-
1
-
-
80052183433
-
siRNA versus pharmacological inhibition of endocytic pathways for studying cellular uptake of cell penetrating peptides
-
1:CAS:528:DC%2BC3cXhsVCmtr7J 21529648
-
Al-Soraj MH, Watkins CL, Vercauteren D, De Smedt SC, Braeckmans K, Jones AT (2010) siRNA versus pharmacological inhibition of endocytic pathways for studying cellular uptake of cell penetrating peptides. J Control Release 148(1):e86-87
-
(2010)
J Control Release
, vol.148
, Issue.1
, pp. 86-87
-
-
Al-Soraj, M.H.1
Watkins, C.L.2
Vercauteren, D.3
De Smedt, S.C.4
Braeckmans, K.5
Jones, A.T.6
-
3
-
-
18144406581
-
Solving the protein sequence metric problem
-
1:CAS:528:DC%2BD2MXktlygt78%3D 1088356 15851683
-
Atchley WR, Zhao J, Fernandes AD, Drüke T (2005) Solving the protein sequence metric problem. Proc Natl Acad Sci USA 102(18):6395-6400
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, Issue.18
, pp. 6395-6400
-
-
Atchley, W.R.1
Zhao, J.2
Fernandes, A.D.3
Drüke, T.4
-
4
-
-
0033931867
-
Assessing the accuracy of prediction algorithms for classification: an overview
-
1:CAS:528:DC%2BD3cXlvVKqt74%3D 10871264
-
Baldi P, Brunak S, Chauvin Y, Andersen C, Nielsen H (2000) Assessing the accuracy of prediction algorithms for classification: an overview. Bioinformatics 16(5):412-424
-
(2000)
Bioinformatics
, vol.16
, Issue.5
, pp. 412-424
-
-
Baldi, P.1
Brunak, S.2
Chauvin, Y.3
Andersen, C.4
Nielsen, H.5
-
5
-
-
84876858007
-
Recent developments and future directions at current computer aided drug design
-
1:CAS:528:DC%2BC3sXlt1GmsLk%3D 23905927
-
Basak SC (2013) Recent developments and future directions at current computer aided drug design. Curr Comput Aided Drug Des 9(1):1
-
(2013)
Curr Comput Aided Drug Des
, vol.9
, Issue.1
, pp. 1
-
-
Basak, S.C.1
-
6
-
-
0035478854
-
Random forests
-
Breiman L (2001) Random forests. Mach Learn 45(1):5-32
-
(2001)
Mach Learn
, vol.45
, Issue.1
, pp. 5-32
-
-
Breiman, L.1
-
7
-
-
61549096128
-
Prediction of protein secondary structure content by using the concept of Chou's pseudo amino acid composition and support vector machine
-
19149669
-
Chen C, Chen L, Zou X, Cai P (2009) Prediction of protein secondary structure content by using the concept of Chou's pseudo amino acid composition and support vector machine. Protein Pept Lett 16(1):27-31
-
(2009)
Protein Pept Lett
, vol.16
, Issue.1
, pp. 27-31
-
-
Chen, C.1
Chen, L.2
Zou, X.3
Cai, P.4
-
8
-
-
77954074097
-
Predicting the network of substrate-enzyme-product triads by combining compound similarity and functional domain composition
-
Chen L, Feng KY, Cai YD, Chou KC, Li HP (2010) Predicting the network of substrate-enzyme-product triads by combining compound similarity and functional domain composition. BMC Bioinform 11:293
-
(2010)
BMC Bioinform
, vol.11
, pp. 293
-
-
Chen, L.1
Feng, K.Y.2
Cai, Y.D.3
Chou, K.C.4
Li, H.P.5
-
9
-
-
84859732713
-
Predicting anatomical therapeutic chemical (ATC) classification of drugs by integrating chemical-chemical interactions and similarities
-
1:CAS:528:DC%2BC38Xmt1ehsbw%3D 3325992 22514724
-
Chen L, Zeng WM, Cai YD, Feng KY, Chou KC (2012) Predicting anatomical therapeutic chemical (ATC) classification of drugs by integrating chemical-chemical interactions and similarities. PLoS One 7(4):e35254
-
(2012)
PLoS One
, vol.7
, Issue.4
, pp. 35254
-
-
Chen, L.1
Zeng, W.M.2
Cai, Y.D.3
Feng, K.Y.4
Chou, K.C.5
-
10
-
-
84874857867
-
Prediction of metabolic pathway using graph property, chemical functional group and chemical structural set
-
1:CAS:528:DC%2BC3sXmtlCitLw%3D
-
Chen L, Zeng W-M, Cai Y-D, Huang T (2013) Prediction of metabolic pathway using graph property, chemical functional group and chemical structural set. Curr Bioinform 8(2):200-207
-
(2013)
Curr Bioinform
, vol.8
