-
2
-
-
84865681782
-
The malaria parasite Plasmodium vivax exhibits greater genetic diversity than Plasmodium falciparum
-
Neafsey, D.E. et al. The malaria parasite Plasmodium vivax exhibits greater genetic diversity than Plasmodium falciparum. Nat. Genet. 44, 1046-1050 (2012)
-
(2012)
Nat. Genet
, vol.44
, pp. 1046-1050
-
-
Neafsey, D.E.1
-
3
-
-
0037728535
-
Speculations on the origins of Plasmodium vivax malaria
-
Carter, R. Speculations on the origins of Plasmodium vivax malaria. Trends Parasitol. 19, 214-219 (2003)
-
(2003)
Trends Parasitol
, vol.19
, pp. 214-219
-
-
Carter, R.1
-
4
-
-
80051492349
-
Hybrid selection for sequencing pathogen genomes from clinical samples
-
Melnikov, A. et al. Hybrid selection for sequencing pathogen genomes from clinical samples. Genome Biol. 12, R73 (2011)
-
(2011)
Genome Biol
, vol.12
, pp. R73
-
-
Melnikov, A.1
-
5
-
-
84965086957
-
Population genetics, evolutionary genomics, and genome-wide studies of malaria: A view across the International Centers of Excellence for Malaria Research
-
Carlton, J.M. et al. Population genetics, evolutionary genomics, and genome-wide studies of malaria: a view across the International Centers of Excellence for Malaria Research. Am. J. Trop. Med. Hyg. 93 (suppl.), 87-98 (2015)
-
(2015)
Am. J. Trop. Med. Hyg
, vol.93
, pp. 87-98
-
-
Carlton, J.M.1
-
6
-
-
53649104458
-
Comparative genomics of the neglected human malaria parasite Plasmodium vivax
-
Carlton, J.M. et al. Comparative genomics of the neglected human malaria parasite Plasmodium vivax. Nature 455, 757-763 (2008)
-
(2008)
Nature
, vol.455
, pp. 757-763
-
-
Carlton, J.M.1
-
7
-
-
84934767035
-
Plasmodium vivax diversity and population structure across four continents
-
Koepfli, C. et al. Plasmodium vivax diversity and population structure across four continents. PLoS Negl. Trop. Dis. 9, e0003872 (2015)
-
(2015)
PLoS Negl. Trop. Dis
, vol.9
, pp. e0003872
-
-
Koepfli, C.1
-
8
-
-
84928262274
-
African origin of the malaria parasite Plasmodium vivax
-
Liu, W. et al. African origin of the malaria parasite Plasmodium vivax. Nat. Commun. 5, 3346 (2014)
-
(2014)
Nat. Commun
, vol.5
, pp. 3346
-
-
Liu, W.1
-
9
-
-
83355170725
-
The origins of African Plasmodium vivax; Insights from mitochondrial genome sequencing
-
Culleton, R. et al. The origins of African Plasmodium vivax; insights from mitochondrial genome sequencing. PLoS One 6, e29137 (2011)
-
(2011)
PLoS One
, vol.6
, pp. e29137
-
-
Culleton, R.1
-
10
-
-
84902286673
-
Using mitochondrial genome sequences to track the origin of imported Plasmodium vivax infections diagnosed in the United States
-
Rodrigues, P.T. et al. Using mitochondrial genome sequences to track the origin of imported Plasmodium vivax infections diagnosed in the United States. Am. J. Trop. Med. Hyg. 90, 1102-1108 (2014)
-
(2014)
Am. J. Trop. Med. Hyg
, vol.90
, pp. 1102-1108
-
-
Rodrigues, P.T.1
-
11
-
-
84928785540
-
Development of a single nucleotide polymorphism barcode to genotype Plasmodium vivax infections
-
Baniecki, M.L. et al. Development of a single nucleotide polymorphism barcode to genotype Plasmodium vivax infections. PLoS Negl. Trop. Dis. 9, e0003539 (2015)
-
(2015)
PLoS Negl. Trop. Dis
, vol.9
, pp. e0003539
-
-
Baniecki, M.L.1
-
12
-
-
84881192049
-
