-
1
-
-
84866121642
-
Weak selection and protein evolution
-
Akashi H, Osada N, Ohta T. 2012. Weak selection and protein evolution. Genetics 192:15-31
-
(2012)
Genetics
, vol.192
, pp. 15-31
-
-
Akashi, H.1
Osada, N.2
Ohta, T.3
-
2
-
-
77950628781
-
The recombination landscape of the zebra finch Taeniopygia guttata genome
-
BackströmN, ForstmeierW, Schielzeth H,Mellenius H, NamK, Bolund E, Webster MT, Ost T, Schneider M, Kempenaers B, et al. 2010. The recombination landscape of the zebra finch Taeniopygia guttata genome. Genome Res. 20:485-495
-
(2010)
Genome Res
, vol.20
, pp. 485-495
-
-
Backström, N.1
Forstmeier, W.2
Schielzeth, H.3
Mellenius, H.4
Nam, K.5
Bolund, E.6
Webster, M.T.7
Ost, T.8
Schneider, M.9
Kempenaers, B.10
-
3
-
-
84964765667
-
Recombination rate variation modulates gene sequence evolution mainly via GC-biased gene conversion, not Hill-Robertson interference, in an avian system
-
Bolívar P, Mugal CF, Nater A, Ellegren H. 2016. Recombination rate variation modulates gene sequence evolution mainly via GC-biased gene conversion, not Hill-Robertson interference, in an avian system. Mol Biol Evol. 33:216-227
-
(2016)
Mol Biol Evol
, vol.33
, pp. 216-227
-
-
Bolívar, P.1
Mugal, C.F.2
Nater, A.3
Ellegren, H.4
-
4
-
-
84862506964
-
A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118 F;; Iso-2; iso-3
-
Cingolani P, Platts A, Wang LL, Coon M, Nguyen T, Wang L, Land SJ, Ruden DM, Lu X. 2012. A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118 F;; iso-2; iso-3. Fly (Austin) 6:80-92
-
(2012)
Fly (Austin)
, vol.6
, pp. 80-92
-
-
Cingolani, P.1
Platts, A.2
Wang, L.L.3
Coon, M.4
Nguyen, T.5
Wang, L.6
Land, S.J.7
Ruden, D.M.8
Lu, X.9
-
5
-
-
0019446386
-
Population density and body size in mammals
-
Damuth J. 1981. Population density and body size in mammals. Nature 290:699-700
-
(1981)
Nature
, vol.290
, pp. 699-700
-
-
Damuth, J.1
-
6
-
-
67650366969
-
A database of vertebrate longevity records and their relation to other life-history traits
-
de Magalhaes JP, Costa J. 2009. A database of vertebrate longevity records and their relation to other life-history traits. J Evol Biol. 22:1770-1774
-
(2009)
J Evol Biol
, vol.22
, pp. 1770-1774
-
-
De Magalhaes, J.P.1
Costa, J.2
-
7
-
-
34249683717
-
An analysis of the relationship between metabolism, developmental schedules, and longevity using phylogenetic independent contrasts
-
de Magalhaes JP, Costa J, Church GM. 2007. An analysis of the relationship between metabolism, developmental schedules, and longevity using phylogenetic independent contrasts. J Gerontol A Biol Sci Med Sci. 62:149-160
-
(2007)
J Gerontol A Biol Sci Med Sci
, vol.62
, pp. 149-160
-
-
De Magalhaes, J.P.1
Costa, J.2
Church, G.M.3
-
8
-
-
84903742389
-
OrthoMaM v8: A database of orthologous exons and coding sequences for comparative genomics in mammals
-
Douzery EJP, Scornavacca C, Romiguier J, Belkhir K, Galtier N, Delsuc F, Ranwez V. 2014. OrthoMaM v8: a database of orthologous exons and coding sequences for comparative genomics in mammals. Mol Biol Evol. 31:1923-1928
-
(2014)
Mol Biol Evol
, vol.31
, pp. 1923-1928
-
-
Douzery, E.J.P.1
Scornavacca, C.2
Romiguier, J.3
Belkhir, K.4
Galtier, N.5
Delsuc, F.6
Ranwez, V.7
-
10
-
-
70350236484
-
Biased gene conversion and the evolution of mammalian genomic landscapes
-