, Issue.2
, pp. 200-207
-
-
Chen, L.1
Zeng, W.-M.2
Cai, Y.-D.3
Huang, T.4
-
11
-
-
84907190397
-
Finding candidate drugs for hepatitis C based on chemical-chemical and chemical-protein interactions
-
4166673 25225900
-
Chen L, Lu J, Huang T, Yin J, Wei L, Cai Y-D (2014a) Finding candidate drugs for hepatitis C based on chemical-chemical and chemical-protein interactions. PLoS One 9(9):e107767
-
(2014)
PLoS One
, vol.9
, Issue.9
-
-
Chen, L.1
Lu, J.2
Huang, T.3
Yin, J.4
Wei, L.5
Cai, Y.-D.6
-
12
-
-
84897713538
-
A hybrid method for prediction and repositioning of drug anatomical therapeutic chemical classes
-
1:CAS:528:DC%2BC2cXjsFCrs7w%3D
-
Chen L, Lu J, Zhang N, Huang T, Cai Y-D (2014b) A hybrid method for prediction and repositioning of drug anatomical therapeutic chemical classes. Mol Bio Syst 10(4):868-877
-
(2014)
Mol Bio Syst
, vol.10
, Issue.4
, pp. 868-877
-
-
Chen, L.1
Lu, J.2
Zhang, N.3
Huang, T.4
Cai, Y.-D.5
-
13
-
-
0035874091
-
Prediction of protein cellular attributes using pseudo-amino acid composition
-
1:CAS:528:DC%2BD3MXjtFOls74%3D 11288174
-
Chou KC (2001) Prediction of protein cellular attributes using pseudo-amino acid composition. Proteins 43(3):246-255
-
(2001)
Proteins
, vol.43
, Issue.3
, pp. 246-255
-
-
Chou, K.C.1
-
14
-
-
78751550064
-
Identify Golgi protein types with modified mahalanobis discriminant algorithm and pseudo amino acid composition
-
1:CAS:528:DC%2BC3MXkslajt7o%3D 20955168
-
Ding H, Liu L, Guo F-B, Huang J, Lin H (2011) Identify Golgi protein types with modified mahalanobis discriminant algorithm and pseudo amino acid composition. Protein Pept Lett 18(1):58-63
-
(2011)
Protein Pept Lett
, vol.18
, Issue.1
, pp. 58-63
-
-
Ding, H.1
Liu, L.2
Guo, F.-B.3
Huang, J.4
Lin, H.5
-
15
-
-
77952580991
-
Secondary structure of cell-penetrating peptides controls membrane interaction and insertion
-
1:CAS:528:DC%2BC3cXlsFOjtL0%3D 20214875
-
Eiriksdottir E, Konate K, Langel U, Divita G, Deshayes S (2010) Secondary structure of cell-penetrating peptides controls membrane interaction and insertion. Biochim Biophys Acta 1798(6):1119-1128
-
(2010)
Biochim Biophys Acta
, vol.1798
, Issue.6
, pp. 1119-1128
-
-
Eiriksdottir, E.1
Konate, K.2
Langel, U.3
Divita, G.4
Deshayes, S.5
-
16
-
-
0029946575
-
Prediction of secondary structural content of proteins from their amino acid composition alone I: new analytic vector decomposition methods
-
1:CAS:528:DyaK28XktlShur8%3D 8811732
-
Eisenhaber F, Imperiale F, Argos P, Frommel C (1996) Prediction of secondary structural content of proteins from their amino acid composition alone I: new analytic vector decomposition methods. Proteins 25(2):157-168
-
(1996)
Proteins
, vol.25
, Issue.2
, pp. 157-168
-
-
Eisenhaber, F.1
Imperiale, F.2
Argos, P.3
Frommel, C.4
-
17
-
-
27744557054
-
Cell-penetrating peptides: mechanisms and applications
-
1:CAS:528:DC%2BD2MXhtFOrt7jM 16305497
-
El-Andaloussi S, Holm T, Langel U (2005) Cell-penetrating peptides: mechanisms and applications. Curr Pharm Des 11(28):3597-3611
-
(2005)
Curr Pharm Des
, vol.11
, Issue.28
, pp. 3597-3611
-
-
El-Andaloussi, S.1
Holm, T.2
Langel, U.3
-
18
-
-
79957454873
-
An unusual cell penetrating peptide identified using a plasmid display-based functional selection platform
-
1:CAS:528:DC%2BC3MXit1GitLk%3D 3098927 21291271
-
Gao S, Simon MJ, Hue CD, Morrison B 3rd, Banta S (2011) An unusual cell penetrating peptide identified using a plasmid display-based functional selection platform. ACS Chem Biol 6(5):484-491
-
(2011)
ACS Chem Biol
, vol.6
, Issue.5
, pp. 484-491
-
-
Gao, S.1
Simon, M.J.2
Hue, C.D.3
Morrison, B.4
Banta, S.5
-
19
-
-
84875174578
-
In silico approaches for designing highly effective cell penetrating peptides
-
1:CAS:528:DC%2BC3sXnvVyju7g%3D 3615965 23517638
