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Volumn 11, Issue 7, 2016, Pages 1309-1325

Correction to: A reconstituted cell-free assay for the evaluation of the intrinsic activity of purified human ribosomes (Nature Protocols, (2016), 11, 7, (1309-1325), 10.1038/nprot.2016.072);A reconstituted cell-free assay for the evaluation of the intrinsic activity of purified human ribosomes

Author keywords

[No Author keywords available]

Indexed keywords

MESSENGER RNA; RIBOSOME RNA;

EID: 84975842577     PISSN: 17542189     EISSN: 17502799     Source Type: Journal    
DOI: 10.1038/s41596-024-00961-9     Document Type: Erratum
Times cited : (27)

References (41)
  • 2
    • 84861418314 scopus 로고    scopus 로고
    • Specialized ribosomes: A new frontier in gene regulation and organismal biology
    • Xue, S. & Barna, M. Specialized ribosomes: A new frontier in gene regulation and organismal biology. Nat. Rev. Mol. Cell Biol. 13, 355-369 (2012).
    • (2012) Nat. Rev. Mol. Cell Biol , vol.13 , pp. 355-369
    • Xue, S.1    Barna, M.2
  • 3
    • 77951431225 scopus 로고    scopus 로고
    • Ribosomopathies: Human disorders of ribosome dysfunction
    • Narla, A. & Ebert, B.L. Ribosomopathies: human disorders of ribosome dysfunction. Blood 115, 3196-3205 (2010).
    • (2010) Blood , vol.115 , pp. 3196-3205
    • Narla, A.1    Ebert, B.L.2
  • 4
    • 84940118774 scopus 로고    scopus 로고
    • Human ribosomes from cells with reduced dyskerin levels are intrinsically altered in translation
    • Penzo, M. et al. Human ribosomes from cells with reduced dyskerin levels are intrinsically altered in translation. FASEB J. 29, 3472-3482 (2015).
    • (2015) FASEB J , vol.29 , pp. 3472-3482
    • Penzo, M.1
  • 6
    • 0000409586 scopus 로고
    • Synthesis of hemoglobin in a cell-free system. I. Properties of the complete system
    • Allen, E.H. & Schweet, R.S. Synthesis of hemoglobin in a cell-free system. I. Properties of the complete system. J. Biol. Chem. 237, 760-777 (1962).
    • (1962) J. Biol. Chem , vol.237 , pp. 760-777
    • Allen, E.H.1    Schweet, R.S.2
  • 7
    • 0016271551 scopus 로고
    • Effect of development on the translation of messenger RNA in Artemia salina embryos
    • Sierra, J.M., Meier, D. & Ochoa, S. Effect of development on the translation of messenger RNA in Artemia salina embryos. Proc. Natl. Acad. Sci. USA 71, 2693-2697 (1974).
    • (1974) Proc. Natl. Acad. Sci. USA , vol.71 , pp. 2693-2697
    • Sierra, J.M.1    Meier, D.2    Ochoa, S.3
  • 8
    • 0015399139 scopus 로고
    • Met-TRNA hydrolase from reticulocytes specific for Met-TRNA f Met on 40S ribosomal subunits
    • Morrisey, J. & Hardesty, B. Met-TRNA hydrolase from reticulocytes specific for Met-TRNA f Met on 40S ribosomal subunits. Arch. Biochem. Biophys. 152, 385-397 (1972).
    • (1972) Arch. Biochem. Biophys , vol.152 , pp. 385-397
    • Morrisey, J.1    Hardesty, B.2
  • 9
    • 0346668251 scopus 로고    scopus 로고
    • Effects of osmolarity, ions and compatible osmolytes on cell-free protein synthesis
    • Brigotti, M. et al. Effects of osmolarity, ions and compatible osmolytes on cell-free protein synthesis. Biochem. J. 369, 369-374 (2003).
    • (2003) Biochem. J , vol.369 , pp. 369-374
    • Brigotti, M.1
  • 11
    • 0024394362 scopus 로고
    • Context effects and inefficient initiation at non-AUG codons in eucaryotic cell-free translation systems
    • Kozak, M. Context effects and inefficient initiation at non-AUG codons in eucaryotic cell-free translation systems. Mol. Cell. Biol. 9, 5073-5080 (1989).
    • (1989) Mol. Cell. Biol , vol.9 , pp. 5073-5080
    • Kozak, M.1
  • 12
    • 0025270438 scopus 로고
    • Evaluation of the fidelity of initiation of translation in reticulocyte lysates from commercial sources
    • Kozak, M. Evaluation of the fidelity of initiation of translation in reticulocyte lysates from commercial sources. Nucleic Acids Res. 18, 2828 (1990).
    • (1990) Nucleic Acids Res , vol.18 , pp. 2828
