SCOUP: Probabilistic model based on the Ornstein-Uhlenbeck process to analyze single-cell expression data during differentiation

BMC Bioinformatics

Volumn 17, Issue 1, 2016, Pages

  Matsumoto, Hirotaka ^a,b   Kiryu, Hisanori ^b  

^a RIKEN   (Japan)

^b UNIVERSITY OF TOKYO   (Japan)

Author keywords

Differentiation analysis; Ornstein Uhlenbeck process; Single cell transcriptomics

Indexed keywords

CYTOLOGY; GENE EXPRESSION; GENES; RANDOM PROCESSES; RNA; STOCHASTIC SYSTEMS;

CELLULAR DIFFERENTIATION; CORRELATION ANALYSIS; DIFFERENTIATION PROCESS; ORNSTEIN-UHLENBECK PROCESS; PROBABILISTIC MODELING; REGULATORY RELATIONSHIPS; SINGLECELL ANALYSIS; TRANSCRIPTOMICS;

CELLS;

CALCULATION; CELL FATE; CELL LINEAGE; CORRELATION ANALYSIS; GENE EXPRESSION; INTERMETHOD COMPARISON; MARKOV CHAIN; SINGLE CELL ANALYSIS; TIME PERCEPTION; TRANSCRIPTOMICS; ALGORITHM; AREA UNDER THE CURVE; CELL DIFFERENTIATION; CELL LINE; CLUSTER ANALYSIS; GENE EXPRESSION REGULATION; GENE ONTOLOGY; GENE REGULATORY NETWORK; GENETICS; HUMAN; METABOLISM; PRINCIPAL COMPONENT ANALYSIS; PROCEDURES; REPRODUCIBILITY; STATISTICAL MODEL; TIME FACTOR;

TRANSCRIPTION FACTOR;

ALGORITHMS; AREA UNDER CURVE; CELL DIFFERENTIATION; CELL LINE; CELL LINEAGE; CLUSTER ANALYSIS; GENE EXPRESSION REGULATION; GENE ONTOLOGY; GENE REGULATORY NETWORKS; HUMANS; MODELS, STATISTICAL; PRINCIPAL COMPONENT ANALYSIS; REPRODUCIBILITY OF RESULTS; SINGLE-CELL ANALYSIS; STOCHASTIC PROCESSES; TIME FACTORS; TRANSCRIPTION FACTORS;

EID: 84975764298     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/s12859-016-1109-3     Document Type: Article

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