-
Gautam A, Chaudhary K, Kumar R, Sharma A, Kapoor P, Tyagi A, Raghava GP (2013) In silico approaches for designing highly effective cell penetrating peptides. J Transl Med 11:74
-
(2013)
J Transl Med
, vol.11
, pp. 74
-
-
Gautam, A.1
Chaudhary, K.2
Kumar, R.3
Sharma, A.4
Kapoor, P.5
Tyagi, A.6
Raghava, G.P.7
-
20
-
-
84886433492
-
Predicting anticancer peptides with Chou's pseudo amino acid composition and investigating their mutagenicity via Ames test
-
1:CAS:528:DC%2BC3sXitVSgs7vP 24035842
-
Hajisharifi Z, Piryaiee M, Mohammad Beigi M, Behbahani M, Mohabatkar H (2014) Predicting anticancer peptides with Chou's pseudo amino acid composition and investigating their mutagenicity via Ames test. J Theor Biol 341:34-40
-
(2014)
J Theor Biol
, vol.341
, pp. 34-40
-
-
Hajisharifi, Z.1
Piryaiee, M.2
Mohammad Beigi, M.3
Behbahani, M.4
Mohabatkar, H.5
-
21
-
-
28844504689
-
Prediction of cell-penetrating peptides
-
Hällbrink M, Kilk K, Elmquist A, Lundberg P, Lindgren M, Jiang Y, Pooga M, Soomets U, Langel Ü (2005) Prediction of cell-penetrating peptides. Int J Pept Res Ther 11(4):249-259
-
(2005)
Int J Pept Res Ther
, vol.11
, Issue.4
, pp. 249-259
-
-
Hällbrink, M.1
Kilk, K.2
Elmquist, A.3
Lundberg, P.4
Lindgren, M.5
Jiang, Y.6
Pooga, M.7
Soomets, U.8
Langel, Ü.9
-
22
-
-
84874534864
-
An ensemble method for predicting subnuclear localizations from primary protein structures
-
1:CAS:528:DC%2BC3sXjvV2hurc%3D 3584121 23460833
-
Han GS, Anh V, Krishnajith AP, Tian Y-C (2013) An ensemble method for predicting subnuclear localizations from primary protein structures. PLoS One 8(2):e57225
-
(2013)
PLoS One
, vol.8
, Issue.2
-
-
Han, G.S.1
Anh, V.2
Krishnajith, A.P.3
Tian, Y.-C.4
-
23
-
-
38949213664
-
Predicting cell-penetrating peptides
-
1:CAS:528:DC%2BD1cXitVGnsLo%3D 18045726
-
Hansen M, Kilk K, Langel Ü (2008) Predicting cell-penetrating peptides. Adv Drug Deliv Rev 60(4):572-579
-
(2008)
Adv Drug Deliv Rev
, vol.60
, Issue.4
, pp. 572-579
-
-
Hansen, M.1
Kilk, K.2
Langel, Ü.3
-
24
-
-
78649756877
-
Predicting membrane protein types by fusing composite protein sequence features into pseudo amino acid composition
-
21110985
-
Hayat M, Khan A (2010) Predicting membrane protein types by fusing composite protein sequence features into pseudo amino acid composition. J Theor Biol 271(1):10-17
-
(2010)
J Theor Biol
, vol.271
, Issue.1
, pp. 10-17
-
-
Hayat, M.1
Khan, A.2
-
25
-
-
68549110328
-
Twenty years of cell-penetrating peptides: from molecular mechanisms to therapeutics
-
1:CAS:528:DC%2BD1MXmsFWju7k%3D 2697800 19309362
-
Heitz F, Morris MC, Divita G (2009) Twenty years of cell-penetrating peptides: from molecular mechanisms to therapeutics. Br J Pharmacol 157(2):195-206
-
(2009)
Br J Pharmacol
, vol.157
, Issue.2
, pp. 195-206
-
-
Heitz, F.1
Morris, M.C.2
Divita, G.3
-
26
-
-
33845874641
-
Predicting gene expression level from codon usage bias
-
1:CAS:528:DC%2BD2sXnvFWgtg%3D%3D 17038449
-
Henry I, Sharp PM (2007) Predicting gene expression level from codon usage bias. Mol Biol Evol 24(1):10-12
-
(2007)
Mol Biol Evol
, vol.24
, Issue.1
, pp. 10-12
-
-
Henry, I.1
Sharp, P.M.2
-
27
-
-
34548161524
-
Studying the uptake of cell-penetrating peptides
-
1:CAS:528:DC%2BD28XhtFOitb%2FK 17406337
-
Holm T, Johansson H, Lundberg P, Pooga M, Lindgren M, Langel U (2006) Studying the uptake of cell-penetrating peptides. Nat Protoc 1(2):1001-1005
-
(2006)
Nat Protoc
, vol.1
, Issue.2
, pp. 1001-1005
-
-
Holm, T.1
Johansson, H.2
Lundberg, P.3
Pooga, M.4
Lindgren, M.5
Langel, U.6
-
28
-
-
77955199287
-
Analysis and prediction of the metabolic stability of proteins based on their sequential features, subcellular locations and interaction networks
-
2881046 20532046
-
