-
1
-
-
77956873295
-
Disease-associated mutations that alter the RNA structural ensemble
-
Halvorsen, M., Martin, J. S., Broadaway, S. and Laederach, A. (2010) Disease-associated mutations that alter the RNA structural ensemble. PLoS Genet., 6, e1001074.
-
(2010)
PLoS Genet.
, vol.6
, pp. e1001074
-
-
Halvorsen, M.1
Martin, J.S.2
Broadaway, S.3
Laederach, A.4
-
2
-
-
84883588956
-
The RNAsnp web server: Predicting SNP effects on local RNA secondary structure
-
Sabarinathan, R., Tafer, H., Seemann, S. E., Hofacker, I. L., Stadler, P. F. and Gorodkin, J. (2013) The RNAsnp web server: predicting SNP effects on local RNA secondary structure. Nucleic Acids Res., 41, W475-W479.
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. W475-W479
-
-
Sabarinathan, R.1
Tafer, H.2
Seemann, S.E.3
Hofacker, I.L.4
Stadler, P.F.5
Gorodkin, J.6
-
3
-
-
84936803648
-
Detecting riboSNitches with RNA folding algorithms: A genome-wide benchmark
-
Corley, M., Solem, A., Qu, K., Chang, H. Y. and Laederach, A. (2015) Detecting riboSNitches with RNA folding algorithms: a genome-wide benchmark. Nucleic Acids Res., 43, 1859-1868.
-
(2015)
Nucleic Acids Res.
, vol.43
, pp. 1859-1868
-
-
Corley, M.1
Solem, A.2
Qu, K.3
Chang, H.Y.4
Laederach, A.5
-
4
-
-
84897410906
-
Transcriptome-wide analysis of UTRs in Non-small cell lung cancer reveals cancer-related genes with SNV-induced changes on RNA secondary structure and miRNA target sites
-
Sabarinathan, R., Wenzel, A., Novotny, P., Tang, X. J., Kalari, K. R. and Gorodkin, J. (2014) Transcriptome-wide analysis of UTRs in Non-small cell lung cancer reveals cancer-related genes with SNV-induced changes on RNA secondary structure and miRNA target sites. PLoS One, 9, e82699.
-
(2014)
PLoS One
, vol.9
, pp. e82699
-
-
Sabarinathan, R.1
Wenzel, A.2
Novotny, P.3
Tang, X.J.4
Kalari, K.R.5
Gorodkin, J.6
-
5
-
-
0043122919
-
SIFT: Predicting amino acid changes that affect protein function
-
Ng, P. C. and Henikoff, S. (2003) SIFT: predicting amino acid changes that affect protein function. Nucleic Acids Res., 31, 3812-3814.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 3812-3814
-
-
Ng, P.C.1
Henikoff, S.2
-
6
-
-
77951640946
-
A method and server for predicting damaging missense mutations
-
Adzhubei, I. A., Schmidt, S., Peshkin, L., Ramensky, V. E., Gerasimova, A., Bork, P., Kondrashov, A. S. and Sunyaev, S. R. (2010) A method and server for predicting damaging missense mutations. Nat. Methods, 7, 248-249.
-
(2010)
Nat. Methods
, vol.7
, pp. 248-249
-
-
Adzhubei, I.A.1
Schmidt, S.2
Peshkin, L.3
Ramensky, V.E.4
Gerasimova, A.5
Bork, P.6
Kondrashov, A.S.7
Sunyaev, S.R.8
-
7
-
-
84875198920
-
Transcriptional regulation and its misregulation in disease
-
Lee, T. I. and Young, R. A. (2013) Transcriptional regulation and its misregulation in disease. Cell, 152, 1237-1251.
-
(2013)
Cell
, vol.152
, pp. 1237-1251
-
-
Lee, T.I.1
Young, R.A.2
-
8
-
-
84865712382
-
Annotation of functional variation in personal genomes using RegulomeDB
-
Boyle, A. P., Hong, E. L., Hariharan, M., Cheng, Y., Schaub, M. A., Kasowski, M., Karczewski, K. J., Park, J., Hitz, B. C., Weng, S. et al. (2012) Annotation of functional variation in personal genomes using RegulomeDB. Genome Res., 22, 1790-1797.
-
(2012)
Genome Res.
, vol.22
, pp. 1790-1797
-
-
Boyle, A.P.1
Hong, E.L.2
Hariharan, M.3
Cheng, Y.4
Schaub, M.A.5
Kasowski, M.6
Karczewski, K.J.7
Park, J.8
Hitz, B.C.9
Weng, S.10
-
9
-
-
34250735674
-
RNA regulons: Coordination of post-transcriptional events
-
Keene, J. D. (2007) RNA regulons: coordination of post-transcriptional events. Nat. Rev. Genet., 8, 533-543.
