메뉴 건너뛰기




Volumn 477, Issue 1, 2016, Pages 150-154

Prediction of cell-penetrating peptides with feature selection techniques

Author keywords

Analysis of variance; Cell penetrating peptides; g gap dipeptide composition; Support vector machine

Indexed keywords

CELL PENETRATING PEPTIDE; DIPEPTIDE;

EID: 84976649929     PISSN: 0006291X     EISSN: 10902104     Source Type: Journal    
DOI: 10.1016/j.bbrc.2016.06.035     Document Type: Article
Times cited : (96)

References (28)
  • 1
    • 0024262589 scopus 로고
    • Cellular uptake of the tat protein from human immunodeficiency virus
    • [1] Frankel, A.D., Pabo, C.O., Cellular uptake of the tat protein from human immunodeficiency virus. Cell 55 (1988), 1189–1193.
    • (1988) Cell , vol.55 , pp. 1189-1193
    • Frankel, A.D.1    Pabo, C.O.2
  • 2
    • 0030904245 scopus 로고    scopus 로고
    • A truncated HIV-1 Tat protein basic domain rapidly translocates through the plasma membrane and accumulates in the cell nucleus
    • [2] Vives, E., Brodin, P., Lebleu, B., A truncated HIV-1 Tat protein basic domain rapidly translocates through the plasma membrane and accumulates in the cell nucleus. J. Biol. Chem. 272 (1997), 16010–16017.
    • (1997) J. Biol. Chem. , vol.272 , pp. 16010-16017
    • Vives, E.1    Brodin, P.2    Lebleu, B.3
  • 6
    • 56549112749 scopus 로고    scopus 로고
    • Cell penetrating peptide inhibitors of nuclear factor-kappa B
    • [6] Orange, J.S., May, M.J., Cell penetrating peptide inhibitors of nuclear factor-kappa B. Cell Mol. Life Sci. 65 (2008), 3564–3591.
    • (2008) Cell Mol. Life Sci. , vol.65 , pp. 3564-3591
    • Orange, J.S.1    May, M.J.2
  • 11
    • 84930543023 scopus 로고    scopus 로고
    • Prediction and analysis of cell-penetrating peptides using pseudo-amino acid composition and random forest models
    • [11] Chen, L., Chu, C., Huang, T., Kong, X., Cai, Y.D., Prediction and analysis of cell-penetrating peptides using pseudo-amino acid composition and random forest models. Amino Acids 47 (2015), 1485–1493.
    • (2015) Amino Acids , vol.47 , pp. 1485-1493
    • Chen, L.1    Chu, C.2    Huang, T.3    Kong, X.4    Cai, Y.D.5
  • 12
    • 84870391329 scopus 로고    scopus 로고
    • Identification of mycobacterial membrane proteins and their types using over-represented tripeptide compositions
    • [12] Ding, C., Yuan, L.F., Guo, S.H., Lin, H., Chen, W., Identification of mycobacterial membrane proteins and their types using over-represented tripeptide compositions. J. Proteom. 77 (2012), 321–328.
    • (2012) J. Proteom. , vol.77 , pp. 321-328
    • Ding, C.1    Yuan, L.F.2    Guo, S.H.3    Lin, H.4    Chen, W.5
  • 13
    • 84903784979 scopus 로고    scopus 로고
    • Identification of bacteriophage virion proteins by the ANOVA feature selection and analysis
    • [13] Ding, H., Feng, P.M., Chen, W., Lin, H., Identification of bacteriophage virion proteins by the ANOVA feature selection and analysis. Mol. Biosyst. 10 (2014), 2229–2235.
    • (2014) Mol. Biosyst. , vol.10 , pp. 2229-2235
    • Ding, H.1    Feng, P.M.2    Chen, W.3    Lin, H.4
  • 14
    • 84921459189 scopus 로고    scopus 로고
    • Predicting the subcellular localization of mycobacterial proteins by incorporating the optimal tripeptides into the general form of pseudo amino acid composition
    • [14] Zhu, P.P., Li, W.C., Zhong, Z.J., Deng, E.Z., Ding, H., Chen, W., Lin, H., Predicting the subcellular localization of mycobacterial proteins by incorporating the optimal tripeptides into the general form of pseudo amino acid composition. Mol. Biosyst. 11 (2015), 558–563.
    • (2015) Mol. Biosyst. , vol.11 , pp. 558-563
    • Zhu, P.P.1    Li, W.C.2    Zhong, Z.J.3    Deng, E.Z.4    Ding, H.5    Chen, W.6    Lin, H.7
  • 17
    • 84969922991 scopus 로고    scopus 로고
    • Identify secretory protein of malaria parasite with modified quadratic discriminant algorithm and amino acid composition
    • [17] Feng, Y.E., Identify secretory protein of malaria parasite with modified quadratic discriminant algorithm and amino acid composition. Interdiscip. Sci. 8 (2015), 156–161.
    • (2015) Interdiscip. Sci. , vol.8 , pp. 156-161
    • Feng, Y.E.1
  • 18
    • 78650209947 scopus 로고    scopus 로고
    • Prediction of thermophilic proteins using feature selection technique
    • [18] Lin, H., Chen, W., Prediction of thermophilic proteins using feature selection technique. J. Microbiol. Methods 84 (2011), 67–70.
