pp. 751-757
-
-
Liu, W.1
Xie, H.2
-
40
-
-
84929153265
-
Evaluation and integration of cancer gene classifiers: Identification and ranking of plausible drivers
-
Liu, Y., Tian, F., Hu, Z. and DeLisi, C. (2015) Evaluation and integration of cancer gene classifiers: identification and ranking of plausible drivers. Sci. Rep., 5, 10204.
-
(2015)
Sci. Rep.
, vol.5
, pp. 10204
-
-
Liu, Y.1
Tian, F.2
Hu, Z.3
DeLisi, C.4
-
41
-
-
84925371698
-
Classification of breast cancer subtypes by combining gene expression and DNA methylation data
-
List, M., Hauschild, A. C., Tan, Q., Kruse, T. A., Mollenhauer, J., Baumbach, J. and Batra, R. (2014) Classification of breast cancer subtypes by combining gene expression and DNA methylation data. J. Integr. Bioinform., 11, 236.
-
(2014)
J. Integr. Bioinform.
, vol.11
, pp. 236
-
-
List, M.1
Hauschild, A.C.2
Tan, Q.3
Kruse, T.A.4
Mollenhauer, J.5
Baumbach, J.6
Batra, R.7
-
42
-
-
84878332719
-
Disease co-morbidity and the human Wnt signaling pathway: A network-wise study
-
Nayak, L., Tunga, H. and De, R. K. (2013) Disease co-morbidity and the human Wnt signaling pathway: a network-wise study. OMICS, 17, 318-337.
-
(2013)
OMICS
, vol.17
, pp. 318-337
-
-
Nayak, L.1
Tunga, H.2
De, R.K.3
-
43
-
-
84893581273
-
Efficiency and safety of O (6)-methylguanine DNA methyltransferase (MGMT (P140K))-mediated in vivo selection in a humanized mouse model
-
Phaltane, R., Haemmerle, R., Rothe, M., Modlich, U. and Moritz, T. (2014) Efficiency and safety of O (6)-methylguanine DNA methyltransferase (MGMT (P140K))-mediated in vivo selection in a humanized mouse model. Hum. Gene Ther., 25, 144-155.
-
(2014)
Hum. Gene Ther.
, vol.25
, pp. 144-155
-
-
Phaltane, R.1
Haemmerle, R.2
Rothe, M.3
Modlich, U.4
Moritz, T.5
-
44
-
-
84905247360
-
Single-nucleotide polymorphisms within micrornas sequences and their 3' UTR target sites may regulate gene expression in gastrointestinal tract cancers
-
Saadatian, Z., Masotti, A., Nariman Saleh Fam, Z., Alipoor, B., Bastami, M. and Ghaedi, H. (2014) Single-nucleotide polymorphisms within micrornas sequences and their 3' UTR target sites may regulate gene expression in gastrointestinal tract cancers. Iran Red Crescent Med. J., 16, e16659.
-
(2014)
Iran Red Crescent Med. J.
, vol.16
, pp. e16659
-
-
Saadatian, Z.1
Masotti, A.2
Nariman Saleh Fam, Z.3
Alipoor, B.4
Bastami, M.5
Ghaedi, H.6
-
45
-
-
84925077937
-
Two-layer modular analysis of gene and protein networks in breast cancer
-
Srivastava, A., Kumar, S. and Ramaswamy, R. (2014) Two-layer modular analysis of gene and protein networks in breast cancer. BMC Syst. Biol., 8, 81.
-
(2014)
BMC Syst. Biol.
, vol.8
, pp. 81
-
-
Srivastava, A.1
Kumar, S.2
Ramaswamy, R.3
-
46
-
-
84942235878
-
Bioinformatics analysis of gene expression profiles in hepatocellular carcinoma
-
Shangguan, H., Tan, S. Y. and Zhang, J. R. (2015) Bioinformatics analysis of gene expression profiles in hepatocellular carcinoma. Eur. Rev. Med. Pharmacol. Sci., 19, 2054-2061.
-
(2015)
Eur. Rev. Med. Pharmacol. Sci.