    • Kozak, M.1
  • 13
    • 0034644749 scopus 로고    scopus 로고
    • Cap-Poly(A) synergy in mammalian cell-free extracts. Investigation of the requirements for poly(A)-mediated stimulation of translation initiation
    • Michel, Y.M., Poncet, D., Piron, M., Kean, K.M. & Borman, A.M. Cap-Poly(A) synergy in mammalian cell-free extracts. Investigation of the requirements for poly(A)-mediated stimulation of translation initiation. J. Biol. Chem. 275, 32268-32276 (2000).
    • (2000) J. Biol. Chem , vol.275 , pp. 32268-32276
    • Michel, Y.M.1    Poncet, D.2    Piron, M.3    Kean, K.M.4    Borman, A.M.5
  • 14
    • 35548996750 scopus 로고    scopus 로고
    • Back to basics: The untreated rabbit reticulocyte lysate as a competitive system to recapitulate cap/poly(A) synergy and the selective advantage of IRES-driven translation
    • Soto Rifo, R., Ricci, E.P., Décimo, D., Moncorgé, O. & Ohlmann, T. Back to basics: The untreated rabbit reticulocyte lysate as a competitive system to recapitulate cap/poly(A) synergy and the selective advantage of IRES-driven translation. Nucleic Acids Res. 35, e121 (2007).
    • (2007) Nucleic Acids Res , vol.35 , pp. e121
    • Soto Rifo, R.1    Ricci, E.P.2    Décimo, D.3    Moncorgé, O.4    Ohlmann, T.5
  • 15
    • 84932094074 scopus 로고    scopus 로고
    • Vitro translation in a hybrid cell free lysate with exogenous cellular ribosomes
    • Panthu, B., Decimo, D., Balvay, L. & Ohlmann, T. In vitro translation in a hybrid cell free lysate with exogenous cellular ribosomes. Biochem. J. 398, 387-398 (2015).
    • (2015) Biochem. J , vol.398 , pp. 387-398
    • Panthu, B.1    Decimo, D.2    Balvay, L.3    Ohlmann, T.4
  • 16
    • 0346668251 scopus 로고    scopus 로고
    • Effects of osmolarity, ions and compatible osmolytes on cell-free protein synthesis
    • Brigotti, M. et al. Effects of osmolarity, ions and compatible osmolytes on cell-free protein synthesis. Biochem. J. 369, 369-374 (2003).
    • (2003) Biochem. J , vol.369 , pp. 369-374
    • Brigotti, M.1
  • 17
    • 33646543044 scopus 로고    scopus 로고
    • Impaired control of IRES-mediated translation in X-linked dyskeratosis congenita
    • Yoon, A. et al. Impaired control of IRES-mediated translation in X-linked dyskeratosis congenita. Science 312, 902-906 (2006).
    • (2006) Science , vol.312 , pp. 902-906
    • Yoon, A.1
  • 18
    • 77955044544 scopus 로고    scopus 로고
    • Loss of function of the tumor suppressor DKC1 perturbs p27 translation control and contributes to pituitary tumorigenesis
    • Bellodi, C. et al. Loss of function of the tumor suppressor DKC1 perturbs p27 translation control and contributes to pituitary tumorigenesis. Cancer Res. 70, 6026-6035 (2010).
    • (2010) Cancer Res , vol.70 , pp. 6026-6035
    • Bellodi, C.1
  • 19
    • 77953143023 scopus 로고    scopus 로고
    • Novel dyskerin-mediated mechanism of p53 inactivation through defective mRNA translation
    • Montanaro, L. et al. Novel dyskerin-mediated mechanism of p53 inactivation through defective mRNA translation. Cancer Res. 70, 4767-4777 (2010).
    • (2010) Cancer Res , vol.70 , pp. 4767-4777
    • Montanaro, L.1
  • 20
    • 84884969772 scopus 로고    scopus 로고
    • Dyskerin depletion increases VEGF mRNA internal ribosome entry site-mediated translation
    • Rocchi, L. et al. Dyskerin depletion increases VEGF mRNA internal ribosome entry site-mediated translation. Nucleic Acids Res. 41, 8308-8318 (2013).
    • (2013) Nucleic Acids Res , vol.41 , pp. 8308-8318
    • Rocchi, L.1
  • 21
    • 81355153985 scopus 로고    scopus 로고
    • RRNA pseudouridylation defects affect ribosomal ligand binding and translational fidelity from yeast to human cells
    • Jack, K. et al. rRNA pseudouridylation defects affect ribosomal ligand binding and translational fidelity from yeast to human cells. Mol. Cell 44, 660-666 (2011).
    • (2011) Mol. Cell , vol.44 , pp. 660-666
    • Jack, K.1
  • 22
    • 0021004695 scopus 로고
