Analysis of possible genetic risk factors contributing to development of childhood acute lymphoblastic leukaemia in the Latvian population

Archives of Medical Science

Volumn 12, Issue 3, 2016, Pages 479-485

  Kreile, Madara ^a,b   Piekuse, Linda ^a   Rots, Dmitrijs ^a   Dobele, Zane ^a   Kovalova, Zhanna ^b   Lace, Baiba ^c  

^a RIGA STRADINS UNIVERSITY   (Latvia)

^b CHILDREN'S CLINICAL UNIVERSITY HOSPITAL   (Latvia)

^c LATVIAN BIOMEDICAL RESEARCH AND STUDY CENTRE   (Latvia)

Author keywords

ARID5B; Childhood acute lymphoblastic leukaemia; IKZF1; Single nucleotide polymorphisms

Indexed keywords

CYCLIN DEPENDENT KINASE INHIBITOR 2A; DNA;

ACUTE LYMPHOBLASTIC LEUKEMIA; ADOLESCENT; ADULT; ARID5B GENE; ARTICLE; CANCER RISK; CARCINOGENESIS; CDKN2A GENE; CEBPE GENE; CHILD; CHILDHOOD LEUKEMIA; CONTROLLED STUDY; FEMALE; GENE; GENE LINKAGE DISEQUILIBRIUM; GENETIC ASSOCIATION; GENETIC RISK; GENETIC VARIATION; HUMAN; HUMAN CELL; IKZF1 GENE; LETT (PEOPLE); MAJOR CLINICAL STUDY; MALE; NQO1 GENE; SINGLE NUCLEOTIDE POLYMORPHISM;

EID: 84973484246     PISSN: 17341922     EISSN: 18969151     Source Type: Journal    
DOI: 10.5114/aoms.2016.59920     Document Type: Article

References (41)