Huang T, Shi XH, Wang P, He Z, Feng KY, Hu L, Kong X, Li YX, Cai YD, Chou KC (2010) Analysis and prediction of the metabolic stability of proteins based on their sequential features, subcellular locations and interaction networks. PLoS One 5(6):e10972
-
(2010)
PLoS One
, vol.5
, Issue.6
-
-
Huang, T.1
Shi, X.H.2
Wang, P.3
He, Z.4
Feng, K.Y.5
Hu, L.6
Kong, X.7
Li, Y.X.8
Cai, Y.D.9
Chou, K.C.10
-
29
-
-
80053220447
-
Classification and analysis of regulatory pathways using graph property, biochemical and physicochemical property, and functional property
-
1:CAS:528:DC%2BC3MXhtlCjs7fI 3182212 21980418
-
Huang T, Chen L, Cai Y, Chou C (2011) Classification and analysis of regulatory pathways using graph property, biochemical and physicochemical property, and functional property. PLoS One 6(9):e25297
-
(2011)
PLoS One
, vol.6
, Issue.9
-
-
Huang, T.1
Chen, L.2
Cai, Y.3
Chou, C.4
-
30
-
-
84899863321
-
Prediction of multi-type membrane proteins in human by an integrated approach
-
3968155 24676214
-
Huang G, Zhang Y, Chen L, Zhang N, Huang T, Cai Y-D (2014) Prediction of multi-type membrane proteins in human by an integrated approach. PLoS One 9(3):e93553
-
(2014)
PLoS One
, vol.9
, Issue.3
-
-
Huang, G.1
Zhang, Y.2
Chen, L.3
Zhang, N.4
Huang, T.5
Cai, Y.-D.6
-
31
-
-
33747038452
-
Cell-penetrating peptides: a brief introduction
-
16574060
-
Jarver P, Langel U (2006) Cell-penetrating peptides: a brief introduction. Biochim Biophys Acta 1758(3):260-263
-
(2006)
Biochim Biophys Acta
, vol.1758
, Issue.3
, pp. 260-263
-
-
Jarver, P.1
Langel, U.2
-
32
-
-
78649326452
-
AFP-Pred: a random forest approach for predicting antifreeze proteins from sequence-derived properties
-
1:CAS:528:DC%2BC3MXjsVCjtg%3D%3D 21056045
-
Kandaswamy KK, Chou KC, Martinetz T, Moller S, Suganthan PN, Sridharan S, Pugalenthi G (2011) AFP-Pred: a random forest approach for predicting antifreeze proteins from sequence-derived properties. J Theor Biol 270:56-62
-
(2011)
J Theor Biol
, vol.270
, pp. 56-62
-
-
Kandaswamy, K.K.1
Chou, K.C.2
Martinetz, T.3
Moller, S.4
Suganthan, P.N.5
Sridharan, S.6
Pugalenthi, G.7
-
33
-
-
0001122762
-
A study of cross-validation and bootstrap for accuracy estimation and model selection
-
Lawrence Erlbaum Associates Ltd
-
Kohavi R (1995) A study of cross-validation and bootstrap for accuracy estimation and model selection. In: Proceedings of international joint conference on artificial intelligence, 1995. Lawrence Erlbaum Associates Ltd, pp 1137-1145
-
(1995)
Proceedings of international joint conference on artificial intelligence, 1995
, pp. 1137-1145
-
-
Kohavi, R.1
-
34
-
-
84890593591
-
Accurate prediction of protein structural classes by incorporating predicted secondary structure information into the general form of Chou's pseudo amino acid composition
-
1:CAS:528:DC%2BC2cXhvFGqsr4%3D 24316044
-
Kong L, Zhang L, Lv J (2014) Accurate prediction of protein structural classes by incorporating predicted secondary structure information into the general form of Chou's pseudo amino acid composition. J Theor Biol 344:12-18
-
(2014)
J Theor Biol
, vol.344
, pp. 12-18
-
-
Kong, L.1
Zhang, L.2
Lv, J.3
-
35
-
-
84863237869
-
Screening of cell-penetrating peptides using mRNA display
-
1:CAS:528:DC%2BC3MXhs1aisbnJ 22076844
-
Lee JH, Song HS, Park TH, Lee SG, Kim BG (2012) Screening of cell-penetrating peptides using mRNA display. Biotechnol J 7(3):387-396
-
(2012)
Biotechnol J
, vol.7
, Issue.3
, pp. 387-396
-
-
Lee, J.H.1
Song, H.S.2
Park, T.H.3
Lee, S.G.4
Kim, B.G.5
-
36
-
-
84865446092
-
Prediction of protein-protein interaction sites by Random Forest algorithm with mRMR and IFS
-
1:CAS:528:DC%2BC38Xht1yktLnF 3429425 22937126
-