, vol.19
, pp. 2054-2061
-
-
Shangguan, H.1
Tan, S.Y.2
Zhang, J.R.3
-
47
-
-
84922084785
-
Algorithms for network-based identification of differential regulators from transcriptome data: A systematic evaluation
-
Yu, H., Mitra, R., Yang, J., Li, Y. and Zhao, Z. (2014) Algorithms for network-based identification of differential regulators from transcriptome data: a systematic evaluation. Sci. China Life Sci., 57, 1090-1102.
-
(2014)
Sci. China Life Sci.
, vol.57
, pp. 1090-1102
-
-
Yu, H.1
Mitra, R.2
Yang, J.3
Li, Y.4
Zhao, Z.5
-
48
-
-
84934435539
-
Foamy viral vector integration sites in SCID-repopulating cells after MGMTP140K-mediated in vivo selection
-
Olszko, M. E., Adair, J. E., Linde, I., Rae, D. T., Trobridge, P., Hocum, J. D., Rawlings, D. J., Kiem, H. P. and Trobridge, G. D. (2015) Foamy viral vector integration sites in SCID-repopulating cells after MGMTP140K-mediated in vivo selection. Gene Ther., 22, 591-595.
-
(2015)
Gene Ther.
, vol.22
, pp. 591-595
-
-
Olszko, M.E.1
Adair, J.E.2
Linde, I.3
Rae, D.T.4
Trobridge, P.5
Hocum, J.D.6
Rawlings, D.J.7
Kiem, H.P.8
Trobridge, G.D.9
-
49
-
-
84904737228
-
Expanding the genetic basis of copy number variation in familial breast cancer
-
Masson, A. L., Talseth-Palmer, B. A., Evans, T. J., Grice, D. M., Hannan, G. N. and Scott, R. J. (2014) Expanding the genetic basis of copy number variation in familial breast cancer. Hered. Cancer Clin. Pract., 12, 15.
-
(2014)
Hered. Cancer Clin. Pract.
, vol.12
, pp. 15
-
-
Masson, A.L.1
Talseth-Palmer, B.A.2
Evans, T.J.3
Grice, D.M.4
Hannan, G.N.5
Scott, R.J.6
-
50
-
-
84908017877
-
A genomic analysis pipeline and its application to pediatric cancers
-
Zeller, M., Magnan, C. N., Patel, V. R., Rigor, P., Sender, L. and Baldi, P. (2014) A genomic analysis pipeline and its application to pediatric cancers. IEEE/ACM Trans. Comput. Biol. Bioinformatics, 11, 826-839.
-
(2014)
IEEE/ACM Trans. Comput. Biol. Bioinformatics
, vol.11
, pp. 826-839
-
-
Zeller, M.1
Magnan, C.N.2
Patel, V.R.3
Rigor, P.4
Sender, L.5
Baldi, P.6
-
51
-
-
84928658738
-
DOSE: An R/Bioconductor package for disease ontology semantic and enrichment analysis
-
Yu, G., Wang, L. G., Yan, G. R. and He, Q. Y. (2015) DOSE: an R/Bioconductor package for disease ontology semantic and enrichment analysis. Bioinformatics, 31, 608-609.
-
(2015)
Bioinformatics
, vol.31
, pp. 608-609
-
-
Yu, G.1
Wang, L.G.2
Yan, G.R.3
He, Q.Y.4
-
52
-
-
84923762812
-
A new initiative on precision medicine
-
Collins, F. S. and Varmus, H. (2015) A new initiative on precision medicine. N. Engl. J. Med., 372, 793-795.
-
(2015)
N. Engl. J. Med.
, vol.372
, pp. 793-795
-
-
Collins, F.S.1
Varmus, H.2
-
53
-
-
84892765883
-
Genome-scale CRISPR-Cas9 knockout screening in human cells
-
Shalem, O., Sanjana, N. E., Hartenian, E., Shi, X., Scott, D. A., Mikkelsen, T. S., Heckl, D., Ebert, B. L., Root, D. E., Doench, J. G. et al. (2014) Genome-scale CRISPR-Cas9 knockout screening in human cells. Science, 343, 84-87.