-
(2007)
Nat. Rev. Genet.
, vol.8
, pp. 533-543
-
-
Keene, J.D.1
-
10
-
-
84901033525
-
Principles and Properties of Eukaryotic mRNPs
-
Mitchell, S. F. and Parker, R. (2014) Principles and Properties of Eukaryotic mRNPs. Mol. Cell, 54, 547-558.
-
(2014)
Mol. Cell
, vol.54
, pp. 547-558
-
-
Mitchell, S.F.1
Parker, R.2
-
11
-
-
34249316905
-
RNA-binding proteins: Modular design for efficient function
-
Lunde, B. M., Moore, C. and Varani, G. (2007) RNA-binding proteins: modular design for efficient function. Nat. Rev. Mol. Cell Biol., 8, 479-490.
-
(2007)
Nat. Rev. Mol. Cell Biol.
, vol.8
, pp. 479-490
-
-
Lunde, B.M.1
Moore, C.2
Varani, G.3
-
12
-
-
84925010163
-
Regulation of Pluripotency by RNA Binding Proteins
-
Ye, J. and Blelloch, R. (2014) Regulation of Pluripotency by RNA Binding Proteins. Cell Stem Cell, 15, 271-280.
-
(2014)
Cell Stem Cell
, vol.15
, pp. 271-280
-
-
Ye, J.1
Blelloch, R.2
-
13
-
-
84907264121
-
The RBPome: Where the brains meet the brawn
-
Attar, N. (2014) The RBPome: where the brains meet the brawn. Genome Biol., 15, 402.
-
(2014)
Genome Biol.
, vol.15
, pp. 402
-
-
Attar, N.1
-
14
-
-
84855916545
-
Protein-RNA interactions: New genomic technologies and perspectives
-
Konig, J., Zarnack, K., Luscombe, N. M. and Ule, J. (2012) Protein-RNA interactions: new genomic technologies and perspectives. Nat. Rev. Genet., 13, 77-83.
-
(2012)
Nat. Rev. Genet.
, vol.13
, pp. 77-83
-
-
Konig, J.1
Zarnack, K.2
Luscombe, N.M.3
Ule, J.4
-
15
-
-
84862494264
-
Identification of RNA-protein interaction networks using PAR-CLIP
-
Ascano, M., Hafner, M., Cekan, P., Gerstberger, S. and Tuschl, T. (2012) Identification of RNA-protein interaction networks using PAR-CLIP. Wires RNA, 3, 159-177.
-
(2012)
Wires RNA
, vol.3
, pp. 159-177
-
-
Ascano, M.1
Hafner, M.2
Cekan, P.3
Gerstberger, S.4
Tuschl, T.5
-
16
-
-
56549105330
-
HITS-CLIP yields genome-wide insights into brain alternative RNA processing
-
Licatalosi, D. D., Mele, A., Fak, J. J., Ule, J., Kayikci, M., Chi, S. W., Clark, T. A., Schweitzer, A. C., Blume, J. E., Wang, X. N. et al. (2008) HITS-CLIP yields genome-wide insights into brain alternative RNA processing. Nature, 456, U464-U422.
-
(2008)
Nature
, vol.456
, pp. U422-U464
-
-
Licatalosi, D.D.1
Mele, A.2
Fak, J.J.3
Ule, J.4
Kayikci, M.5
Chi, S.W.6
Clark, T.A.7
Schweitzer, A.C.8
Blume, J.E.9
Wang, X.N.10
-
17
-
-
77950920903
-
Transcriptome-wide identification of RNA-binding protein and MicroRNA target sites by PAR-CLIP
-
Hafner, M., Landthaler, M., Burger, L., Khorshid, M., Hausser, J., Berninger, P., Rothballer, A., Ascano, M., Jungkamp, A. C., Munschauer, M. et al. (2010) Transcriptome-wide identification of RNA-binding protein and MicroRNA target sites by PAR-CLIP. Cell, 141, 129-141.
-
(2010)
Cell
, vol.141
, pp. 129-141
-
-
Hafner, M.1
Landthaler, M.2
Burger, L.3
Khorshid, M.4
Hausser, J.5
Berninger, P.6
Rothballer, A.7
Ascano, M.8
Jungkamp, A.C.9
Munschauer, M.10
-
18
-
-
77954387023
-
ICLIP reveals the function of hnRNP particles in splicing at individual nucleotide resolution
-
Konig, J., Zarnack, K., Rot, G., Curk, T., Kayikci, M., Zupan, B., Turner, D. J., Luscombe, N. M. and Ule, J. (2010) iCLIP reveals the function of hnRNP particles in splicing at individual nucleotide resolution. Nat. Struct. Mol. Biol., 17, U909-U166.
