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Volumn 339, Issue 3, 2004, Pages 495-504

Identification of a new antizyme mRNA +1 frameshifting stimulatory pseudoknot in a subset of diverse invertebrates and its apparent absence in intermediate species

Author keywords

antizyme; frameshifting; IBV, infectious bronchitis virus; ODC, ornithine decarboxylase; ORF, open reading frame; pseudoknot; recoding

Indexed keywords

ENZYME ANTIBODY;

EID: 2442506941     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jmb.2004.03.082     Document Type: Article
Times cited : (23)

References (45)
  • 1
    • 0026714435 scopus 로고
    • Ornithine decarboxylase is degraded by the 26 S proteasome without ubiquitination
    • Murakami Y., Matsufuji S., Kameji T., Hayashi S., Igarashi K., Tamura T., et al. Ornithine decarboxylase is degraded by the 26 S proteasome without ubiquitination. Nature. 360:1992;597-599
    • (1992) Nature , vol.360 , pp. 597-599
    • Murakami, Y.1    Matsufuji, S.2    Kameji, T.3    Hayashi, S.4    Igarashi, K.5    Tamura, T.6
  • 2
    • 0345701307 scopus 로고    scopus 로고
    • Determinants of proteasome recognition of ornithine decarboxylase, a ubiquitin-independent substrate
    • Zhang M., Pickart C.M., Coffino P. Determinants of proteasome recognition of ornithine decarboxylase, a ubiquitin-independent substrate. EMBO J. 22:2003;1488-1496
    • (2003) EMBO J. , vol.22 , pp. 1488-1496
    • Zhang, M.1    Pickart, C.M.2    Coffino, P.3
  • 3
    • 0034177792 scopus 로고    scopus 로고
    • Properties of a polyamine transporter regulated by antizyme
    • Sakata K., Kashiwagi K., Igarashi K. Properties of a polyamine transporter regulated by antizyme. Biochem. J. 347:2000;297-303
    • (2000) Biochem. J. , vol.347 , pp. 297-303
    • Sakata, K.1    Kashiwagi, K.2    Igarashi, K.3
  • 5
    • 0041853847 scopus 로고    scopus 로고
    • Antizyme overexpression in transgenic mice reduces cell proliferation, increases apoptosis, and reduces N-nitrosomethylbenzlamine-induced forestomach carcinogenesis
    • Fong L.Y., Feith D.J., Pegg A.E. Antizyme overexpression in transgenic mice reduces cell proliferation, increases apoptosis, and reduces N-nitrosomethylbenzlamine-induced forestomach carcinogenesis. Cancer Res. 63:2003;3945-3954
    • (2003) Cancer Res. , vol.63 , pp. 3945-3954
    • Fong, L.Y.1    Feith, D.J.2    Pegg, A.E.3
  • 7
    • 0037440428 scopus 로고    scopus 로고
    • Antizyme is a target of sex-lethal in the Drosophila germ line and appears to act downstream of hedgehog to regulate sex-lethal and cyclin B
    • Vied C., Halachmi N., Salzberg A., Horabin J.I. Antizyme is a target of sex-lethal in the Drosophila germ line and appears to act downstream of hedgehog to regulate sex-lethal and cyclin B. Dev. Biol. 253:2003;214-229
    • (2003) Dev. Biol. , vol.253 , pp. 214-229
    • Vied, C.1    Halachmi, N.2    Salzberg, A.3    Horabin, J.I.4
  • 8
    • 0025164449 scopus 로고
    • Analyses of ornithine decarboxylase antizyme mRNA with a cDNA cloned fron rat liver
    • Matsufuji S., Miyazaki Y., Kanamoto R., Kameji T., Murakami Y., Baby T., et al. Analyses of ornithine decarboxylase antizyme mRNA with a cDNA cloned fron rat liver. J. Biochem. 108:1990;365-371
    • (1990) J. Biochem. , vol.108 , pp. 365-371
    • Matsufuji, S.1    Miyazaki, Y.2    Kanamoto, R.3    Kameji, T.4    Murakami, Y.5    Baby, T.6
  • 9
    • 0026577742 scopus 로고
    • Cloning and characterization of a rat gene encoding ornithine decarboxylase antizyme
    • Miyazaki Y., Matsufuji S., Hayashi S. Cloning and characterization of a rat gene encoding ornithine decarboxylase antizyme. Gene. 113:1992;191-197
