Whole Genome Sequencing of Field Isolates Reveals a Common Duplication of the Duffy Binding Protein Gene in Malagasy Plasmodium vivax Strains

PLoS Neglected Tropical Diseases

Volumn 7, Issue 11, 2013, Pages

  Menard, Didier ^a   Chan, Ernest R ^b   Benedet, Christophe ^a   Ratsimbasoa, Arsène ^c   Kim, Saorin ^a   Chim, Pheaktra ^a   Do, Catherine ^a   Witkowski, Benoit ^a   Durand, Remy ^d   Thellier, Marc ^e   Severini, Carlo ^f   Legrand, Eric ^g   Musset, Lise ^g   Nour, Bakri Y M ^h   Mercereau Puijalon, Odile ⁱ   Serre, David ^b   Zimmerman, Peter A ^j  

^a INSTITUT PASTEUR DU CAMBODGE   (Cambodia)

^b LERNER RESEARCH INSTITUTE   (United States)

^c Direction de la lute contre les maladies infectieuses   (Madagascar)

^d AVICENNE HOSPITAL   (France)

^e PITIÉ SALPÊTRIÈRE HOSPITAL   (France)

^f ISTITUTO SUPERIORE DI SANITÀ   (Italy)

^g INSTITUT PASTEUR DE LA GUYANE   (French Guiana)

^h UNIVERSITY OF GEZIRA   (Sudan)

ⁱ INSTITUT PASTEUR   (France)

^j CASE WESTERN RESERVE UNIVERSITY SCHOOL OF MEDICINE   (United States)

more..

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CHROMOSOME 6; CHROMOSOME INVERSION; CHROMOSOME REARRANGEMENT; CONTROLLED STUDY; DNA SEQUENCE; DUFFY BINDING PROTEIN GENE; ERYTHROCYTE; GENE; GENE DELETION; GENE DUPLICATION; GENETIC ASSOCIATION; GENOTYPE; HAPLORHINI; HUMAN; MADAGASCAR; MAJOR CLINICAL STUDY; MOLECULAR GENETICS; NONHUMAN; PLASMODIUM VIVAX; PLASMODIUM VIVAX MALARIA; POLYMERASE CHAIN REACTION; SINGLE NUCLEOTIDE POLYMORPHISM; WHOLE GENOME SEQUENCING;

ANTIGENS, PROTOZOAN; DNA, PROTOZOAN; GENE DUPLICATION; GENOME, PROTOZOAN; HUMANS; MADAGASCAR; MALARIA, VIVAX; MAURITANIA; MOLECULAR SEQUENCE DATA; PLASMODIUM VIVAX; PROTOZOAN PROTEINS; RECEPTORS, CELL SURFACE; SEQUENCE ANALYSIS, DNA;

EID: 84888217574     PISSN: 19352727     EISSN: 19352735     Source Type: Journal    
DOI: 10.1371/journal.pntd.0002489     Document Type: Article

References (29)