-
(2010)
Nat. Struct. Mol. Biol.
, vol.17
, pp. U909-U1166
-
-
Konig, J.1
Zarnack, K.2
Rot, G.3
Curk, T.4
Kayikci, M.5
Zupan, B.6
Turner, D.J.7
Luscombe, N.M.8
Ule, J.9
-
19
-
-
84893358533
-
Landscape and variation of RNA secondary structure across the human transcriptome
-
Wan, Y., Qu, K., Zhang, Q. C., Flynn, R. A., Manor, O., Ouyang, Z. Q., Zhang, J. J., Spitale, R. C., Snyder, M. P., Segal, E. et al. (2014) Landscape and variation of RNA secondary structure across the human transcriptome. Nature, 505, 706-715.
-
(2014)
Nature
, vol.505
, pp. 706-715
-
-
Wan, Y.1
Qu, K.2
Zhang, Q.C.3
Flynn, R.A.4
Manor, O.5
Ouyang, Z.Q.6
Zhang, J.J.7
Spitale, R.C.8
Snyder, M.P.9
Segal, E.10
-
20
-
-
84892636681
-
GraphProt: Modeling binding preferences of RNA-binding proteins
-
Maticzka, D., Lange, S. J., Costa, F. and Backofen, R. (2014) GraphProt: modeling binding preferences of RNA-binding proteins. Genome Biol., 15, 17-34.
-
(2014)
Genome Biol.
, vol.15
, pp. 17-34
-
-
Maticzka, D.1
Lange, S.J.2
Costa, F.3
Backofen, R.4
-
21
-
-
84892606476
-
CapR: Revealing structural specificities of RNA-binding protein target recognition using CLIP-seq data
-
Fukunaga, T., Ozaki, H., Terai, G., Asai, K., Iwasaki, W. and Kiryu, H. (2014) CapR: revealing structural specificities of RNA-binding protein target recognition using CLIP-seq data. Genome Biol., 15, 16-30.
-
(2014)
Genome Biol.
, vol.15
, pp. 16-30
-
-
Fukunaga, T.1
Ozaki, H.2
Terai, G.3
Asai, K.4
Iwasaki, W.5
Kiryu, H.6
-
22
-
-
84876806808
-
RNA-binding proteins in Mendelian disease
-
Castello, A., Fischer, B., Hentze, M. W. and Preiss, T. (2013) RNA-binding proteins in Mendelian disease. Trends Genet., 29, 318-327.
-
(2013)
Trends Genet.
, vol.29
, pp. 318-327
-
-
Castello, A.1
Fischer, B.2
Hentze, M.W.3
Preiss, T.4
-
23
-
-
62149141328
-
Rethinking ALS: The FUS about TDP-43
-
Lagier-Tourenne, C. and Cleveland, D. W. (2009) Rethinking ALS: The FUS about TDP-43. Cell, 136, 1001-1004.
-
(2009)
Cell
, vol.136
, pp. 1001-1004
-
-
Lagier-Tourenne, C.1
Cleveland, D.W.2
-
24
-
-
84886865162
-
Deciphering the functions and regulation of brain-enriched A-to-I RNA editing
-
Li, J. B. and Church, G. M. (2013) Deciphering the functions and regulation of brain-enriched A-to-I RNA editing. Nat. Neurosci., 16, 1518-1522.
-
(2013)
Nat. Neurosci.
, vol.16
, pp. 1518-1522
-
-
Li, J.B.1
Church, G.M.2
-
25
-
-
84891818924
-
StarBase v2.0: Decoding miRNA-ceRNA, miRNA-ncRNA and protein-RNA interaction networks from large-scale CLIP-Seq data
-
Li, J. H., Liu, S., Zhou, H., Qu, L. H. and Yang, J. H. (2014) starBase v2.0: decoding miRNA-ceRNA, miRNA-ncRNA and protein-RNA interaction networks from large-scale CLIP-Seq data. Nucleic Acids Res., 42, D92-D97.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. D92-D97
-
-
Li, J.H.1
Liu, S.2
Zhou, H.3
Qu, L.H.4
Yang, J.H.5
-
26
-
-
84924328345
-
CLIPdb: A CLIP-seq database for protein-RNA interactions
-
58
-
Yang, Y. C., Di, C., Hu, B., Zhou, M., Liu, Y., Song, N., Li, Y., Umetsu, J. and Lu, Z. J. (2015) CLIPdb: a CLIP-seq database for protein-RNA interactions. BMC Genomics, 16, 51, 58.