    • (1992) Gene , vol.113 , pp. 191-197
    • Miyazaki, Y.1    Matsufuji, S.2    Hayashi, S.3
  • 10
    • 0034678904 scopus 로고    scopus 로고
    • Conservation of polyamine regulation by translational frameshifting from yeast to mammals
    • Ivanov I.P., Matsufuji S., Murakami Y., Gesteland R.F., Atkins J.F. Conservation of polyamine regulation by translational frameshifting from yeast to mammals. EMBO J. 19:2000;1907-1917
    • (2000) EMBO J. , vol.19 , pp. 1907-1917
    • Ivanov, I.P.1    Matsufuji, S.2    Murakami, Y.3    Gesteland, R.F.4    Atkins, J.F.5
  • 12
    • 0026667889 scopus 로고
    • Recoding: Reprogrammed genetic decoding
    • Gesteland R.F., Weiss R.B., Atkins J.F. Recoding: reprogrammed genetic decoding. Science. 257:1992;1640-1641
    • (1992) Science , vol.257 , pp. 1640-1641
    • Gesteland, R.F.1    Weiss, R.B.2    Atkins, J.F.3
  • 13
    • 0035291218 scopus 로고    scopus 로고
    • Regulation of cellular polyamines by antizyme
    • Coffino P. Regulation of cellular polyamines by antizyme. Nature Rev. Mol. Cell. Biol. 2:2001;188-194
    • (2001) Nature Rev. Mol. Cell. Biol. , vol.2 , pp. 188-194
    • Coffino, P.1
  • 14
    • 0034283845 scopus 로고    scopus 로고
    • Antizyme expression: A subversion of triplet decoding, which is remarkably conserved by evolution, is a sensor for an autoregulatory circuit
    • Ivanov I.P., Gesteland R.F., Atkins J.F. Antizyme expression: a subversion of triplet decoding, which is remarkably conserved by evolution, is a sensor for an autoregulatory circuit. Nucl. Acids Res. 28:2000;3185-3196
    • (2000) Nucl. Acids Res. , vol.28 , pp. 3185-3196
    • Ivanov, I.P.1    Gesteland, R.F.2    Atkins, J.F.3
  • 15
    • 23444435083 scopus 로고
    • Polyamines regulate the expression of ornithine decarboxylase antizyme in vitro by inducing ribosomal frame-shifting
    • Rom E., Kahana C. Polyamines regulate the expression of ornithine decarboxylase antizyme in vitro by inducing ribosomal frame-shifting. Proc. Natl Acad. Sci. USA. 91:1994;3959-3963
    • (1994) Proc. Natl Acad. Sci. USA , vol.91 , pp. 3959-3963
    • Rom, E.1    Kahana, C.2
  • 17
    • 0032168048 scopus 로고    scopus 로고
    • A second mammalian antizyme: Conservation of programmed ribosomal frameshifting
    • Ivanov I.P., Gesteland R.F., Atkins J.F. A second mammalian antizyme: conservation of programmed ribosomal frameshifting. Genomics. 52:1998;119-129
    • (1998) Genomics , vol.52 , pp. 119-129
    • Ivanov, I.P.1    Gesteland, R.F.2    Atkins, J.F.3
  • 18
    • 0035179156 scopus 로고    scopus 로고
    • Cell culture analysis of the regulatory frameshift event required for the expression of mammalian antizymes
    • Howard M.T., Shirts B.H., Zhou J., Carlson C.L., Matsufuji S., Gesteland R.F., et al. Cell culture analysis of the regulatory frameshift event required for the expression of mammalian antizymes. Genes Cells. 6:2001;931-941
    • (2001) Genes Cells , vol.6 , pp. 931-941
    • Howard, M.T.1    Shirts, B.H.2    Zhou, J.3    Carlson, C.L.4    Matsufuji, S.5    Gesteland, R.F.6
  • 20
    • 0034098034 scopus 로고    scopus 로고
    • Identification and characterization of testis specific ornithine decarboxylase antizyme (OAZ-t) gene: Expression in haploid germ cells and polyamine-induced frameshifting
    • Tosaka Y., Tanaka H., Yano Y., Masai K., Nozaki M., Yomogida K., et al. Identification and characterization of testis specific ornithine decarboxylase antizyme (OAZ-t) gene: expression in haploid germ cells and polyamine-induced frameshifting. Genes Cells. 5:2000;265-276