1. Aikawa M, Miller LH, Johnson J, Rabbege J, (1978) Erythrocyte entry by malarial parasites. A moving junction between erythrocyte and parasite. J Cell Biol 77: 72-82.
2. Miller LH, Mason SJ, Clyde DF, McGinniss MH, (1976) The resistance factor to Plasmodium vivax in blacks. The Duffy-blood- group genotype, FyFy. N Engl J Med 295: 302-304.
3. Miller LH, Mason SJ, Dvorak JA, McGinniss MH, Rothman IK, (1975) Erythrocyte receptors for (Plasmodium knowlesi) malaria: Duffy blood group determinants. Science 189: 561-563.
4. Adams JH, Hudson DE, Torii M, Ward GE, Wellems TE, et al. (1990) The Duffy receptor family of Plasmodium knowlesi is located within the micronemes of invasive malaria merozoites. Cell 63: 141-153.
5. Miller LH, Aikawa M, Johnson JG, Shiroishi T, (1979) Interaction between cytochalasin B-treated malarial parasites and erythrocytes. Attachment and junction formation. J Exp Med 149: 172-184.
6. Singh AP, Ozwara H, Kocken CH, Puri SK, Thomas AW, et al. (2005) Targeted deletion of Plasmodium knowlesi Duffy binding protein confirms its role in junction formation during invasion. Mol Microbiol 55: 1925-1934.
7. Zimmerman PA, Ferreira MU, Howes RE, Mercereau-Puijalon O (2013) Red blood cell polymorphism and susceptibility to Plasmodium vivax. In: Hay SI, Price RN, Baird JK, editors. Advances in Parasitology. London: Elsevier. pp. 27-76.
8. Menard D, Barnadas C, Bouchier C, Henry-Halldin C, Gray LR, et al. (2010) Plasmodium vivax clinical malaria is commonly observed in Duffy-negative Malagasy people. Proc Natl Acad Sci U S A 107: 5967-5971.
9. Cavasini CE, de Mattos LC, Couto AA, Couto VS, Gollino Y, et al. (2007) Duffy blood group gene polymorphisms among malaria vivax patients in four areas of the Brazilian Amazon region. Malar J 6: 167.
10. Ryan JR, Stoute JA, Amon J, Dunton RF, Mtalib R, et al. (2006) Evidence for transmission of Plasmodium vivax among a duffy antigen negative population in Western Kenya. Am J Trop Med Hyg 75: 575-581.
11. Mendes C, Dias F, Figueiredo J, Mora VG, Cano J, et al. (2011) Duffy negative antigen is no longer a barrier to Plasmodium vivax-molecular evidences from the African West Coast (Angola and Equatorial Guinea). PLoS Negl Trop Dis 5: e1192.
12. Wurtz N, Mint Lekweiry K, Bogreau H, Pradines B, Rogier C, et al. (2011) Vivax malaria in Mauritania includes infection of a Duffy-negative individual. Malar J 10: 336.
13. Howes RE, Patil AP, Piel FB, Nyangiri OA, Kabaria CW, et al. (2011) The global distribution of the Duffy blood group. Nat Commun 2: 266.
14. Chan ER, Menard D, David PH, Ratsimbasoa A, Kim S, et al. (2012) Whole genome sequencing of field isolates provides robust characterization of genetic diversity in Plasmodium vivax. PLoS Negl Trop Dis 6: e1811.
15. Carlton JM, Adams JH, Silva JC, Bidwell SL, Lorenzi H, et al. (2008) Comparative genomics of the neglected human malaria parasite Plasmodium vivax. Nature 455: 757-763.
16. Langmead B, Salzberg SL, (2012) Fast gapped-read alignment with Bowtie 2. Nat Methods 9: 357-359.
17. Neafsey DE, Galinsky K, Jiang RH, Young L, Sykes SM, et al. (2012) The malaria parasite Plasmodium vivax exhibits greater genetic diversity than Plasmodium falciparum. Nat Genet 44: 1046-1050.
18. Lander ES, Linton LM, Birren B, Nusbaum C, Zody MC, et al. (2001) Initial sequencing and analysis of the human genome. Nature 409: 860-921.
19. Dharia NV, Bright AT, Westenberger SJ, Barnes SW, Batalov S, et al. (2010) Whole-genome sequencing and microarray analysis of ex vivo Plasmodium vivax reveal selective pressure on putative drug resistance genes. Proc Natl Acad Sci U S A 107: 20045-20050.
20. Cheeseman IH, Gomez-Escobar N, Carret CK, Ivens A, Stewart LB, et al. (2009) Gene copy number variation throughout the Plasmodium falciparum genome. BMC Genomics 10: 353.
21. Robinson T, Campino SG, Auburn S, Assefa SA, Polley SD, et al. (2011) Drug-resistant genotypes and multi-clonality in Plasmodium falciparum analysed by direct genome sequencing from peripheral blood of malaria patients. PLoS One 6: e23204.
22. Price RN, Uhlemann AC, Brockman A, McGready R, Ashley E, et al. (2004) Mefloquine resistance in Plasmodium falciparum and increased pfmdr1 gene copy number. Lancet 364: 438-447.
23. Gething PW, Elyazar IR, Moyes CL, Smith DL, Battle KE, et al. (2012) A long neglected world malaria map: Plasmodium vivax endemicity in 2010. PLoS Negl Trop Dis 6: e1814.
24. Albuquerque SR, Cavalcante Fde O, Sanguino EC, Tezza L, Chacon F, et al. (2010) FY polymorphisms and vivax malaria in inhabitants of Amazonas State, Brazil. Parasitol Res 106: 1049-1053.
25. Kasehagen LJ, Mueller I, Kiniboro B, Bockarie MJ, Reeder JC, et al. (2007) Reduced Plasmodium vivax Erythrocyte Infection in PNG Duffy-Negative Heterozygotes. PLoS ONE 2: e336.
26. Sousa TN, Sanchez BA, Ceravolo IP, Carvalho LH, Brito CF, (2007) Real-time multiplex allele-specific polymerase chain reaction for genotyping of the Duffy antigen, the Plasmodium vivax invasion receptor. Vox Sang 92: 373-380.
27. Chittoria A, Mohanty S, Jaiswal YK, Das A, (2012) Natural selection mediated association of the Duffy (FY) gene polymorphisms with Plasmodium vivax malaria in India. PLoS One 7: e45219.
28. King CL, Adams JH, Xianli J, Grimberg BT, McHenry AM, et al. (2011) Fy(a)/Fy(b) antigen polymorphism in human erythrocyte Duffy antigen affects susceptibility to Plasmodium vivax malaria. Proc Natl Acad Sci U S A 108: 20113-20118.
29. Melnikov A, Galinsky K, Rogov P, Fennell T, Van Tyne D, et al. (2011) Hybrid selection for sequencing pathogen genomes from clinical samples. Genome Biol 12: R73.