-
(2015)
BMC Genomics
, vol.16
, pp. 51
-
-
Yang, Y.C.1
Di, C.2
Hu, B.3
Zhou, M.4
Liu, Y.5
Song, N.6
Li, Y.7
Umetsu, J.8
Lu, Z.J.9
-
27
-
-
84874271270
-
NCBI GEO: Archive for functional genomics data sets-update
-
Barrett, T., Wilhite, S. E., Ledoux, P., Evangelista, C., Kim, I. F., Tomashevsky, M., Marshall, K. A., Phillippy, K. H., Sherman, P. M., Holko, M. et al. (2013) NCBI GEO: archive for functional genomics data sets-update. Nucleic Acids Res., 41, D991-D995.
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. D991-D995
-
-
Barrett, T.1
Wilhite, S.E.2
Ledoux, P.3
Evangelista, C.4
Kim, I.F.5
Tomashevsky, M.6
Marshall, K.A.7
Phillippy, K.H.8
Sherman, P.M.9
Holko, M.10
-
28
-
-
45149108420
-
Mapping the genetic architecture of gene expression in human liver
-
Schadt, E. E., Molony, C., Chudin, E., Hao, K., Yang, X., Lum, P. Y., Kasarskis, A., Zhang, B., Wang, S., Suver, C. et al. (2008) Mapping the genetic architecture of gene expression in human liver. PLoS Biol., 6, 1020-1032.
-
(2008)
PLoS Biol.
, vol.6
, pp. 1020-1032
-
-
Schadt, E.E.1
Molony, C.2
Chudin, E.3
Hao, K.4
Yang, X.5
Lum, P.Y.6
Kasarskis, A.7
Zhang, B.8
Wang, S.9
Suver, C.10
-
29
-
-
36549053104
-
A survey of genetic human cortical gene expression
-
Myers, A. J., Gibbs, J. R., Webster, J., Rohrer, K., Zhao, A., Marlowe, L., Kaleem, M., Leung, D., Bryden, L., Nath, P. et al. (2007) A survey of genetic human cortical gene expression. Nat. Genet., 39, 1494-1499.
-
(2007)
Nat. Genet.
, vol.39
, pp. 1494-1499
-
-
Myers, A.J.1
Gibbs, J.R.2
Webster, J.3
Rohrer, K.4
Zhao, A.5
Marlowe, L.6
Kaleem, M.7
Leung, D.8
Bryden, L.9
Nath, P.10
-
30
-
-
84976876871
-
Population genomics of human gene expression
-
Dermitzakis, E. T. (2008) Population genomics of human gene expression. FEBS J., 275, 9-9.
-
(2008)
FEBS J.
, vol.275
, pp. 9
-
-
Dermitzakis, E.T.1
-
31
-
-
55449112450
-
High-resolution mapping of expression-QTLs yields insight into human gene regulation
-
Veyrieras, J. B., Kudaravalli, S., Kim, S. Y., Dermitzakis, E. T., Gilad, Y., Stephens, M. and Pritchard, J. K. (2008) High-resolution mapping of expression-QTLs yields insight into human gene regulation. PLoS Genet., 4, e1000214.
-
(2008)
PLoS Genet.
, vol.4
, pp. e1000214
-
-
Veyrieras, J.B.1
Kudaravalli, S.2
Kim, S.Y.3
Dermitzakis, E.T.4
Gilad, Y.5
Stephens, M.6
Pritchard, J.K.7
-
32
-
-
77950460661
-
Understanding mechanisms underlying human gene expression variation with RNA sequencing
-
Pickrell, J. K., Marioni, J. C., Pai, A. A., Degner, J. F., Engelhardt, B. E., Nkadori, E., Veyrieras, J. B., Stephens, M., Gilad, Y. and Pritchard, J. K. (2010) Understanding mechanisms underlying human gene expression variation with RNA sequencing. Nature, 464, 768-772.
-
(2010)
Nature
, vol.464
, pp. 768-772
-
-
Pickrell, J.K.1
Marioni, J.C.2
Pai, A.A.3
Degner, J.F.4
Engelhardt, B.E.5
Nkadori, E.6
Veyrieras, J.B.7
Stephens, M.8
Gilad, Y.9
Pritchard, J.K.10
-
33
-
-
77950458649
-
Transcriptome genetics using second generation sequencing in a Caucasian population
-
Montgomery, S. B., Sammeth, M., Gutierrez-Arcelus, M., Lach, R. P., Ingle, C., Nisbett, J., Guigo, R. and Dermitzakis, E. T. (2010) Transcriptome genetics using second generation sequencing in a Caucasian population. Nature, 464, U773-U151.