-
(2014)
Science
, vol.343
, pp. 84-87
-
-
Shalem, O.1
Sanjana, N.E.2
Hartenian, E.3
Shi, X.4
Scott, D.A.5
Mikkelsen, T.S.6
Heckl, D.7
Ebert, B.L.8
Root, D.E.9
Doench, J.G.10
-
54
-
-
84908352138
-
Genome-scale CRISPR-mediated control of gene repression and activation
-
Gilbert, L. A., Horlbeck, M. A., Adamson, B., Villalta, J. E., Chen, Y., Whitehead, E. H., Guimaraes, C., Panning, B., Ploegh, H. L., Bassik, M. C. et al. (2014) Genome-scale CRISPR-mediated control of gene repression and activation. Cell, 159, 647-661.
-
(2014)
Cell
, vol.159
, pp. 647-661
-
-
Gilbert, L.A.1
Horlbeck, M.A.2
Adamson, B.3
Villalta, J.E.4
Chen, Y.5
Whitehead, E.H.6
Guimaraes, C.7
Panning, B.8
Ploegh, H.L.9
Bassik, M.C.10
-
55
-
-
84892749369
-
Genetic screens in human cells using the CRISPR-Cas9 system
-
Wang, T., Wei, J. J., Sabatini, D. M. and Lander, E. S. (2014) Genetic screens in human cells using the CRISPR-Cas9 system. Science, 343, 80-84.
-
(2014)
Science
, vol.343
, pp. 80-84
-
-
Wang, T.1
Wei, J.J.2
Sabatini, D.M.3
Lander, E.S.4
-
56
-
-
84887010498
-
Genome engineering using the CRISPR-Cas9 system
-
Ran, F. A., Hsu, P. D., Wright, J., Agarwala, V., Scott, D. A. and Zhang, F. (2013) Genome engineering using the CRISPR-Cas9 system. Nat. Protoc., 8, 2281-2308.
-
(2013)
Nat. Protoc.
, vol.8
, pp. 2281-2308
-
-
Ran, F.A.1
Hsu, P.D.2
Wright, J.3
Agarwala, V.4
Scott, D.A.5
Zhang, F.6
-
57
-
-
84923785114
-
Cancer. TERT promoter mutations and telomerase reactivation in urothelial cancer
-
Borah, S., Xi, L., Zaug, A. J., Powell, N. M., Dancik, G. M., Cohen, S. B., Costello, J. C., Theodorescu, D. and Cech, T. R. (2015) Cancer. TERT promoter mutations and telomerase reactivation in urothelial cancer. Science, 347, 1006-1010.
-
(2015)
Science
, vol.347
, pp. 1006-1010
-
-
Borah, S.1
Xi, L.2
Zaug, A.J.3
Powell, N.M.4
Dancik, G.M.5
Cohen, S.B.6
Costello, J.C.7
Theodorescu, D.8
Cech, T.R.9
-
58
-
-
84884524540
-
Frequency of TERT promoter mutations in human cancers
-
Vinagre, J., Almeida, A., Populo, H., Batista, R., Lyra, J., Pinto, V., Coelho, R., Celestino, R., Prazeres, H., Lima, L. et al. (2013) Frequency of TERT promoter mutations in human cancers. Nat. Commun., 4, 2185.
-
(2013)
Nat. Commun.
, vol.4
, pp. 2185
-
-
Vinagre, J.1
Almeida, A.2
Populo, H.3
Batista, R.4
Lyra, J.5
Pinto, V.6
Coelho, R.7
Celestino, R.8
Prazeres, H.9
Lima, L.10
-
59
-
-
84964240053
-
Biological and therapeutic impact of intratumor heterogeneity in cancer evolution
-
McGranahan, N. and Swanton, C. (2015) Biological and therapeutic impact of intratumor heterogeneity in cancer evolution. Cancer Cell, 27, 15-26.
-
(2015)
Cancer Cell
, vol.27
, pp. 15-26
-
-
McGranahan, N.1
Swanton, C.2
|