Li BQ, Feng KY, Chen L, Huang T, Cai YD (2012a) Prediction of protein-protein interaction sites by Random Forest algorithm with mRMR and IFS. PLoS One 7(8):e43927
-
(2012)
PLoS One
, vol.7
, Issue.8
-
-
Li, B.Q.1
Feng, K.Y.2
Chen, L.3
Huang, T.4
Cai, Y.D.5
-
37
-
-
84862499641
-
Prediction of protein domain with mRMR feature selection and analysis
-
1:CAS:528:DC%2BC38XptFalsLg%3D 3376124 22720092
-
Li BQ, Hu LL, Chen L, Feng KY, Cai YD, Chou KC (2012b) Prediction of protein domain with mRMR feature selection and analysis. PLoS One 7(6):e39308
-
(2012)
PLoS One
, vol.7
, Issue.6
-
-
Li, B.Q.1
Hu, L.L.2
Chen, L.3
Feng, K.Y.4
Cai, Y.D.5
Chou, K.C.6
-
38
-
-
84899550295
-
Prediction of aptamer-target interacting pairs with pseudo-amino acid composition
-
3899287 24466214
-
Li BQ, Zhang YC, Huang GH, Cui WR, Zhang N, Cai YD (2014a) Prediction of aptamer-target interacting pairs with pseudo-amino acid composition. PLoS One 9(1):e86729
-
(2014)
PLoS One
, vol.9
, Issue.1
-
-
Li, B.Q.1
Zhang, Y.C.2
Huang, G.H.3
Cui, W.R.4
Zhang, N.5
Cai, Y.D.6
-
39
-
-
84896839862
-
The prediction of methylation states in human DNA sequences based on hexanucleotide composition and feature selection
-
1:CAS:528:DC%2BC2cXjsFCltLo%3D
-
Li Z, Chen L, Lai Y, Dai Z, Zou X (2014b) The prediction of methylation states in human DNA sequences based on hexanucleotide composition and feature selection. Anal Methods 6(6):1897-1904
-
(2014)
Anal Methods
, vol.6
, Issue.6
, pp. 1897-1904
-
-
Li, Z.1
Chen, L.2
Lai, Y.3
Dai, Z.4
Zou, X.5
-
40
-
-
42749090472
-
The modified Mahalanobis discriminant for predicting outer membrane proteins by using Chou's pseudo amino acid composition
-
1:CAS:528:DC%2BD1cXlslWisL8%3D 18355838
-
Lin H (2008) The modified Mahalanobis discriminant for predicting outer membrane proteins by using Chou's pseudo amino acid composition. J Theor Biol 252(2):350-356
-
(2008)
J Theor Biol
, vol.252
, Issue.2
, pp. 350-356
-
-
Lin, H.1
-
41
-
-
80052855771
-
iDNA-Prot: identification of DNA binding proteins using random forest with grey model
-
1:CAS:528:DC%2BC3MXht1Oms7%2FO 3174210 21935457
-
Lin WZ, Fang JA, Xiao X, Chou KC (2011) iDNA-Prot: identification of DNA binding proteins using random forest with grey model. PLoS One 6:e24756
-
(2011)
PLoS One
, vol.6
-
-
Lin, W.Z.1
Fang, J.A.2
Xiao, X.3
Chou, K.C.4
-
42
-
-
84872800285
-
PepFect15, a novel endosomolytic cell-penetrating peptide for oligonucleotide delivery via scavenger receptors
-
1:CAS:528:DC%2BC38XhvVWju7zO 23200958
-
Lindberg S, Munoz-Alarcon A, Helmfors H, Mosqueira D, Gyllborg D, Tudoran O, Langel U (2013) PepFect15, a novel endosomolytic cell-penetrating peptide for oligonucleotide delivery via scavenger receptors. Int J Pharm 441(1-2):242-247
-
(2013)
Int J Pharm
, vol.441
, Issue.1-2
, pp. 242-247
-
-
Lindberg, S.1
Munoz-Alarcon, A.2
Helmfors, H.3
Mosqueira, D.4
Gyllborg, D.5
Tudoran, O.6
Langel, U.7
-
43
-
-
79959365312
-
Mechanisms of cellular uptake of cell-penetrating peptides
-
3103903 21687343
-
Madani F, Lindberg S, Langel U, Futaki S, Graslund A (2011) Mechanisms of cellular uptake of cell-penetrating peptides. J Biophys 2011:414729
-
(2011)
J Biophys
, vol.2011
, pp. 414729
-
-
Madani, F.1
Lindberg, S.2
Langel, U.3
Futaki, S.4
Graslund, A.5
-
44
-
-
63449106826
-
A reexamination of correlations of amino acids with particular secondary structures
-
1:CAS:528:DC%2BD1MXivFWgtrY%3D 19280326
-
Malkov SN, Zivkovic MV, Beljanski MV, Stojanovic SD, Zaric SD (2009) A reexamination of correlations of amino acids with particular secondary structures. Protein J 28(2):74-86
-
(2009)
Protein J
, vol.28
, Issue.2
, pp. 74-86
-
-
Malkov, S.N.1
Zivkovic, M.V.2
Beljanski, M.V.3
Stojanovic, S.D.4
Zaric, S.D.5
-
45
-
-
84869447010
-
Protein structure prediction from sequence variation
-
1:CAS:528:DC%2BC38Xhs1elt7bM 4319528 23138306