-
(2010)
Nature
, vol.464
, pp. U773-U1151
-
-
Montgomery, S.B.1
Sammeth, M.2
Gutierrez-Arcelus, M.3
Lach, R.P.4
Ingle, C.5
Nisbett, J.6
Guigo, R.7
Dermitzakis, E.T.8
-
34
-
-
77956637896
-
Genetics and beyond-The transcriptome of human monocytes and disease susceptibility
-
Zeller, T., Wild, P., Szymczak, S., Rotival, M., Schillert, A., Castagne, R., Maouche, S., Germain, M., Lackner, K., Rossmann, H. et al. (2010) Genetics and beyond-the transcriptome of human monocytes and disease susceptibility. PLoS One, 5, e10693.
-
(2010)
PLoS One
, vol.5
, pp. e10693
-
-
Zeller, T.1
Wild, P.2
Szymczak, S.3
Rotival, M.4
Schillert, A.5
Castagne, R.6
Maouche, S.7
Germain, M.8
Lackner, K.9
Rossmann, H.10
-
35
-
-
84856573472
-
SeeQTL: A searchable database for human eQTLs
-
Xia, K., Shabalin, A. A., Huang, S. P., Madar, V., Zhou, Y. H., Wang, W., Zou, F., Sun, W., Sullivan, P. F. and Wright, F. A. (2012) seeQTL: a searchable database for human eQTLs. Bioinformatics, 28, 451-452.
-
(2012)
Bioinformatics
, vol.28
, pp. 451-452
-
-
Xia, K.1
Shabalin, A.A.2
Huang, S.P.3
Madar, V.4
Zhou, Y.H.5
Wang, W.6
Zou, F.7
Sun, W.8
Sullivan, P.F.9
Wright, F.A.10
-
36
-
-
75249089572
-
SCAN: SNP and copy number annotation
-
Gamazon, E. R., Zhang, W., Konkashbaev, A., Duan, S. W., Kistner, E. O., Nicolae, D. L., Dolan, M. E. and Cox, N. J. (2010) SCAN: SNP and copy number annotation. Bioinformatics, 26, 259-262.
-
(2010)
Bioinformatics
, vol.26
, pp. 259-262
-
-
Gamazon, E.R.1
Zhang, W.2
Konkashbaev, A.3
Duan, S.W.4
Kistner, E.O.5
Nicolae, D.L.6
Dolan, M.E.7
Cox, N.J.8
-
37
-
-
84878682420
-
The Genotype-Tissue Expression (GTEx) project
-
Lonsdale, J., Thomas, J., Salvatore, M., Phillips, R., Lo, E., Shad, S., Hasz, R., Walters, G., Garcia, F., Young, N. et al. (2013) The Genotype-Tissue Expression (GTEx) project. Nat. Genet., 45, 580-585.
-
(2013)
Nat. Genet.
, vol.45
, pp. 580-585
-
-
Lonsdale, J.1
Thomas, J.2
Salvatore, M.3
Phillips, R.4
Lo, E.5
Shad, S.6
Hasz, R.7
Walters, G.8
Garcia, F.9
Young, N.10
-
38
-
-
84891790401
-
The NHGRI GWAS Catalog, a curated resource of SNP-trait associations
-
Welter, D., MacArthur, J., Morales, J., Burdett, T., Hall, P., Junkins, H., Klemm, A., Flicek, P., Manolio, T., Hindorff, L. et al. (2014) The NHGRI GWAS Catalog, a curated resource of SNP-trait associations. Nucleic Acids Res., 42, D1001-D1006.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. D1001-D1006
-
-
Welter, D.1
MacArthur, J.2
Morales, J.3
Burdett, T.4
Hall, P.5
Junkins, H.6
Klemm, A.7
Flicek, P.8
Manolio, T.9
Hindorff, L.10
-
39
-
-
84946040120
-
COSMIC: Exploring the world's knowledge of somatic mutations in human cancer
-
Forbes, S. A., Beare, D., Gunasekaran, P., Leung, K., Bindal, N., Boutselakis, H., Ding, M., Bamford, S., Cole, C., Ward, S. et al. (2015) COSMIC: exploring the world's knowledge of somatic mutations in human cancer. Nucleic Acids Res., 43, D805-D811.
-
(2015)
Nucleic Acids Res.