Duret L, Galtier N. 2009. Biased gene conversion and the evolution of mammalian genomic landscapes. Annu Rev Genomics Hum Genet. 10:285-311
-
(2009)
Annu Rev Genomics Hum Genet
, vol.10
, pp. 285-311
-
-
Duret, L.1
Galtier, N.2
-
11
-
-
53249100490
-
Non-homogeneous models of sequence evolution in the Bio and thorn and thorn suite of libraries and programs
-
Dutheil J, Boussau B. 2008. Non-homogeneous models of sequence evolution in the Bio and thorn and thorn suite of libraries and programs. BMC Evol Biol. 8:255
-
(2008)
BMC Evol Biol
, vol.8
, pp. 255
-
-
Dutheil, J.1
Boussau, B.2
-
12
-
-
84863606023
-
Efficient selection of branch-specific models of sequence evolution
-
Dutheil JY, Galtier N, Romiguier J, Douzery EJ, Ranwez V, Boussau B. 2012. Efficient selection of branch-specific models of sequence evolution. Mol Biol Evol. 29:1861-1874
-
(2012)
Mol Biol Evol
, vol.29
, pp. 1861-1874
-
-
Dutheil, J.Y.1
Galtier, N.2
Romiguier, J.3
Douzery, E.J.4
Ranwez, V.5
Boussau, B.6
-
13
-
-
72649102150
-
Distributions of selectively constrained sites and deleterious mutation rates in the hominid and murid genomes
-
Eöry L, Halligan DL, Keightley PD. 2010. Distributions of selectively constrained sites and deleterious mutation rates in the hominid and murid genomes. Mol Biol Evol. 27:177-192
-
(2010)
Mol Biol Evol
, vol.27
, pp. 177-192
-
-
Eöry, L.1
Halligan, D.L.2
Keightley, P.D.3
-
14
-
-
34447546660
-
The distribution of fitness effects of new mutations
-
Eyre-Walker A, Keightley PD. 2007. The distribution of fitness effects of new mutations. Nat Rev Genet. 8:610-618
-
(2007)
Nat Rev Genet
, vol.8
, pp. 610-618
-
-
Eyre-Walker, A.1
Keightley, P.D.2
-
15
-
-
0022203256
-
Phylogenies and the comparative method
-
Felsenstein J. 1985. Phylogenies and the comparative method. Am Nat. 125:1-15
-
(1985)
Am Nat
, vol.125
, pp. 1-15
-
-
Felsenstein, J.1
-
16
-
-
84928266371
-
Biased gene conversion and GC-content evolution in the coding sequences of reptiles and vertebrates
-
Figuet E, Ballenghien M, Romiguier J, Galtier N. 2014. Biased gene conversion and GC-content evolution in the coding sequences of reptiles and vertebrates. Genome Biol Evol. 7:240-250
-
(2014)
Genome Biol Evol
, vol.7
, pp. 240-250
-
-
Figuet, E.1
Ballenghien, M.2
Romiguier, J.3
Galtier, N.4
-
17
-
-
84899653351
-
Mitochondrial DNA as a tool for reconstructing past life-history traits in mammals
-
Figuet E, Romiguier J, Dutheil JY, Galtier N. 2014a. Mitochondrial DNA as a tool for reconstructing past life-history traits in mammals. J Evol Biol. 27:899-910
-
(2014)
J Evol Biol
, vol.27
, pp. 899-910
-
-
Figuet, E.1
Romiguier, J.2
Dutheil, J.Y.3
Galtier, N.4
-
18
-
-
34248641119
-
Adaptation or biased gene conversion? Extending the null hypothesis of molecular evolution
-
Galtier N, Duret L. 2007. Adaptation or biased gene conversion? Extending the null hypothesis of molecular evolution. Trends Genet. 23:273-277
-
(2007)
Trends Genet
, vol.23
, pp. 273-277
-
-
Galtier, N.1
Duret, L.2
-
19
-
-
58149328496
-
GC-biased gene conversion promotes the fixation of deleterious amino acid changes in primates
-
Galtier N, Duret L, Glémin S, Ranwez V. 2009. GC-biased gene conversion promotes the fixation of deleterious amino acid changes in primates. Trends Genet. 25:1-5
-
(2009)
Trends Genet
, vol.25
, pp. 1-5
-
-
Galtier, N.1
Duret, L.2