-
Marks DS, Hopf TA, Sander C (2012) Protein structure prediction from sequence variation. Nat Biotechnol 30(11):1072-1080
-
(2012)
Nat Biotechnol
, vol.30
, Issue.11
, pp. 1072-1080
-
-
Marks, D.S.1
Hopf, T.A.2
Sander, C.3
-
46
-
-
0016772212
-
Comparison of the predicted and observed secondary structure of T4 phage lysozyme. Biochimica et Biophysica Acta (BBA)-Protein
-
1:CAS:528:DyaE2MXlslCksbk%3D
-
Matthews B (1975) Comparison of the predicted and observed secondary structure of T4 phage lysozyme. Biochimica et Biophysica Acta (BBA)-Protein. Structure 405(2):442-451
-
(1975)
Structure
, vol.405
, Issue.2
, pp. 442-451
-
-
Matthews, B.1
-
47
-
-
79955564229
-
Prediction of GABAA receptor proteins using the concept of Chou's pseudo-amino acid composition and support vector machine
-
1:CAS:528:DC%2BC3MXntlGhsLw%3D 21536049
-
Mohabatkar H, Mohammad Beigi M, Esmaeili A (2011) Prediction of GABAA receptor proteins using the concept of Chou's pseudo-amino acid composition and support vector machine. J Theor Biol 281(1):18-23
-
(2011)
J Theor Biol
, vol.281
, Issue.1
, pp. 18-23
-
-
Mohabatkar, H.1
Mohammad Beigi, M.2
Esmaeili, A.3
-
48
-
-
84876536009
-
Xentry, a new class of cell-penetrating peptide uniquely equipped for delivery of drugs
-
3627194 23588666
-
Montrose K, Yang Y, Sun X, Wiles S, Krissansen GW (2013) Xentry, a new class of cell-penetrating peptide uniquely equipped for delivery of drugs. Sci Rep 3:1661
-
(2013)
Sci Rep
, vol.3
, pp. 1661
-
-
Montrose, K.1
Yang, Y.2
Sun, X.3
Wiles, S.4
Krissansen, G.W.5
-
49
-
-
58149099412
-
Comparison of cellular uptake using 22 CPPs in 4 different cell lines
-
1:CAS:528:DC%2BD1cXhtl2jsbrP 19053306
-
Mueller J, Kretzschmar I, Volkmer R, Boisguerin P (2008) Comparison of cellular uptake using 22 CPPs in 4 different cell lines. Bioconjug Chem 19(12):2363-2374
-
(2008)
Bioconjug Chem
, vol.19
, Issue.12
, pp. 2363-2374
-
-
Mueller, J.1
Kretzschmar, I.2
Volkmer, R.3
Boisguerin, P.4
-
50
-
-
33751251344
-
Influence of protein transduction domains on intracellular delivery of macromolecules
-
1:CAS:528:DC%2BD28XhtFOisLrP 17076596
-
Murriel CL, Dowdy SF (2006) Influence of protein transduction domains on intracellular delivery of macromolecules. Expert Opin Drug Deliv 3(6):739-746
-
(2006)
Expert Opin Drug Deliv
, vol.3
, Issue.6
, pp. 739-746
-
-
Murriel, C.L.1
Dowdy, S.F.2
-
51
-
-
84856475734
-
Identifying bacterial virulent proteins by fusing a set of classifiers based on variants of Chou's pseudo amino acid composition and on evolutionary information
-
Nanni L, Lumini A, Gupta D, Garg A (2012) Identifying bacterial virulent proteins by fusing a set of classifiers based on variants of Chou's pseudo amino acid composition and on evolutionary information. IEEE/ACM Trans Comput Biol Bioinform (TCBB) 9(2):467-475
-
(2012)
IEEE/ACM Trans Comput Biol Bioinform (TCBB)
, vol.9
, Issue.2
, pp. 467-475
-
-
Nanni, L.1
Lumini, A.2
Gupta, D.3
Garg, A.4
-
52
-
-
84865968938
-
Computational drug discovery
-
1:CAS:528:DC%2BC38Xht12lt7vL 4003107 22922346
-
Ou-Yang SS, Lu JY, Kong XQ, Liang ZJ, Luo C, Jiang H (2012) Computational drug discovery. Acta Pharmacol Sin 33(9):1131-1140
-
(2012)
Acta Pharmacol Sin
, vol.33
, Issue.9
, pp. 1131-1140
-
-
Ou-Yang, S.S.1
Lu, J.Y.2
Kong, X.Q.3
Liang, Z.J.4
Luo, C.5
Jiang, H.6
-
53
-
-
24344458137
-
Feature selection based on mutual information: criteria of max-dependency, max-relevance, and min-redundancy
-
Peng H, Long F, Ding C (2005) Feature selection based on mutual information: criteria of max-dependency, max-relevance, and min-redundancy. IEEE Trans Pattern Anal Mach Intell 1226-1238
-
(2005)
IEEE Trans Pattern Anal Mach Intell
, pp. 1226-1238
-
-
Peng, H.1
Long, F.2
Ding, C.3
-
54
-
-
84858167590