    • (2000) Genes Cells , vol.5 , pp. 265-276
    • Tosaka, Y.1    Tanaka, H.2    Yano, Y.3    Masai, K.4    Nozaki, M.5    Yomogida, K.6
  • 22
    • 0024411889 scopus 로고
    • Characterization of an efficient Coronavirus ribosomal frameshifting signal: Requirement for an RNA pseudoknot
    • Brierley I., Digard P., Inglis S.C. Characterization of an efficient Coronavirus ribosomal frameshifting signal: requirement for an RNA pseudoknot. Cell. 57:1989;537-547
    • (1989) Cell , vol.57 , pp. 537-547
    • Brierley, I.1    Digard, P.2    Inglis, S.C.3
  • 23
    • 0027941188 scopus 로고
    • The sequences of, and distances between, two cis-acting signals determine the efficiency of ribosomal frameshifting in human immunodeficiency virus type 1 and human T-cell leukemia virus type II in vivo
    • Kollmus H., Honigman A., Panet A., Hauser H. The sequences of, and distances between, two cis-acting signals determine the efficiency of ribosomal frameshifting in human immunodeficiency virus type 1 and human T-cell leukemia virus type II in vivo. J. Virol. 68:1994;6087-6091
    • (1994) J. Virol. , vol.68 , pp. 6087-6091
    • Kollmus, H.1    Honigman, A.2    Panet, A.3    Hauser, H.4
  • 24
    • 0028307694 scopus 로고
    • Identification and analysis of the pseudoknot-containing gag-pro ribosomal frameshift signal of simian retrovirus-1
    • ten Dam E., Brierley I., Inglis S., Pleij C. Identification and analysis of the pseudoknot-containing gag-pro ribosomal frameshift signal of simian retrovirus-1. Nucl. Acids Res. 22:1994;2304-2310
    • (1994) Nucl. Acids Res. , vol.22 , pp. 2304-2310
    • Ten Dam, E.1    Brierley, I.2    Inglis, S.3    Pleij, C.4
  • 25
    • 0031559590 scopus 로고    scopus 로고
    • Structural probing and mutagenic analysis of the stem-loop required for E. coli dnaX ribosomal frameshifting: Programmed efficiency of 50%
    • Larsen B., Gesteland R.F., Atkins J.F. Structural probing and mutagenic analysis of the stem-loop required for E. coli dnaX ribosomal frameshifting: programmed efficiency of 50%. J. Mol. Biol. 271:1997;47-60
    • (1997) J. Mol. Biol. , vol.271 , pp. 47-60
    • Larsen, B.1    Gesteland, R.F.2    Atkins, J.F.3
  • 26
    • 0033532080 scopus 로고    scopus 로고
    • The role of RNA pseudoknot stem 1 length in the promotion of efficient -1 ribosomal frameshifting
    • Napthine S., Liphardt J., Bloys A., Routledge S., Brierley I. The role of RNA pseudoknot stem 1 length in the promotion of efficient -1 ribosomal frameshifting. J. Mol. Biol. 288:1999;305-320
    • (1999) J. Mol. Biol. , vol.288 , pp. 305-320
    • Napthine, S.1    Liphardt, J.2    Bloys, A.3    Routledge, S.4    Brierley, I.5
  • 27
    • 0029281776 scopus 로고
    • Analysis of the role of the pseudoknot component in the SRV-1 gag-pro ribosomal frameshift signal: Loop lengths and stability of the stem regions
    • ten Dam E., Verlaan P.W.G., Pleij C.W.A. Analysis of the role of the pseudoknot component in the SRV-1 gag-pro ribosomal frameshift signal: loop lengths and stability of the stem regions. RNA. 1:1995;146-154
    • (1995) RNA , vol.1 , pp. 146-154
    • Ten Dam, E.1    Verlaan, P.W.G.2    Pleij, C.W.A.3
  • 28
    • 0025769767 scopus 로고
    • Mutational analysis of the RNA pseudoknot component of a coronavirus ribosomal frameshifting signal
    • Brierley I., Rolley N.J., Jenner A.J., Inglis S.C. Mutational analysis of the RNA pseudoknot component of a coronavirus ribosomal frameshifting signal. J. Mol. Biol. 220:1991;889-902
    • (1991) J. Mol. Biol. , vol.220 , pp. 889-902