The evolutionary history of Plasmodium vivax as inferred from mitochondrial genomes: Parasite genetic diversity in the Americas
-
Taylor, J.E. et al. The evolutionary history of Plasmodium vivax as inferred from mitochondrial genomes: parasite genetic diversity in the Americas. Mol. Biol. Evol. 30, 2050-2064 (2013)
-
(2013)
Mol. Biol. Evol
, vol.30
, pp. 2050-2064
-
-
Taylor, J.E.1
-
13
-
-
0017077503
-
The resistance factor to Plasmodium vivax in blacks the Duffy-blood-group genotype, FyFy
-
Miller, L.H., Mason, S.J., Clyde, D.F. &McGinniss, M.H. The resistance factor to Plasmodium vivax in blacks. The Duffy-blood-group genotype, FyFy. N. Engl. J. Med. 295, 302-304 (1976)
-
(1976)
N. Engl. J. Med
, vol.295
, pp. 302-304
-
-
Miller, L.H.1
Mason, S.J.2
Clyde, D.F.3
McGinniss, M.H.4
-
14
-
-
70349472875
-
Reconstructing Indian population history
-
Reich, D., Thangaraj, K., Patterson, N., Price, A.L. &Singh, L. Reconstructing Indian population history. Nature 461, 489-494 (2009)
-
(2009)
Nature
, vol.461
, pp. 489-494
-
-
Reich, D.1
Thangaraj, K.2
Patterson, N.3
Price, A.L.4
Singh, L.5
-
15
-
-
77950533196
-
Plasmodium vivax clinical malaria is commonly observed in Duffy-negative Malagasy people
-
Ménard, D. et al. Plasmodium vivax clinical malaria is commonly observed in Duffy-negative Malagasy people. Proc. Natl. Acad. Sci. USA 107, 5967-5971 (2010)
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 5967-5971
-
-
Ménard, D.1
-
16
-
-
84901932009
-
The origin and diversification of the merozoite surface protein 3 (msp3) multi-gene family in Plasmodium vivax and related parasites
-
Rice, B.L. et al. The origin and diversification of the merozoite surface protein 3 (msp3) multi-gene family in Plasmodium vivax and related parasites. Mol. Phylogenet. Evol. 78, 172-184 (2014)
-
(2014)
Mol. Phylogenet. Evol
, vol.78
, pp. 172-184
-
-
Rice, B.L.1
-
17
-
-
34547667334
-
Phylogeny and evolution of the SERA multigene family in the genus Plasmodium
-
Arisue, N., Hirai, M., Arai, M., Matsuoka, H. &Horii, T. Phylogeny and evolution of the SERA multigene family in the genus Plasmodium. J. Mol. Evol. 65, 82-91 (2007)
-
(2007)
J. Mol. Evol
, vol.65
, pp. 82-91
-
-
Arisue, N.1
Hirai, M.2
Arai, M.3
Matsuoka, H.4
Horii, T.5
-
18
-
-
84865683097
-
Plasmodium cynomolgi genome sequences provide insight into Plasmodium vivax and the monkey malaria clade
-
Tachibana, S. et al. Plasmodium cynomolgi genome sequences provide insight into Plasmodium vivax and the monkey malaria clade. Nat. Genet. 44, 1051-1055 (2012)
-
(2012)
Nat. Genet
, vol.44
, pp. 1051-1055
-
-
Tachibana, S.1
-
19
-
-
84878010854
-
The human malaria parasite Pfs47 gene mediates evasion of the mosquito immune system
-
Molina-Cruz, A. et al. The human malaria parasite Pfs47 gene mediates evasion of the mosquito immune system. Science 340, 984-987 (2013)
-
(2013)
Science
, vol.340
, pp. 984-987
-
-
Molina-Cruz, A.1
-
20
-
-
84906765902
-
The remarkable journey of adaptation of the Plasmodium falciparum malaria parasite to New World anopheline mosquitoes
-
Molina-Cruz, A. &Barillas-Mury, C. The remarkable journey of adaptation of the Plasmodium falciparum malaria parasite to New World anopheline mosquitoes. Mem. Inst. Oswaldo Cruz 109, 662-667 (2014)
-
(2014)
Mem. Inst. Oswaldo Cruz
, vol.109
, pp. 662-667
-
-