-
RSARF: prediction of residue solvent accessibility from protein sequence using random forest method
-
1:CAS:528:DC%2BC38XhvFKjtr8%3D 21919860
-
Pugalenthi G, Kandaswamy KK, Chou KC, Vivekanandan S, Kolatkar P (2012) RSARF: prediction of residue solvent accessibility from protein sequence using random forest method. Protein Pept Lett 19:50-56
-
(2012)
Protein Pept Lett
, vol.19
, pp. 50-56
-
-
Pugalenthi, G.1
Kandaswamy, K.K.2
Chou, K.C.3
Vivekanandan, S.4
Kolatkar, P.5
-
55
-
-
17644386231
-
Cellular uptake of unconjugated TAT peptide involves clathrin-dependent endocytosis and heparan sulfate receptors
-
1:CAS:528:DC%2BD2MXjtFSltL4%3D 15687490
-
Richard JP, Melikov K, Brooks H, Prevot P, Lebleu B, Chernomordik LV (2005) Cellular uptake of unconjugated TAT peptide involves clathrin-dependent endocytosis and heparan sulfate receptors. J Biol Chem 280(15):15300-15306
-
(2005)
J Biol Chem
, vol.280
, Issue.15
, pp. 15300-15306
-
-
Richard, J.P.1
Melikov, K.2
Brooks, H.3
Prevot, P.4
Lebleu, B.5
Chernomordik, L.V.6
-
56
-
-
65249112754
-
Predicting gene expression level from relative codon usage bias: an application to Escherichia coli genome
-
1:CAS:528:DC%2BD1MXitFyrsLg%3D 2646356 19131380
-
Roymondal U, Das S, Sahoo S (2009) Predicting gene expression level from relative codon usage bias: an application to Escherichia coli genome. DNA Res 16(1):13-30
-
(2009)
DNA Res
, vol.16
, Issue.1
, pp. 13-30
-
-
Roymondal, U.1
Das, S.2
Sahoo, S.3
-
57
-
-
59249095901
-
A machine-learning approach for predicting B-cell epitopes
-
1:CAS:528:DC%2BD1MXhsFersLk%3D 18947876
-
Rubinstein ND, Mayrose I, Pupko T (2009) A machine-learning approach for predicting B-cell epitopes. Mol Immunol 46(5):840-847
-
(2009)
Mol Immunol
, vol.46
, Issue.5
, pp. 840-847
-
-
Rubinstein, N.D.1
Mayrose, I.2
Pupko, T.3
-
58
-
-
81055126634
-
Prediction of cell penetrating peptides by support vector machines
-
1:CAS:528:DC%2BC3MXhtVSlt7zE 3136433 21779156
-
Sanders WS, Johnston CI, Bridges SM, Burgess SC, Willeford KO (2011) Prediction of cell penetrating peptides by support vector machines. PLoS Comput Biol 7(7):e1002101
-
(2011)
PLoS Comput Biol
, vol.7
, Issue.7
-
-
Sanders, W.S.1
Johnston, C.I.2
Bridges, S.M.3
Burgess, S.C.4
Willeford, K.O.5
-
59
-
-
0142210248
-
A computational pipeline for protein structure prediction and analysis at genome scale
-
1:CAS:528:DC%2BD3sXot1CrsrY%3D 14555633
-
Shah M, Passovets S, Kim D, Ellrott K, Wang L, Vokler I, LoCascio P, Xu D, Xu Y (2003) A computational pipeline for protein structure prediction and analysis at genome scale. Bioinformatics 19(15):1985-1996
-
(2003)
Bioinformatics
, vol.19
, Issue.15
, pp. 1985-1996
-
-
Shah, M.1
Passovets, S.2
Kim, D.3
Ellrott, K.4
Wang, L.5
Vokler, I.6
LoCascio, P.7
Xu, D.8
Xu, Y.9
-
60
-
-
79960575553
-
3dswap-pred: prediction of 3D domain swapping from protein sequence using random forest approach
-
1:CAS:528:DC%2BC3MXht1Cgt7bE 21592079
-
Shameer K, Pugalenthi G, Kandaswamy KK, Sowdhamini R (2011) 3dswap-pred: prediction of 3D domain swapping from protein sequence using random forest approach. Protein Pept Lett 18:1010-1020
-
(2011)
Protein Pept Lett
, vol.18
, pp. 1010-1020
-
-
Shameer, K.1
Pugalenthi, G.2
Kandaswamy, K.K.3
Sowdhamini, R.4
-
61
-
-
84907013321
-
nDNA-prot: identification of DNA-binding proteins based on unbalanced classification
-
Song L, Li D, Zeng X, Wu Y, Guo L, Zou Q (2014) nDNA-prot: identification of DNA-binding proteins based on unbalanced classification. BMC Bioinform 15(1):298
-
(2014)
BMC Bioinform
, vol.15
, Issue.1
, pp. 298
-
-
Song, L.1
Li, D.2
Zeng, X.3
Wu, Y.4
Guo, L.5
Zou, Q.6
-
62
-
-
66349138469
-
Roles of arginine and lysine residues in the translocation of a cell-penetrating peptide from (13)C, (31)P, and (19)F solid-state NMR