    • Preparation and use of nuclease-Treated rabbit reticulocyte lysates for the translation of eukaryotic messenger RNA
    • Jackson, R.J. & Hunt, T. Preparation and use of nuclease-Treated rabbit reticulocyte lysates for the translation of eukaryotic messenger RNA. Methods Enzymol. 96, 50-74 (1983).
    • (1983) Methods Enzymol , vol.96 , pp. 50-74
    • Jackson, R.J.1    Hunt, T.2
  • 23
    • 0002515165 scopus 로고    scopus 로고
    • Dual-Luciferase® reporter assay: An advanced co-reporter technology integrating firefly and Renilla luciferase assays
    • Sherf, B.A. & Al, E. Dual-Luciferase® reporter assay: An advanced co-reporter technology integrating firefly and Renilla luciferase assays. Promega Notes Mag. 57, 2-9 (1996).
    • (1996) Promega Notes Mag , vol.57 , pp. 2-9
    • Sherf, B.A.1
  • 24
    • 0026323221 scopus 로고
    • Oligopyrimidine tract at the 5′ end of mammalian ribosomal protein mRNAs is required for their translational control
    • Levy, S., Avni, D., Hariharan, N., Perry, R.P. & Meyuhas, O. Oligopyrimidine tract at the 5′ end of mammalian ribosomal protein mRNAs is required for their translational control. Proc. Natl. Acad. Sci. USA 88, 3319-3323 (1991).
    • (1991) Proc. Natl. Acad. Sci. USA , vol.88 , pp. 3319-3323
    • Levy, S.1    Avni, D.2    Hariharan, N.3    Perry, R.P.4    Meyuhas, O.5
  • 25
    • 84862777192 scopus 로고    scopus 로고
    • The translational landscape of mTOR signalling steers cancer initiation and metastasis
    • Hsieh, A.C. et al. The translational landscape of mTOR signalling steers cancer initiation and metastasis. Nature 485, 55-61 (2012).
    • (2012) Nature , vol.485 , pp. 55-61
    • Hsieh, A.C.1
  • 26
    • 84934438925 scopus 로고    scopus 로고
    • Differential requirements for eIF4E dose in normal development and cancer
    • Truitt, M.L. et al. Differential requirements for eIF4E dose in normal development and cancer. Cell 162, 59-71 (2015).
    • (2015) Cell , vol.162 , pp. 59-71
    • Truitt, M.L.1
  • 27
    • 84922482101 scopus 로고    scopus 로고
    • RNA regulons in Hox 5 UTRs confer ribosome specificity to gene regulation
    • Xue, S. et al. RNA regulons in Hox 5 UTRs confer ribosome specificity to gene regulation. Nature 517, 33-38 (2014).
    • (2014) Nature , vol.517 , pp. 33-38
    • Xue, S.1
  • 28
    • 0029758487 scopus 로고    scopus 로고
    • Molecular control of vertebrate iron metabolism: mRNA-based regulatory circuits operated by iron, nitric oxide, and oxidative stress
    • Hentze, M.W. & Köhn, L.C. Molecular control of vertebrate iron metabolism: mRNA-based regulatory circuits operated by iron, nitric oxide, and oxidative stress. Proc. Natl. Acad. Sci. USA 93, 8175-8182 (1996).
    • (1996) Proc. Natl. Acad. Sci. USA , vol.93 , pp. 8175-8182
    • Hentze, M.W.1    Köhn, L.C.2
  • 29
    • 84954555364 scopus 로고    scopus 로고
    • Cis-regulatory RNA elements that regulate specialized ribosome activity
    • Xue, S. & Barna, M. Cis-regulatory RNA elements that regulate specialized ribosome activity. RNA Biol. 12, 1083-1087 (2015).
    • (2015) RNA Biol , vol.12 , pp. 1083-1087
    • Xue, S.1    Barna, M.2
  • 30
    • 2442506941 scopus 로고    scopus 로고
    • Identification of a new antizyme mRNA +1 frameshifting stimulatory pseudoknot in a subset of diverse invertebrates and its apparent absence in intermediate species
    • Ivanov, I.P., Anderson, C.B., Gesteland, R.F. & Atkins, J.F. Identification of a new antizyme mRNA +1 frameshifting stimulatory pseudoknot in a subset of diverse invertebrates and its apparent absence in intermediate species. J. Mol. Biol. 339, 495-504 (2004).
    • (2004) J. Mol. Biol , vol.339 , pp. 495-504
    • Ivanov, I.P.1    Anderson, C.B.2    Gesteland, R.F.3    Atkins, J.F.4
  • 32
    • 84953775537 scopus 로고    scopus 로고
    • Pathways to specialized ribosomes: The Brussels lecture
    • Dinman, J.D. Pathways to specialized ribosomes: The Brussels lecture. J. Mol. Biol. 428, 2186-2194 (2016).