Molina-Cruz, A.1
Barillas-Mury, C.2
-
21
-
-
77952065212
-
Complete mtDNA genomes of Anopheles darlingi and an approach to anopheline divergence time
-
Moreno, M. et al. Complete mtDNA genomes of Anopheles darlingi and an approach to anopheline divergence time. Malar. J. 9, 127 (2010)
-
(2010)
Malar. J
, vol.9
, pp. 127
-
-
Moreno, M.1
-
22
-
-
35349030755
-
Evidence of non-neutral polymorphism in Plasmodium falciparum gamete surface protein genes Pfs47 and Pfs48/45
-
Anthony, T.G., Polley, S.D., Vogler, A.P. &Conway, D.J. Evidence of non-neutral polymorphism in Plasmodium falciparum gamete surface protein genes Pfs47 and Pfs48/45. Mol. Biochem. Parasitol. 156, 117-123 (2007)
-
(2007)
Mol. Biochem. Parasitol
, vol.156
, pp. 117-123
-
-
Anthony, T.G.1
Polley, S.D.2
Vogler, A.P.3
Conway, D.J.4
-
23
-
-
22544441601
-
How malaria has affected the human genome and what human genetics can teach us about malaria
-
Kwiatkowski, D.P. How malaria has affected the human genome and what human genetics can teach us about malaria. Am. J. Hum. Genet. 77, 171-192 (2005)
-
(2005)
Am. J. Hum. Genet
, vol.77
, pp. 171-192
-
-
Kwiatkowski, D.P.1
-
24
-
-
84866360184
-
A long neglected world malaria map: Plasmodium vivax endemicity in 2010
-
Gething, P.W. et al. A long neglected world malaria map: Plasmodium vivax endemicity in 2010. PLoS Negl. Trop. Dis. 6, e1814 (2012)
-
(2012)
PLoS Negl. Trop. Dis
, vol.6
, pp. e1814
-
-
Gething, P.W.1
-
25
-
-
51449101457
-
TRAP-like protein of Plasmodium sporozoites: Linking gliding motility to host-cell traversal
-
Lacroix, C. &Ménard, R. TRAP-like protein of Plasmodium sporozoites: linking gliding motility to host-cell traversal. Trends Parasitol. 24, 431-434 (2008)
-
(2008)
Trends Parasitol
, vol.24
, pp. 431-434
-
-
Lacroix, C.1
Ménard, R.2
-
26
-
-
34248634605
-
Plasmodium cysteine repeat modular proteins 1-4: Complex proteins with roles throughout the malaria parasite life cycle
-
Thompson, J. et al. Plasmodium cysteine repeat modular proteins 1-4: complex proteins with roles throughout the malaria parasite life cycle. Cell. Microbiol. 9, 1466-1480 (2007)
-
(2007)
Cell. Microbiol
, vol.9
, pp. 1466-1480
-
-
Thompson, J.1
-
27
-
-
84943522453
-
Genome-scale protein microarray comparison of human antibody responses in Plasmodium vivax relapse and reinfection
-
Chuquiyauri, R. et al. Genome-scale protein microarray comparison of human antibody responses in Plasmodium vivax relapse and reinfection. Am. J. Trop. Med. Hyg. 93, 801-809 (2015)
-
(2015)
Am. J. Trop. Med. Hyg
, vol.93
, pp. 801-809
-
-
Chuquiyauri, R.1
-
28
-
-
84860355005
-
Evidence of purifying selection on merozoite surface protein 8 (MSP8) and 10 (MSP10) in Plasmodium spp
-
Pacheco, M.A. et al. Evidence of purifying selection on merozoite surface protein 8 (MSP8) and 10 (MSP10) in Plasmodium spp. Infect. Genet. Evol. 12, 978-986 (2012)
-
(2012)
Infect. Genet. Evol
, vol.12
, pp. 978-986
-
-
Pacheco, M.A.1
-
29
-
-
84928814749
-
A molecular mechanism of artemisinin resistance in Plasmodium falciparum malaria
-
Mbengue, A. et al. A molecular mechanism of artemisinin resistance in Plasmodium falciparum malaria. Nature 520, 683-687 (2015)
-
(2015)
Nature
, vol.520
, pp. 683-687
-
-
Mbengue, A.1
-
30
-
-
84949579803
-