, vol.43
, pp. D805-D811
-
-
Forbes, S.A.1
Beare, D.2
Gunasekaran, P.3
Leung, K.4
Bindal, N.5
Boutselakis, H.6
Ding, M.7
Bamford, S.8
Cole, C.9
Ward, S.10
-
40
-
-
84891809093
-
ClinVar: Public archive of relationships among sequence variation and human phenotype
-
Landrum, M. J., Lee, J. M., Riley, G. R., Jang, W., Rubinstein, W. S., Church, D. M. and Maglott, D. R. (2014) ClinVar: public archive of relationships among sequence variation and human phenotype. Nucleic Acids Res., 42, D980-D985.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. D980-D985
-
-
Landrum, M.J.1
Lee, J.M.2
Riley, G.R.3
Jang, W.4
Rubinstein, W.S.5
Church, D.M.6
Maglott, D.R.7
-
41
-
-
84861969926
-
Insights into RNA biology from an atlas of mammalian mRNA-binding proteins
-
Castello, A., Fischer, B., Eichelbaum, K., Horos, R., Beckmann, B. M., Strein, C., Davey, N. E., Humphreys, D. T., Preiss, T., Steinmetz, L. M. et al. (2012) Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. Cell, 149, 1393-1406.
-
(2012)
Cell
, vol.149
, pp. 1393-1406
-
-
Castello, A.1
Fischer, B.2
Eichelbaum, K.3
Horos, R.4
Beckmann, B.M.5
Strein, C.6
Davey, N.E.7
Humphreys, D.T.8
Preiss, T.9
Steinmetz, L.M.10
-
42
-
-
84880427394
-
A compendium of RNA-binding motifs for decoding gene regulation
-
Ray, D., Kazan, H., Cook, K. B., Weirauch, M. T., Najafabadi, H. S., Li, X., Gueroussov, S., Albu, M., Zheng, H., Yang, A. et al. (2013) A compendium of RNA-binding motifs for decoding gene regulation. Nature, 499, 172-177.
-
(2013)
Nature
, vol.499
, pp. 172-177
-
-
Ray, D.1
Kazan, H.2
Cook, K.B.3
Weirauch, M.T.4
Najafabadi, H.S.5
Li, X.6
Gueroussov, S.7
Albu, M.8
Zheng, H.9
Yang, A.10
-
43
-
-
78651308986
-
RBPDB: A database of RNA-binding specificities
-
Cook, K. B., Kazan, H., Zuberi, K., Morris, Q. and Hughes, T. R. (2011) RBPDB: a database of RNA-binding specificities. Nucleic Acids Res., 39, D301-D308.
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. D301-D308
-
-
Cook, K.B.1
Kazan, H.2
Zuberi, K.3
Morris, Q.4
Hughes, T.R.5
-
44
-
-
84855180017
-
AURA: Atlas of UTR regulatory activity
-
Dassi, E., Malossini, A., Re, A., Mazza, T., Tebaldi, T., Caputi, L. and Quattrone, A. (2012) AURA: Atlas of UTR Regulatory Activity. Bioinformatics, 28, 142-144.
-
(2012)
Bioinformatics
, vol.28
, pp. 142-144
-
-
Dassi, E.1
Malossini, A.2
Re, A.3
Mazza, T.4
Tebaldi, T.5
Caputi, L.6
Quattrone, A.7
-
45
-
-
67849122320
-
MEME SUITE: Tools for motif discovery and searching
-
Bailey, T. L., Boden, M., Buske, F. A., Frith, M., Grant, C. E., Clementi, L., Ren, J., Li, W. W. and Noble, W. S. (2009) MEME SUITE: tools for motif discovery and searching. Nucleic Acids Res., 37, W202-W208.
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. W202-W208
-
-
Bailey, T.L.1
Boden, M.2
Buske, F.A.3
Frith, M.4
Grant, C.E.5
Clementi, L.6
Ren, J.7
Li, W.W.8
Noble, W.S.9
-
46
-
-
48449095385
-
The Vienna RNA websuite
-
Gruber, A. R., Lorenz, R., Bernhart, S. H., Neuboock, R. and Hofacker, I. L. (2008) The Vienna RNA Websuite. Nucleic Acids Res., 36, W70-W74.
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. W70-W74
-
-
Gruber, A.R.1
Lorenz, R.2
Bernhart, S.H.3
Neuboock, R.4
Hofacker, I.L.5
-
47
-
-
60149095444
-
Most mammalian mRNAs are conserved targets of microRNAs
-
Friedman, R. C., Farh, K. K. H., Burge, C. B. and Bartel, D. P. (2009) Most mammalian mRNAs are conserved targets of microRNAs. Genome Res., 19, 92-105.