Glémin, S.3
Ranwez, V.4
-
20
-
-
0034766004
-
GC-content evolution in mammalian genomes: The biased gene conversion hypothesis
-
Galtier N, Piganeau G, Mouchiroud D, Duret L. 2001. GC-content evolution in mammalian genomes: the biased gene conversion hypothesis. Genetics 159:907-911
-
(2001)
Genetics
, vol.159
, pp. 907-911
-
-
Galtier, N.1
Piganeau, G.2
Mouchiroud, D.3
Duret, L.4
-
21
-
-
11944256302
-
Procedures for the analysis of comparative data using phylogenetically independent contrasts
-
Garland T, Harvey P, Ives A. 1992. Procedures for the analysis of comparative data using phylogenetically independent contrasts. Syst Biol. 41:18-32
-
(1992)
Syst Biol
, vol.41
, pp. 18-32
-
-
Garland, T.1
Harvey, P.2
Ives, A.3
-
22
-
-
84892556788
-
Population size dependence of fitness effect distribution and substitution rate probed by biophysical model of protein thermostability
-
Goldstein RA. 2013. Population size dependence of fitness effect distribution and substitution rate probed by biophysical model of protein thermostability. Genome Biol Evol. 5:1584-1593
-
(2013)
Genome Biol Evol
, vol.5
, pp. 1584-1593
-
-
Goldstein, R.A.1
-
23
-
-
84927172726
-
Highly variable recombinational landscape modulates efficacy of natural selection in birds
-
Gossmann TI, Santure AW, Sheldon BC, Slate J, Zeng K. 2014. Highly variable recombinational landscape modulates efficacy of natural selection in birds. Genome Biol Evol. 6:2061-2075
-
(2014)
Genome Biol Evol
, vol.6
, pp. 2061-2075
-
-
Gossmann, T.I.1
Santure, A.W.2
Sheldon, B.C.3
Slate, J.4
Zeng, K.5
-
24
-
-
84867455059
-
A large phylogeny of turtles (Testudines) using molecular data
-
Guillon J, Hulin V, Girondot M. 2012. A large phylogeny of turtles (Testudines) using molecular data. Contrib Zool. 81:147-158
-
(2012)
Contrib Zool
, vol.81
, pp. 147-158
-
-
Guillon, J.1
Hulin, V.2
Girondot, M.3
-
25
-
-
0030778833
-
The complete mitochondrial genome of Alligator mississippiensis and the separation between recent archosauria (birds and crocodiles)
-
Janke A, Arnason U. 1997. The complete mitochondrial genome of Alligator mississippiensis and the separation between recent archosauria (birds and crocodiles). Mol Biol Evol. 14:1266-1272
-
(1997)
Mol Biol Evol
, vol.14
, pp. 1266-1272
-
-
Janke, A.1
Arnason, U.2
-
26
-
-
84917708482
-
Whole-genome analyses resolve early branches in the tree of life of modern birds
-
Jarvis ED, Aberer AJ, LiB,Houde P, Li C, Ho SYW, Faircloth BC, NabholzB, Howard JT, Suh A, et al. 2014. Whole-genome analyses resolve early branches in the tree of life of modern birds. Science 346:1126-1138
-
(2014)
Science
, vol.346
, pp. 1126-1138
-
-
Jarvis, E.D.1
Aberer, A.J.2
Li, B.3
Houde, P.4
Li, C.5
Ho, S.Y.W.6
Faircloth, B.C.7
Nabholz, B.8
Howard, J.T.9
Suh, A.10
-
27
-
-
84905465421
-
A high-density linkage map enables a second-generation collared flycatcher genome assembly and reveals the patterns of avian recombination rate variation and chromosomal evolution
-
Kawakami T, Smeds L, BackströmN, Husby A, QvarnströmA, Mugal CF, Olason P, Ellegren H. 2014. A high-density linkage map enables a second-generation collared flycatcher genome assembly and reveals the patterns of avian recombination rate variation and chromosomal evolution. Mol Ecol. 23:4035-4058
-
(2014)
Mol Ecol
, vol.23
, pp. 4035-4058
-
-
Kawakami, T.1