    • Brierley, I.1    Rolley, N.J.2    Jenner, A.J.3    Inglis, S.C.4
  • 29
    • 0035282697 scopus 로고    scopus 로고
    • Comparative mutational analysis of cis-acting RNA signals for translational frameshifting in HIV-1 and HTLV-2
    • Kim Y.-G., Maas S., Rich A. Comparative mutational analysis of cis-acting RNA signals for translational frameshifting in HIV-1 and HTLV-2. Nucl. Acids Res. 29:2001;1125-1131
    • (2001) Nucl. Acids Res. , vol.29 , pp. 1125-1131
    • Kim, Y.-G.1    Maas, S.2    Rich, A.3
  • 30
    • 0141856386 scopus 로고    scopus 로고
    • Characterization of RNA elements that regulate gag-pol ribosomal frameshifting in equine infectious anemia virus
    • Chen C., Montelaro R.C. Characterization of RNA elements that regulate gag-pol ribosomal frameshifting in equine infectious anemia virus. J. Virol. 77:2003;10280-10287
    • (2003) J. Virol. , vol.77 , pp. 10280-10287
    • Chen, C.1    Montelaro, R.C.2
  • 31
    • 0036675593 scopus 로고    scopus 로고
    • Comparative studies of frameshifting and non-frameshifting RNA pseudoknots: A mutational and NMR investigation of the pseudoknots derived from the T2 gene 32 mRNA and retroviral gag-pro frameshift site
    • Wang Y., Wills N., Du Z., Rangan J.F., Atkins J.F., Gesteland R.F., Hoffman D.W. Comparative studies of frameshifting and non-frameshifting RNA pseudoknots: a mutational and NMR investigation of the pseudoknots derived from the T2 gene 32 mRNA and retroviral gag-pro frameshift site. RNA. 8:2002;981-996
    • (2002) RNA , vol.8 , pp. 981-996
    • Wang, Y.1    Wills, N.2    Du, Z.3    Rangan, J.F.4    Atkins, J.F.5    Gesteland, R.F.6    Hoffman, D.W.7
  • 32
    • 0025691660 scopus 로고
    • Pseudoknots and the control of protein synthesis
    • Draper D.E. Pseudoknots and the control of protein synthesis. Curr. Opin. Cell Biol. 2:1990;1099-1103
    • (1990) Curr. Opin. Cell Biol. , vol.2 , pp. 1099-1103
    • Draper, D.E.1
  • 34
    • 0035200990 scopus 로고    scopus 로고
    • Ribosomal pausing at a frameshifter RNA pseudoknot is sensitive to reading phase but shows little correlation with frameshift efficiency
    • Kontos H., Napthine S., Brierley I. Ribosomal pausing at a frameshifter RNA pseudoknot is sensitive to reading phase but shows little correlation with frameshift efficiency. Mol. Cell Biol. 21:2001;8657-8670
    • (2001) Mol. Cell Biol. , vol.21 , pp. 8657-8670
    • Kontos, H.1    Napthine, S.2    Brierley, I.3
  • 35
    • 0035787892 scopus 로고    scopus 로고
    • Structure and function of the stimulatory RNAs involved in programmed eukaryotic -1 ribosomal frameshifting
    • Brierley I., Pennell S. Structure and function of the stimulatory RNAs involved in programmed eukaryotic -1 ribosomal frameshifting. Cold. Spring Harbor Symp. Quant. Biol. 66:2001;233-248
    • (2001) Cold. Spring Harbor Symp. Quant. Biol. , vol.66 , pp. 233-248
    • Brierley, I.1    Pennell, S.2
  • 36
    • 0034724565 scopus 로고    scopus 로고
    • Structure, stability and function of RNA pseudoknots involved in stimulating ribosomal frameshifting
    • Giedroc D.P., Theimer C.A., Nixon P.L. Structure, stability and function of RNA pseudoknots involved in stimulating ribosomal frameshifting. J. Mol. Biol. 298:2001;167-185
    • (2001) J. Mol. Biol. , vol.298 , pp. 167-185
    • Giedroc, D.P.1    Theimer, C.A.2    Nixon, P.L.3
  • 38
    • 0032573606 scopus 로고    scopus 로고
    • Secondary structure and mutational analysis of the ribosomal frameshift signal of Rous sarcoma virus
    • Marczinke B., Fisher R., Vidakovic M., Bloys A.J., Brierley I. Secondary structure and mutational analysis of the ribosomal frameshift signal of Rous sarcoma virus. J. Mol. Biol. 284:1998;205-225