-
1:CAS:528:DC%2BD1MXlsFKrs7k%3D 2723743 19364134
-
Su Y, Doherty T, Waring AJ, Ruchala P, Hong M (2009) Roles of arginine and lysine residues in the translocation of a cell-penetrating peptide from (13)C, (31)P, and (19)F solid-state NMR. Biochemistry 48(21):4587-4595
-
(2009)
Biochemistry
, vol.48
, Issue.21
, pp. 4587-4595
-
-
Su, Y.1
Doherty, T.2
Waring, A.J.3
Ruchala, P.4
Hong, M.5
-
63
-
-
84875173596
-
Computational phosphorylation site prediction in plants using random forests and organism-specific instance weights
-
1:CAS:528:DC%2BC3sXktFKqur0%3D 23341503
-
Trost B, Kusalik A (2013) Computational phosphorylation site prediction in plants using random forests and organism-specific instance weights. Bioinformatics 29(6):686-694
-
(2013)
Bioinformatics
, vol.29
, Issue.6
, pp. 686-694
-
-
Trost, B.1
Kusalik, A.2
-
64
-
-
56049093057
-
Cell-penetrating and cell-targeting peptides in drug delivery
-
1:CAS:528:DC%2BD1cXhtlyhsLjP 18440319
-
Vives E, Schmidt J, Pelegrin A (2008) Cell-penetrating and cell-targeting peptides in drug delivery. Biochim Biophys Acta 1786(2):126-138
-
(2008)
Biochim Biophys Acta
, vol.1786
, Issue.2
, pp. 126-138
-
-
Vives, E.1
Schmidt, J.2
Pelegrin, A.3
-
65
-
-
79954616130
-
Prediction of antimicrobial peptides based on sequence alignment and feature selection methods
-
1:CAS:528:DC%2BC3MXltV2rtb8%3D 3076375 21533231
-
Wang P, Hu L, Liu G, Jiang N, Chen X, Xu J, Zheng W, Li L, Tan M, Chen Z, Song H, Cai YD, Chou KC (2011) Prediction of antimicrobial peptides based on sequence alignment and feature selection methods. PLoS ONE 6(4):e18476
-
(2011)
PLoS ONE
, vol.6
, Issue.4
-
-
Wang, P.1
Hu, L.2
Liu, G.3
Jiang, N.4
Chen, X.5
Xu, J.6
Zheng, W.7
Li, L.8
Tan, M.9
Chen, Z.10
Song, H.11
Cai, Y.D.12
Chou, K.C.13
-
67
-
-
84899557789
-
Identification of thyroid carcinoma related genes with mRMR and shortest path approaches
-
3981740 24718460
-
Xu Y, Deng Y, Ji Z, Liu H, Liu Y, Peng H, Wu J, Fan J (2014) Identification of thyroid carcinoma related genes with mRMR and shortest path approaches. PLoS One 9(4):e94022
-
(2014)
PLoS One
, vol.9
, Issue.4
-
-
Xu, Y.1
Deng, Y.2
Ji, Z.3
Liu, H.4
Liu, Y.5
Peng, H.6
Wu, J.7
Fan, J.8
-
68
-
-
76149146426
-
Determination of penetratin secondary structure in live cells with Raman microscopy
-
1:CAS:528:DC%2BD1MXhs1alurfK 2818876 20041639
-
Ye J, Fox SA, Cudic M, Rezler EM, Lauer JL, Fields GB, Terentis AC (2010) Determination of penetratin secondary structure in live cells with Raman microscopy. J Am Chem Soc 132(3):980-988
-
(2010)
J Am Chem Soc
, vol.132
, Issue.3
, pp. 980-988
-
-
Ye, J.1
Fox, S.A.2
Cudic, M.3
Rezler, E.M.4
Lauer, J.L.5
Fields, G.B.6
Terentis, A.C.7
-
69
-
-
52249109156
-
Gene selection algorithm by combining reliefF and mRMR
-
Zhang Y, Ding C, Li T (2008) Gene selection algorithm by combining reliefF and mRMR. BMC Genom 9(Suppl 2):S27
-
(2008)
BMC Genom
, vol.9
, pp. 27
-
-
Zhang, Y.1
Ding, C.2
Li, T.3
-
70
-
-
33646065351
-
Predicting protease types by hybridizing gene ontology and pseudo amino acid composition
-
1:CAS:528:DC%2BD28XksFaitb8%3D
-
Zhou GP, Cai YD (2006) Predicting protease types by hybridizing gene ontology and pseudo amino acid composition. Proteins Struct Funct Bioinf 63(3):681-684
-
(2006)
Proteins Struct Funct Bioinf
, vol.63
, Issue.3
, pp. 681-684
-
-
Zhou, G.P.1
Cai, Y.D.2
-
71
-
-
78650099168
-
Supersecondary structure prediction using Chou's pseudo amino acid composition
-
1:CAS:528:DC%2BC3cXhsFaru7zK 20652881
-
Zou D, He Z, He J, Xia Y (2011) Supersecondary structure prediction using Chou's pseudo amino acid composition. J Comput Chem 32(2):271-278
-
(2011)
J Comput Chem
, vol.32
, Issue.2
, pp. 271-278
-
-
Zou, D.1
He, Z.2
He, J.3
Xia, Y.4
|