Multiple origins of mutations in the mdr1 gene-A putative marker of chloroquine resistance in P vivax
-
Schousboe, M.L. et al. Multiple origins of mutations in the mdr1 gene-A putative marker of chloroquine resistance in P. vivax. PLoS Negl. Trop. Dis. 9, e0004196 (2015)
-
(2015)
PLoS Negl. Trop. Dis
, vol.9
, pp. e0004196
-
-
Schousboe, M.L.1
-
31
-
-
0037020024
-
Chloroquine resistance in Plasmodium falciparum malaria parasites conferred by pfcrt mutations
-
Sidhu, A.B., Verdier-Pinard, D. &Fidock, D.A. Chloroquine resistance in Plasmodium falciparum malaria parasites conferred by pfcrt mutations. Science 298, 210-213 (2002)
-
(2002)
Science
, vol.298
, pp. 210-213
-
-
Sidhu, A.B.1
Verdier-Pinard, D.2
Fidock, D.A.3
-
32
-
-
84892372929
-
A molecular marker of artemisinin-resistant Plasmodium falciparum malaria
-
Ariey, F. et al. A molecular marker of artemisinin-resistant Plasmodium falciparum malaria. Nature 505, 50-55 (2014)
-
(2014)
Nature
, vol.505
, pp. 50-55
-
-
Ariey, F.1
-
33
-
-
0033016077
-
Semi-nested, multiplex polymerase chain reaction for detection of human malaria parasites and evidence of Plasmodium vivax infection in Equatorial Guinea
-
Rubio, J.M. et al. Semi-nested, multiplex polymerase chain reaction for detection of human malaria parasites and evidence of Plasmodium vivax infection in Equatorial Guinea. Am. J. Trop. Med. Hyg. 60, 183-187 (1999)
-
(1999)
Am. J. Trop. Med. Hyg
, vol.60
, pp. 183-187
-
-
Rubio, J.M.1
-
34
-
-
67649884743
-
Fast and accurate short read alignment with Burrows-Wheeler transform
-
Li, H. &Durbin, R. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25, 1754-1760 (2009)
-
(2009)
Bioinformatics
, vol.25
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
-
35
-
-
0029001881
-
Disruption of a GATA motif in the Duffy gene promoter abolishes erythroid gene expression in Duffy-negative individuals
-
Tournamille, C., Colin, Y., Cartron, J.P. &Le Van Kim, C. Disruption of a GATA motif in the Duffy gene promoter abolishes erythroid gene expression in Duffy-negative individuals. Nat. Genet. 10, 224-228 (1995)
-
(1995)
Nat. Genet
, vol.10
, pp. 224-228
-
-
Tournamille, C.1
Colin, Y.2
Cartron, J.P.3
Le Van Kim, C.4
-
36
-
-
70350694443
-
Pindel: A pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads
-
Ye, K., Schulz, M.H., Long, Q., Apweiler, R. &Ning, Z. Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads. Bioinformatics 25, 2865-2871 (2009)
-
(2009)
Bioinformatics
, vol.25
, pp. 2865-2871
-
-
Ye, K.1
Schulz, M.H.2
Long, Q.3
Apweiler, R.4
Ning, Z.5
-
37
-
-
84888217574
-
Whole genome sequencing of field isolates reveals a common duplication of the Duffy binding protein gene in Malagasy Plasmodium vivax strains
-
Menard, D. et al. Whole genome sequencing of field isolates reveals a common duplication of the Duffy binding protein gene in Malagasy Plasmodium vivax strains. PLoS Negl. Trop. Dis. 7, e2489 (2013)
-
(2013)
PLoS Negl. Trop. Dis
, vol.7
, pp. e2489
-
-
Menard, D.1
-
39
-
-
84899548242
-
Automated reconstruction of whole-genome phylogenies from short-sequence reads
-
Bertels, F., Silander, O.K., Pachkov, M., Rainey, P.B. &van Nimwegen, E. Automated reconstruction of whole-genome phylogenies from short-sequence reads. Mol. Biol. Evol. 31, 1077-1088 (2014)
-
(2014)
Mol. Biol. Evol
, vol.31
, pp. 1077-1088
-
-
Bertels, F.1