1. Lautner-Csorba O, Gezsi A, Erdelyi DJ, et al. Roles of genetic polymorphisms in the folate pathway in childhood acute lymphoblastic leukemia evaluated by Bayesian relevance and effect size analysis. PLoS One 2013;8:e69843.
2. Yang JJ, Cheng C, Devidas M, et al. Genome-wide association study identifies germline polymorphisms associated with relapse of childhood acute lymphoblastic leukemia. Blood 2012;20:4197-204.
3. Zhai X, Wang H, Zhu X, et al. Gene polymorphisms of ABC transporters are associated with clinical outcomes in children with acute lymphoblastic leukemia. Arch Med Sci 2012;8:659-71.
4. Mullighan CG. The molecular genetic makeup of acute lymphoblastic leukemia. Hematology Am Soc Hematol Educ Program 2012;2012:389-96.
5. Peyrouze P, Guihard S, Grardel N, et al. Genetic polymorphisms in ARID5B, CEBPE, IKZF1 and CDKN2A in relation with risk of acute lymphoblastic leukaemia in adults: a Group for Research on Adult Acute Lymphoblastic Leukaemia (GRAALL) study. Br J Haematol 2012;5:599-602.
6. Lausten-Thomsen U, Madsen HO, Vestergaard TR, Hjalgrim H, Nersting J, Schmiegelow K. Prevalence of t (12;21) [ETV6-RUNX1]-positive cells in healthy neonates. Blood 2011;1:186-9.
7. Healy J, Belanger H, Beaulieu P, Lariviere M, Labuda D, Sinnett D. Promoter SNPs in G1/S checkpoint regulators and their impact on the susceptibility to childhood leukemia. Blood 2007;2:683-92.
8. Offenmuller S, Ravindranath Y, Goyette G, et al. Focused screening of a panel of cancer-related genetic polymorphisms reveals new susceptibility loci for pediatric acute lymphoblastic leukemia. Pediatr Blood Cancer 2014;8:1411-5.
9. Enciso-Mora V, Hosking FJ, Sheridan E, et al. Common genetic variation contributes significantly to the risk of childhood B-cell precursor acute lymphoblastic leukemia. Leukemia 2012;10:2212-5.
10. Trevino LR, Yang W, French D, et al. Germline genomic variants associated with childhood acute lymphoblastic leukemia. Nat Genet 2009;9:1001-5.
11. Lin CY, Li MJ, Chang JG, et al. High-resolution melting analyses for genetic variants in ARID5B and IKZF1 with childhood acute lymphoblastic leukemia susceptibility loci in Taiwan. Blood Cells Mol Dis 2014;2-3:140-5.
12. Gutierrez-Camino A, Lopez-Lopez E, Martin-Guerrero I, et al. Intron 3 of the ARID5B gene: a hot spot for acute lymphoblastic leukemia susceptibility. J Cancer Res Clin Oncol 2013;11:1879-86.
13. Papaemmanuil E, Hosking FJ, Vijayakrishnan J, et al. Loci on 7p12.2, 10q21.2 and 14q11.2 are associated with risk of childhood acute lymphoblastic leukemia. Nat Genet 2009;9:1006-10.
14. Qazi, S, Ma H, Uckun FM. Absence of genomic deletions in pediatric B-precursor acute lymphoblastic leukemia. Int J Mol Med Sci 2013;9:72-82.
15. Prasad RB, Hosking FJ, Vijayakrishnan J, et al. Verification of the susceptibility loci on 7p12.2, 10q21.2, and 14q11.2 in precursor B-cell acute lymphoblastic leukemia of childhood. Blood 2010;9:1765-7.
16. Sherborne AL, Hosking FJ, Prasad RB, et al. Variation in CDKN2A at 9p21.3 influences childhood acute lymphoblastic leukemia risk. Nat Genet 2010;6:492-4.
17. Nousome D, Lupo PJ, Okcu MF, Scheurer ME. Maternal and offspring xenobiotic metabolism haplotypes and the risk of childhood acute lymphoblastic leukemia. Leuk Res 2013;5:531-5.
18. Huang GZ, Shan W, Zeng L, Huang LG. The GSTP1 A1578G polymorphism and the risk of childhood acute lymphoblastic leukemia: results from an updated meta-analysis. Genet Mol Res 2013;3:2481-91.
19. Chauhan PS, Ihsan R, Mishra AK, et al. High order interactions of xenobiotic metabolizing genes and P53 codon 72 polymorphisms in acute leukemia. Environ Mol Mutagen 2012;8:619-30.
20. Dunna NR, Vure S, Sailaja K, et al. Deletion of GSTM1 and T1 genes as a risk factor for development of acute leukemia. Asian Pac J Cancer Prev 2013;4:2221-4.
21. Xu LY, Cao LF. GSTT1 genetic polymorphism and susceptibility to childhood acute lymphoblastic leukemia: a meta-analysis. Tumour Biol 2014;2:1433-7.
22. Liu D, Liu Y, Ran L, Shang H, Li D. GSTT1 and GSTM1 polymorphisms and prostate cancer risk in Asians: a systematic review and meta-analysis. Tumour Biol 2013;5:2539-44.
23. Amer MA, Ghattas MH, Abo-Elmatty DM, Abou-El-Ela SH. Evaluation of glutathione S-transferase P1 genetic variants affecting type-2 diabetes susceptibility and glycemic control. Arch Med Sci 2012;8:631-6.
24. Ouerhani S, Cherif N, Bahri I, Safra I, Menif S, Abbes S. Genetic polymorphisms of NQO1, CYP1A1 and TPMT and susceptibility to acute lymphoblastic leukemia in a Tunisian population. Mol Biol Rep 2013;2:1307-14.
25. Zheng B, Wang Z, Chai R. NQO1 C609T polymorphism and colorectal cancer susceptibility: a meta-analysis. Arch Med Sci 2014;10:651-60.
26. Li C, Zhou Y. Association between NQO1 C609T polymorphism and acute lymphoblastic leukemia risk: evidence from an updated meta-analysis based on 17 case-control studies. J Cancer Res Clin Oncol 2014;6:873-81.
27. John SW, Weitzner G, Rozen R, Scriver CR. A rapid procedure for extracting genomic DNA from leukocytes. Nucleic Acids Res 1991;2:408.
28. Kondo S, Sturgis EM, Li F, Wei Q, Li G. GSTM1 and GSTT1 null polymorphisms and risk of salivary gland carcinoma. Int J Clin Exp Med 2009;1:68-75.
29. Jugessur A, Shi M, Gjessing HK, et al. Genetic determinants of facial clefting: analysis of 357 candidate genes using two national cleft studies from Scandinavia. PLoS One 2009;4:e5385.
30. Purcell S, Neale B, Todd-Brown K, et al. PLINK: a tool set for whole-genome association and population-based linkage analyses. Am J Hum Genet 2007;3:559-75.
31. Xu H, Yang W, Perez-Andreu V, et al. Novel susceptibility variants at 10p12.31-12.2 for childhood acute lymphoblastic leukemia in ethnically diverse populations. J Natl Cancer Inst 2013;10:733-42.
32. Guo LM, Xi JS, Ma Y, Shao L, Nie CL, Wang GJ. ARID5B gene rs10821936 polymorphism is associated with childhood acute lymphoblastic leukemia: a meta-analysis based on 39, 116 subjects. Tumour Biol 2014;1:709-13.
33. Kennedy AE, Kamdar KY, Lupo PJ, Okcu MF, Scheurer ME, Dorak MT. Genetic markers in a multi-ethnic sample for childhood acute lymphoblastic leukemia risk. Leuk Lymphoma 2015;56:169-74.
34. Inaba H, Greaves M, Mullighan CG. Acute lymphoblastic leukaemia. Lancet 2013;9881:1943-55.
35. Wang Y, Chen J, Li J, et al. Association of three polymorphisms in ARID5B, IKZF1 and CEBPE with the risk of childhood acute lymphoblastic leukemia in a Chinese population. Gene 2013;2:203-7.
36. Vijayakrishnan J, Sherborne AL, Sawangpanich R, Hongeng S, Houlston RS, Pakakasama S. Variation at 7p12.2 and 10q21.2 influences childhood acute lymphoblastic leukemia risk in the Thai population and may contribute to racial differences in leukemia incidence. Leuk Lymphoma 2010;10:1870-4.
37. Pastorczak A, Gorniak P, Sherborne A, et al. Role of 657del5 NBN mutation and 7p12.2(IKZF1), 9p21 (CDKN2A), 10q21.2 (ARID5B) and 14q11.2 (CEBPE) variation and risk of childhood ALL in the Polish population. Leuk Res 2011;11:1534-6.
38. Nelis M, Esko T, Magi R, et al. Genetic structure of Europeans: a view from the North-East. PLoS One 2009;5:e5472.
39. Healy J, Richer C, Bourgey M, Kritikou EA, Sinnett D. Replication analysis confirms the association of ARID5B with childhood B-cell acute lymphoblastic leukemia. Haematologica 2010;9:1608-11.
40. Tang ST, Wang CJ, Tang HQ, Zhang Q, Wang Y. Evaluation of glutathione S-transferase genetic variants affecting type 2 diabetes susceptibility: a meta-analysis. Gene 2013;2:301-8.
41. Han FF, Guo CL, Gong LL, Jin Z, Liu LH. Effects of the NQO1 609C>T polymorphism on leukemia susceptibility: evidence from a meta-analysis. Asian Pac J Cancer Prev 2013;9:5311-6.