    • (1998) J. Mol. Biol. , vol.284 , pp. 205-225
    • Marczinke, B.1    Fisher, R.2    Vidakovic, M.3    Bloys, A.J.4    Brierley, I.5
  • 39
    • 0028962374 scopus 로고
    • Structural and functional studies of retroviral RNA pseudoknots involved in ribosomal frameshifting: Nucleotides at the junction of the two stems are important for efficient ribosomal frameshifting
    • Chen X., Chamorro M., Lee S.I., Shen L.X., Hines J.V., Tinoco I., Varmus H.E. Structural and functional studies of retroviral RNA pseudoknots involved in ribosomal frameshifting: nucleotides at the junction of the two stems are important for efficient ribosomal frameshifting. EMBO J. 14:1995;842-852
    • (1995) EMBO J. , vol.14 , pp. 842-852
    • Chen, X.1    Chamorro, M.2    Lee, S.I.3    Shen, L.X.4    Hines, J.V.5    Tinoco, I.6    Varmus, H.E.7
  • 40
    • 0030602904 scopus 로고    scopus 로고
    • A characteristic bent conformation promotes -1 frameshifting during translation of retroviral RNA
    • Chen X., Kang H., Shen L.X., Chamorro M., Varmus H.E., Tinoco I. A characteristic bent conformation promotes -1 frameshifting during translation of retroviral RNA. J. Mol. Biol. 260:1996;479-483
    • (1996) J. Mol. Biol. , vol.260 , pp. 479-483
    • Chen, X.1    Kang, H.2    Shen, L.X.3    Chamorro, M.4    Varmus, H.E.5    Tinoco, I.6
  • 41
    • 0030740427 scopus 로고    scopus 로고
    • A mutant RNA pseudoknot that promotes ribosomal frameshifting in mouse mammary tumor virus
    • Kang H., Tinoco I. A mutant RNA pseudoknot that promotes ribosomal frameshifting in mouse mammary tumor virus. Nucl. Acids Res. 25:1997;1943-1949
    • (1997) Nucl. Acids Res. , vol.25 , pp. 1943-1949
    • Kang, H.1    Tinoco, I.2
  • 42
    • 0034065063 scopus 로고    scopus 로고
    • Contribution of the intercalated adenosine at the helical junction to the stability of the gag-pro frameshifting pseudoknot from mouse mammary tumor virus
    • Theimer C.A., Giedroc D.P. Contribution of the intercalated adenosine at the helical junction to the stability of the gag-pro frameshifting pseudoknot from mouse mammary tumor virus. RNA. 6:2000;409-421
    • (2000) RNA , vol.6 , pp. 409-421
    • Theimer, C.A.1    Giedroc, D.P.2
  • 43
    • 0033532081 scopus 로고    scopus 로고
    • Evidence for an RNA pseudoknot loop-helix interaction essential for efficient -1 ribosomal frameshifting
    • Liphardt J., Napthine S., Kontos H., Brierley I. Evidence for an RNA pseudoknot loop-helix interaction essential for efficient -1 ribosomal frameshifting. J. Mol. Biol. 288:1999;321-335
    • (1999) J. Mol. Biol. , vol.288 , pp. 321-335
    • Liphardt, J.1    Napthine, S.2    Kontos, H.3    Brierley, I.4
  • 44
    • 0038179387 scopus 로고    scopus 로고
    • Modernizing the tree of life
    • Pennisi E. Modernizing the tree of life. Science. 300:2003;1692-1697
    • (2003) Science , vol.300 , pp. 1692-1697
    • Pennisi, E.1
  • 45
    • 0031668476 scopus 로고    scopus 로고
    • Programmed frameshifting in the synthesis of mammalian antizyme is +1 in mammals, predominantly +1 in fission yeast, but -2 in budding yeast
    • Ivanov I.P., Gesteland R.F., Matsufuji S., Atkins J.F. Programmed frameshifting in the synthesis of mammalian antizyme is +1 in mammals, predominantly +1 in fission yeast, but -2 in budding yeast. RNA. 4:1998;1230-1238
    • (1998) RNA , vol.4 , pp. 1230-1238
    • Ivanov, I.P.1    Gesteland, R.F.2    Matsufuji, S.3    Atkins, J.F.4


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