    • (2016) J. Mol. Biol , vol.428 , pp. 2186-2194
    • Dinman, J.D.1
  • 33
    • 84884549053 scopus 로고    scopus 로고
    • Characterization and analysis of the composition and dynamics of the mammalian riboproteome
    • Reschke, M. et al. Characterization and analysis of the composition and dynamics of the mammalian riboproteome. Cell Rep. 4, 1276-1287 (2013).
    • (2013) Cell Rep , vol.4 , pp. 1276-1287
    • Reschke, M.1
  • 34
    • 78649892938 scopus 로고    scopus 로고
    • A molecular clamp ensures allosteric coordination of peptidyltransfer and ligand binding to the ribosomal A-site
    • Meskauskas, A. & Dinman, J.D. A molecular clamp ensures allosteric coordination of peptidyltransfer and ligand binding to the ribosomal A-site. Nucleic Acids Res. 38, 7800-7813 (2010).
    • (2010) Nucleic Acids Res , vol.38 , pp. 7800-7813
    • Meskauskas, A.1    Dinman, J.D.2
  • 35
    • 72549101167 scopus 로고    scopus 로고
    • RPS25 is essential for translation initiation by the Dicistroviridae and hepatitis C viral IRESs
    • Landry, D.M., Hertz, M.I. & Thompson, S.R. RPS25 is essential for translation initiation by the Dicistroviridae and hepatitis C viral IRESs. Genes Dev. 23, 2753-2764 (2009).
    • (2009) Genes Dev , vol.23 , pp. 2753-2764
    • Landry, D.M.1    Hertz, M.I.2    Thompson, S.R.3
  • 36
    • 34347236921 scopus 로고    scopus 로고
    • Organelle isolation: Functional mitochondria from mouse liver, muscle and cultured fibroblasts
    • Frezza, C., Cipolat, S. & Scorrano, L. Organelle isolation: functional mitochondria from mouse liver, muscle and cultured fibroblasts. Nat. Protoc. 2, 287-295 (2007).
    • (2007) Nat. Protoc , vol.2 , pp. 287-295
    • Frezza, C.1    Cipolat, S.2    Scorrano, L.3
  • 37
    • 84873441267 scopus 로고    scopus 로고
    • 5′-Untranslated region of heat shock protein 70 mRNA drives translation under hypertonic conditions
    • Rocchi, L., Alfieri, R.R., Petronini, P.G., Montanaro, L. & Brigotti, M. 5′-Untranslated region of heat shock protein 70 mRNA drives translation under hypertonic conditions. Biochem. Biophys. Res. Commun. 431, 321-325 (2013).
    • (2013) Biochem. Biophys. Res. Commun , vol.431 , pp. 321-325
    • Rocchi, L.1    Alfieri, R.R.2    Petronini, P.G.3    Montanaro, L.4    Brigotti, M.5
  • 38
    • 84901611036 scopus 로고    scopus 로고
    • Mass-spectrometry-based draft of the human proteome
    • Wilhelm, M. et al. Mass-spectrometry-based draft of the human proteome. Nature 509, 582-587 (2014).
    • (2014) Nature , vol.509 , pp. 582-587
    • Wilhelm, M.1
  • 39
    • 84891796097 scopus 로고    scopus 로고
    • ProteomeXchange provides globally coordinated proteomics data submission and dissemination
    • Vizcaíno, J.A. et al. ProteomeXchange provides globally coordinated proteomics data submission and dissemination. Nat. Biotechnol. 32, 223-226 (2014).
    • (2014) Nat. Biotechnol , vol.32 , pp. 223-226
    • Vizcaíno, J.A.1
  • 40
    • 0017191401 scopus 로고
    • An efficient mRNA-dependent translation system from reticulocyte lysates
    • Pelham, H.R. & Jackson, R.J. An efficient mRNA-dependent translation system from reticulocyte lysates. Eur. J. Biochem. 67, 247-256 (1976).
    • (1976) Eur. J. Biochem , vol.67 , pp. 247-256
    • Pelham, H.R.1    Jackson, R.J.2
  • 41
    • 0004136246 scopus 로고    scopus 로고
    • eds. Sambrook, J. & Russel, D.W 7.31-7.34 (Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York, USA Separation of RNA According to Size. Electrophoresis of RNA through agarose gels containing formaldehyde
    • Separation of RNA According to Size. Electrophoresis of RNA through agarose gels containing formaldehyde. In Molecular Cloning-A Laboratory Manual 3rd edn. Vol. 1 (eds. Sambrook, J. & Russel, D.W.) 7.31-7.34 (Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York, USA, 2001).
    • (2001) Molecular Cloning-A Laboratory Manual 3rd Edn , vol.1


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