-
(2009)
Genome Res.
, vol.19
, pp. 92-105
-
-
Friedman, R.C.1
Farh, K.K.H.2
Burge, C.B.3
Bartel, D.P.4
-
48
-
-
38549124383
-
The microRNA.org resource: Targets and expression
-
Betel, D., Wilson, M., Gabow, A., Marks, D. S. and Sander, C. (2008) The microRNA.org resource: targets and expression. Nucleic Acids Res., 36, D149-D153.
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. D149-D153
-
-
Betel, D.1
Wilson, M.2
Gabow, A.3
Marks, D.S.4
Sander, C.5
-
49
-
-
77956331627
-
Integrating common and rare genetic variation in diverse human populations
-
Altshuler, D. M., Gibbs, R. A., Peltonen, L., Dermitzakis, E., Schaffner, S. F., Yu, F. L., Bonnen, P. E., de Bakker, P. I. W., Deloukas, P., Gabriel, S. B. et al. (2010) Integrating common and rare genetic variation in diverse human populations. Nature, 467, 52-58.
-
(2010)
Nature
, vol.467
, pp. 52-58
-
-
Altshuler, D.M.1
Gibbs, R.A.2
Peltonen, L.3
Dermitzakis, E.4
Schaffner, S.F.5
Yu, F.L.6
Bonnen, P.E.7
De Bakker, P.I.W.8
Deloukas, P.9
Gabriel, S.B.10
-
50
-
-
84975795680
-
An integrated map of genetic variation from 1, 092 human genomes
-
Altshuler, D. M., Durbin, R. M., Abecasis, G. R., Bentley, D. R., Chakravarti, A., Clark, A. G., Donnelly, P., Eichler, E. E., Flicek, P., Gabriel, S. B. et al. (2012) An integrated map of genetic variation from 1, 092 human genomes. Nature, 491, 56-65.
-
(2012)
Nature
, vol.491
, pp. 56-65
-
-
Altshuler, D.M.1
Durbin, R.M.2
Abecasis, G.R.3
Bentley, D.R.4
Chakravarti, A.5
Clark, A.G.6
Donnelly, P.7
Eichler, E.E.8
Flicek, P.9
Gabriel, S.B.10
-
51
-
-
34548292504
-
PLINK: A tool set for whole-genome association and population-based linkage analyses
-
Purcell, S., Neale, B., Todd-Brown, K., Thomas, L., Ferreira, M. A. R., Bender, D., Maller, J., Sklar, P., de Bakker, P. I. W., Daly, M. J. et al. (2007) PLINK: A tool set for whole-genome association and population-based linkage analyses. Am. J. Hum. Genet., 81, 559-575.
-
(2007)
Am. J. Hum. Genet.
, vol.81
, pp. 559-575
-
-
Purcell, S.1
Neale, B.2
Todd-Brown, K.3
Thomas, L.4
Ferreira, M.A.R.5
Bender, D.6
Maller, J.7
Sklar, P.8
De Bakker, P.I.W.9
Daly, M.J.10
-
52
-
-
84861997955
-
The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts
-
Baltz, A. G., Munschauer, M., Schwanhausser, B., Vasile, A., Murakawa, Y., Schueler, M., Youngs, N., Penfold-Brown, D., Drew, K., Milek, M. et al. (2012) The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts. Mol. Cell, 46, 674-690.
-
(2012)
Mol. Cell
, vol.46
, pp. 674-690
-
-
Baltz, A.G.1
Munschauer, M.2
Schwanhausser, B.3
Vasile, A.4
Murakawa, Y.5
Schueler, M.6
Youngs, N.7
Penfold-Brown, D.8
Drew, K.9
Milek, M.10
-
53
-
-
80053385333
-
Genome-wide association study in individuals of South Asian ancestry identifies six new type 2 diabetes susceptibility loci
-
Kooner, J. S., Saleheen, D., Sim, X., Sehmi, J., Zhang, W. H., Frossard, P., Been, L. F., Chia, K. S., Dimas, A. S., Hassanali, N. et al. (2011) Genome-wide association study in individuals of South Asian ancestry identifies six new type 2 diabetes susceptibility loci. Nat. Genet., 43, U984-U994.
-
(2011)
Nat. Genet.