Silander, O.K.2
Pachkov, M.3
Rainey, P.B.4
Van Nimwegen, E.5
-
40
-
-
77956295988
-
The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
-
McKenna, A. et al. The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. Genome Res. 20, 1297-1303 (2010)
-
(2010)
Genome Res
, vol.20
, pp. 1297-1303
-
-
McKenna, A.1
-
41
-
-
84896009017
-
From FastQ data to high confidence variant calls: The Genome Analysis Toolkit best practices pipeline
-
Van der Auwera, G.A. et al. From FastQ data to high confidence variant calls: the Genome Analysis Toolkit best practices pipeline. Curr. Protoc. Bioinformatics 43, 11.10.1-11.10.33 (2013)
-
(2013)
Curr. Protoc. Bioinformatics
, vol.43
, pp. 11101-111033
-
-
Van Der Auwera, G.A.1
-
42
-
-
84870820953
-
A high-performance computing toolset for relatedness and principal component analysis of SNP data
-
Zheng, X. et al. A high-performance computing toolset for relatedness and principal component analysis of SNP data. Bioinformatics 28, 3326-3328 (2012)
-
(2012)
Bioinformatics
, vol.28
, pp. 3326-3328
-
-
Zheng, X.1
-
43
-
-
84899553363
-
RAxML version 8: A tool for phylogenetic analysis and post-analysis of large phylogenies
-
Stamatakis, A. RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics 30, 1312-1313 (2014)
-
(2014)
Bioinformatics
, vol.30
, pp. 1312-1313
-
-
Stamatakis, A.1
-
44
-
-
69749099417
-
Fast model-based estimation of ancestry in unrelated individuals
-
Alexander, D.H., Novembre, J. &Lange, K. Fast model-based estimation of ancestry in unrelated individuals. Genome Res. 19, 1655-1664 (2009)
-
(2009)
Genome Res
, vol.19
, pp. 1655-1664
-
-
Alexander, D.H.1
Novembre, J.2
Lange, K.3
-
45
-
-
79960405019
-
The variant call format and VCFtools
-
Danecek, P. et al. The variant call format and VCFtools. Bioinformatics 27, 2156-2158 (2011)
-
(2011)
Bioinformatics
, vol.27
, pp. 2156-2158
-
-
Danecek, P.1
-
46
-
-
84930618454
-
Modeling malaria genomics reveals transmission decline and rebound in Senegal
-
Daniels, R.F. et al. Modeling malaria genomics reveals transmission decline and rebound in Senegal. Proc. Natl. Acad. Sci. USA 112, 7067-7072 (2015)
-
(2015)
Proc. Natl. Acad. Sci. USA
, vol.112
, pp. 7067-7072
-
-
Daniels, R.F.1
-
47
-
-
0026428610
-
Adaptive protein evolution at the Adh locus in Drosophila
-
McDonald, J.H. &Kreitman, M. Adaptive protein evolution at the Adh locus in Drosophila. Nature 351, 652-654 (1991)
-
(1991)
Nature
, vol.351
, pp. 652-654
-
-
McDonald, J.H.1
Kreitman, M.2
-
48
-
-
3042666256
-
MUSCLE: Multiple sequence alignment with high accuracy and high throughput
-
Edgar, R.C. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32, 1792-1797 (2004)
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 1792-1797
-
-
Edgar, R.C.1
-
49
-
-
0042424602
-
Statistical significance for genomewide studies
-
Storey, J.D. &Tibshirani, R. Statistical significance for genomewide studies. Proc. Natl. Acad. Sci. USA 100, 9440-9445 (2003)
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 9440-9445
-
-
Storey, J.D.1
Tibshirani, R.2
-
50
-
-
0037186564
-
Adaptive protein evolution in Drosophila
-
Smith, N.G. &Eyre-Walker, A. Adaptive protein evolution in Drosophila. Nature 415, 1022-1024 (2002)
-
(2002)
Nature
, vol.415
, pp. 1022-1024
-
-
Smith, N.G.1
Eyre-Walker, A.2
|