Smeds, L.2
Backström, N.3
Husby, A.4
Qvarnström, A.5
Mugal, C.F.6
Olason, P.7
Ellegren, H.8
-
28
-
-
15744388330
-
Evidence for widespread degradation of gene control regions in hominid genomes
-
Keightley PD, Lercher MJ, Eyre-Walker A. 2005. Evidence for widespread degradation of gene control regions in hominid genomes. PLoS Biol. 3:e42
-
(2005)
PLoS Biol
, vol.3
, pp. e42
-
-
Keightley, P.D.1
Lercher, M.J.2
Eyre-Walker, A.3
-
30
-
-
84873574503
-
Interaction between selection and biased gene conversion in mammalian protein-coding sequence evolution revealed by a phylogenetic covariance analysis
-
Lartillot N. 2013. Interaction between selection and biased gene conversion in mammalian protein-coding sequence evolution revealed by a phylogenetic covariance analysis.Mol Biol Evol. 30:356-368
-
(2013)
Mol Biol Evol
, vol.30
, pp. 356-368
-
-
Lartillot, N.1
-
31
-
-
84861654988
-
Joint reconstruction of divergence times and life-history evolution in placental mammals using a phylogenetic covariance model
-
Lartillot N, Delsuc F. 2012. Joint reconstruction of divergence times and life-history evolution in placental mammals using a phylogenetic covariance model. Evolution 66:1773-1787
-
(2012)
Evolution
, vol.66
, pp. 1773-1787
-
-
Lartillot, N.1
Delsuc, F.2
-
32
-
-
78650493648
-
A phylogenetic model for investigating correlated evolution of substitution rates and continuous phenotypic characters
-
Lartillot N, Poujol R. 2011. A phylogenetic model for investigating correlated evolution of substitution rates and continuous phenotypic characters. Mol Biol Evol. 28:729-744
-
(2011)
Mol Biol Evol
, vol.28
, pp. 729-744
-
-
Lartillot, N.1
Poujol, R.2
-
33
-
-
67649884743
-
Fast and accurate short read alignment with Burrows-Wheeler transform
-
Li H, Durbin R. 2009. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25:1754-1760
-
(2009)
Bioinformatics
, vol.25
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
-
34
-
-
79960914105
-
Inference of human population history from whole genome sequence of a single individual
-
Li H, Durbin R. 2011. Inference of human population history from whole genome sequence of a single individual. Nature 475:493-496
-
(2011)
Nature
, vol.475
, pp. 493-496
-
-
Li, H.1
Durbin, R.2
-
35
-
-
0141519279
-
OrthoMCL: Identification of ortholog groups for eukaryotic genomes
-
Li L, Stoeckert CJ, Roos DS. 2003. OrthoMCL: identification of ortholog groups for eukaryotic genomes. Genome Res. 13:2178-2189
-
(2003)
Genome Res
, vol.13
, pp. 2178-2189
-
-
Li, L.1
Stoeckert, C.J.2
Roos, D.S.3
-
36
-
-
84871167801
-
The determinants of the molecular substitution process in turtles
-
Lourenço JM, Glémin S, Chiari Y, Galtier N. 2013. The determinants of the molecular substitution process in turtles. J Evol Biol. 26:38-50
-
(2013)
J Evol Biol
, vol.26
, pp. 38-50
-
-
Lourenço, J.M.1
Glémin, S.2
Chiari, Y.3
Galtier, N.4
-
38
-
-
79956367248
-
Crocodilian phylogeny inferred from twelve mitochondrial protein-coding genes, with new complete mitochondrial genomic sequences for Crocodylus acutus and Crocodylus novaeguineae
-
Man Z, Yishu W, Peng Y, Xiaobing W. 2011. Crocodilian phylogeny inferred from twelve mitochondrial protein-coding genes, with new complete mitochondrial genomic sequences for Crocodylus acutus and Crocodylus novaeguineae. Mol Phylogenet Evol. 60:62-67