    • (2011) J. Microbiol. Methods , vol.84 , pp. 67-70
    • Lin, H.1    Chen, W.2
  • 19
    • 0035874091 scopus 로고    scopus 로고
    • Prediction of protein cellular attributes using pseudo-amino acid composition
    • [19] Chou, K.C., Prediction of protein cellular attributes using pseudo-amino acid composition. Proteins 43 (2001), 246–255.
    • (2001) Proteins , vol.43 , pp. 246-255
    • Chou, K.C.1
  • 20
    • 84962086169 scopus 로고    scopus 로고
    • Identification of immunoglobulins using Chou's pseudo amino acid composition with feature selection technique
    • [20] Tang, H., Chen, W., Lin, H., Identification of immunoglobulins using Chou's pseudo amino acid composition with feature selection technique. Mol. BioSyst. 12 (2016), 1269–1275.
    • (2016) Mol. BioSyst. , vol.12 , pp. 1269-1275
    • Tang, H.1    Chen, W.2    Lin, H.3
  • 21
    • 84962865637 scopus 로고    scopus 로고
    • iACP: a sequence-based tool for identifying anticancer peptides
    • [21] Chen, W., Ding, H., Feng, P.M., Lin, H., Chou, K.C., iACP: a sequence-based tool for identifying anticancer peptides. Oncotarget 7 (2016), 16895–16909.
    • (2016) Oncotarget , vol.7 , pp. 16895-16909
    • Chen, W.1    Ding, H.2    Feng, P.M.3    Lin, H.4    Chou, K.C.5
  • 22
    • 65349165718 scopus 로고    scopus 로고
    • Prediction of cell wall lytic enzymes using Chou's amphiphilic pseudo amino acid composition
    • [22] Ding, H., Luo, L., Lin, H., Prediction of cell wall lytic enzymes using Chou's amphiphilic pseudo amino acid composition. Protein Pept. Lett. 16 (2009), 351–355.
    • (2009) Protein Pept. Lett. , vol.16 , pp. 351-355
    • Ding, H.1    Luo, L.2    Lin, H.3
  • 23
    • 84945894566 scopus 로고    scopus 로고
    • Sequence-based prediction of RNA-binding proteins using random forest with minimum redundancy maximum relevance feature selection
    • [23] Ma, X., Guo, J., Sun, X., Sequence-based prediction of RNA-binding proteins using random forest with minimum redundancy maximum relevance feature selection. Biomed. Res. Int., 2015, 2015, 425810.
    • (2015) Biomed. Res. Int. , vol.2015 , pp. 425810
    • Ma, X.1    Guo, J.2    Sun, X.3
  • 24
    • 84906717523 scopus 로고    scopus 로고
    • Identification of inflammatory bowel disease-related proteins using a reverse k-nearest neighbor search
    • [24] Suratanee, A., Plaimas, K., Identification of inflammatory bowel disease-related proteins using a reverse k-nearest neighbor search. J. Bioinform. Comput. Biol., 12, 2014, 1450017.
    • (2014) J. Bioinform. Comput. Biol. , vol.12 , pp. 1450017
    • Suratanee, A.1    Plaimas, K.2
  • 25
    • 84896463976 scopus 로고    scopus 로고
    • iNuc-PseKNC: a sequence-based predictor for predicting nucleosome positioning in genomes with pseudo k-tuple nucleotide composition
    • [25] Guo, S.H., Deng, E.Z., Xu, L.Q., Ding, H., Lin, H., Chen, W., Chou, K.C., iNuc-PseKNC: a sequence-based predictor for predicting nucleosome positioning in genomes with pseudo k-tuple nucleotide composition. Bioinformatics 30 (2014), 1522–1529.
    • (2014) Bioinformatics , vol.30 , pp. 1522-1529
    • Guo, S.H.1    Deng, E.Z.2    Xu, L.Q.3    Ding, H.4    Lin, H.5    Chen, W.6    Chou, K.C.7
  • 26
    • 84945265673 scopus 로고    scopus 로고
    • DSPMP: Discriminating secretory proteins of malaria parasite by hybridizing different descriptors of Chou's pseudo amino acid patterns
    • [26] Fan, G.L., Zhang, X.Y., Liu, Y.L., Nang, Y., Wang, H., DSPMP: Discriminating secretory proteins of malaria parasite by hybridizing different descriptors of Chou's pseudo amino acid patterns. J. Comput. Chem. 36 (2015), 2317–2327.
    • (2015) J. Comput. Chem. , vol.36 , pp. 2317-2327
    • Fan, G.L.1    Zhang, X.Y.2    Liu, Y.L.3    Nang, Y.4    Wang, H.5
  • 27
    • 84941040066 scopus 로고    scopus 로고
    • iPro54-PseKNC: a sequence-based predictor for identifying sigma-54 promoters in prokaryote with pseudo k-tuple nucleotide composition
    • [27] Lin, H., Deng, E.Z., Ding, H., Chen, W., Chou, K.C., iPro54-PseKNC: a sequence-based predictor for identifying sigma-54 promoters in prokaryote with pseudo k-tuple nucleotide composition. Nucl. Acids Res. 42 (2014), 12961–12972.
    • (2014) Nucl. Acids Res. , vol.42 , pp. 12961-12972
    • Lin, H.1    Deng, E.Z.2    Ding, H.3    Chen, W.4    Chou, K.C.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.