, vol.43
, pp. U984-U994
-
-
Kooner, J.S.1
Saleheen, D.2
Sim, X.3
Sehmi, J.4
Zhang, W.H.5
Frossard, P.6
Been, L.F.7
Chia, K.S.8
Dimas, A.S.9
Hassanali, N.10
-
54
-
-
84900022532
-
Genetics of type 2 diabetes: Insights into the pathogenesis and its clinical application
-
Sun, X., Yu, W. H. and Hu, C. (2014) Genetics of Type 2 Diabetes: Insights into the Pathogenesis and Its Clinical Application. Biomed. Res. Int., 2014, 926713-926727.
-
(2014)
Biomed. Res. Int.
, vol.2014
, pp. 926713-926727
-
-
Sun, X.1
Yu, W.H.2
Hu, C.3
-
55
-
-
84885018609
-
Systematic identification of trans eQTLs as putative drivers of known disease associations
-
Westra, H. J., Peters, M. J., Esko, T., Yaghootkar, H., Schurmann, C., Kettunen, J., Christiansen, M. W., Fairfax, B. P., Schramm, K., Powell, J. E. et al. (2013) Systematic identification of trans eQTLs as putative drivers of known disease associations. Nat. Genet., 45, U1238-U1195.
-
(2013)
Nat. Genet.
, vol.45
, pp. U1195-U1238
-
-
Westra, H.J.1
Peters, M.J.2
Esko, T.3
Yaghootkar, H.4
Schurmann, C.5
Kettunen, J.6
Christiansen, M.W.7
Fairfax, B.P.8
Schramm, K.9
Powell, J.E.10
-
56
-
-
84859935298
-
High levels of RNA-editing site conservation amongst 15 laboratory mouse strains
-
Danecek, P., Nellaker, C., McIntyre, R. E., Buendia-Buendia, J. E., Bumpstead, S., Ponting, C. P., Flint, J., Durbin, R., Keane, T. M. and Adams, D. J. (2012) High levels of RNA-editing site conservation amongst 15 laboratory mouse strains. Genome Biol., 13, 26-37.
-
(2012)
Genome Biol.
, vol.13
, pp. 26-37
-
-
Danecek, P.1
Nellaker, C.2
McIntyre, R.E.3
Buendia-Buendia, J.E.4
Bumpstead, S.5
Ponting, C.P.6
Flint, J.7
Durbin, R.8
Keane, T.M.9
Adams, D.J.10
-
57
-
-
84857374518
-
RNA editing underlies temperature adaptation in k+ channels from polar octopuses
-
Garrett, S. and Rosenthal, J. J. C. (2012) RNA editing underlies temperature adaptation in k+ channels from polar octopuses. Science, 335, 848-851.
-
(2012)
Science
, vol.335
, pp. 848-851
-
-
Garrett, S.1
Rosenthal, J.J.C.2
-
58
-
-
84891797364
-
RADAR: A rigorously annotated database of A-to-I RNA editing
-
Ramaswami, G. and Li, J. B. (2014) RADAR: a rigorously annotated database of A-to-I RNA editing. Nucleic Acids Res., 42, D109-D113.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. D109-D113
-
-
Ramaswami, G.1
Li, J.B.2
-
59
-
-
77954505224
-
DARNED: A DAtabase of RNA EDiting in humans
-
Kiran, A. and Baranov, P. V. (2010) DARNED: a DAtabase of RNa EDiting in humans. Bioinformatics, 26, 1772-1776.
-
(2010)
Bioinformatics
, vol.26
, pp. 1772-1776
-
-
Kiran, A.1
Baranov, P.V.2
-
60
-
-
84873531277
-
Recoding RNA editing of AZIN1 predisposes to hepatocellular carcinoma
-
Chen, L. L., Li, Y., Lin, C. H., Chan, T. H. M., Chow, R. K. K., Song, Y. Y., Liu, M., Yuan, Y. F., Fu, L., Kong, K. L. et al. (2013) Recoding RNA editing of AZIN1 predisposes to hepatocellular carcinoma. Nat. Med., 19, 209-216.
-
(2013)
Nat. Med.
, vol.19
, pp. 209-216
-
-
Chen, L.L.1
Li, Y.2
Lin, C.H.3
Chan, T.H.M.4
Chow, R.K.K.5
Song, Y.Y.6
Liu, M.7
Yuan, Y.F.8
Fu, L.9
Kong, K.L.10
-
61
-
-
84891751965
-
RSNPBase: A database for curated regulatory SNPs
-
Guo, L. Y., Du, Y., Chang, S. H., Zhang, K. L. and Wang, J. (2014) rSNPBase: a database for curated regulatory SNPs. Nucleic Acids Res., 42, D1033-D1039.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. D1033-D1039
-
-
Guo, L.Y.1
Du, Y.2
Chang, S.H.3
Zhang, K.L.4
Wang, J.5
|