-
(2011)
Mol Phylogenet Evol
, vol.60
, pp. 62-67
-
-
Man, Z.1
Yishu, W.2
Peng, Y.3
Xiaobing, W.4
-
39
-
-
77956295988
-
The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
-
McKenna A, Hanna M, Banks E, Sivachenko A, Cibulskis K, Kernytsky A, Garimella K, Altshuler D, Gabriel S, Daly M, et al. 2010. The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. Genome Res. 20:1297-1303
-
(2010)
Genome Res
, vol.20
, pp. 1297-1303
-
-
McKenna, A.1
Hanna, M.2
Banks, E.3
Sivachenko, A.4
Cibulskis, K.5
Kernytsky, A.6
Garimella, K.7
Altshuler, D.8
Gabriel, S.9
Daly, M.10
-
40
-
-
80055070300
-
Impacts of the cretaceous terrestrial revolution and KPg extinction onmammal diversification
-
Meredith RW, Janec JE, Gatesy J, Ryder OA, Fisher CA, Teeling EC, Goodbla A, Eizirik E, Stadler T, Rabosky DL, et al. 2011. Impacts of the cretaceous terrestrial revolution and KPg extinction onmammal diversification. Science 334:521-524
-
(2011)
Science
, vol.334
, pp. 521-524
-
-
Meredith, R.W.1
Janec, J.E.2
Gatesy, J.3
Ryder, O.A.4
Fisher, C.A.5
Teeling, E.C.6
Goodbla, A.7
Eizirik, E.8
Stadler, T.9
Rabosky, D.L.10
-
42
-
-
84867715558
-
Estimating divergence dates and evaluating dating methods using phylogenomic and mitochondrial data in squamate reptiles
-
Mulcahy DG, Noonan BP, Moss T, Townsend TM, Reeder TW, Sites JW, Wiens JJ. 2012. Estimating divergence dates and evaluating dating methods using phylogenomic and mitochondrial data in squamate reptiles. Mol Phylogenet Evol. 65:974-991
-
(2012)
Mol Phylogenet Evol
, vol.65
, pp. 974-991
-
-
Mulcahy, D.G.1
Noonan, B.P.2
Moss, T.3
Townsend, T.M.4
Reeder, T.W.5
Sites, J.W.6
Wiens, J.J.7
-
43
-
-
72149131462
-
Bats and birds: Exceptional longevity despite high metabolic rates
-
Munshi-South J, Wilkinson GS. 2010. Bats and birds: exceptional longevity despite high metabolic rates. Ageing Res Rev. 9:12-19
-
(2010)
Ageing Res Rev
, vol.9
, pp. 12-19
-
-
Munshi-South, J.1
Wilkinson, G.S.2
-
44
-
-
79961074078
-
Dynamic evolution of base composition: Causes and consequences in avian phylogenomics
-
Nabholz B, Künstner A, Wang R, Jarvis ED, Ellegren H. 2011. Dynamic evolution of base composition: causes and consequences in avian phylogenomics.Mol Biol Evol. 28:2197-2210
-
(2011)
Mol Biol Evol
, vol.28
, pp. 2197-2210
-
-
Nabholz, B.1
Künstner, A.2
Wang, R.3
Jarvis, E.D.4
Ellegren, H.5
-
45
-
-
84891164666
-
Reconstructing the phylogenetic history of long-term effective population size and life-history traits using patterns of amino acid replacement in mitochondrial genomes of mammals and birds
-
Nabholz B, Uwimana N, Lartillot N. 2013. Reconstructing the phylogenetic history of long-term effective population size and life-history traits using patterns of amino acid replacement in mitochondrial genomes of mammals and birds. Genome Biol Evol. 5:1273-1290
-
(2013)
Genome Biol Evol
, vol.5
, pp. 1273-1290
-
-
Nabholz, B.1
Uwimana, N.2
Lartillot, N.3
-
46
-
-
84929607193
-
Temporal dynamics of avian populations during Pleistocene revealed by whole-genome sequences
-
Nadachowska-Brzyska K, Li C, Smeds L, Zhang G, Ellegren H. 2015. Temporal dynamics of avian populations during Pleistocene revealed by whole-genome sequences. Curr Biol. 25:1375-1380
-
(2015)
Curr Biol
, vol.25
, pp. 1375-1380
-
-
Nadachowska-Brzyska, K.1
Li, C.2
Smeds, L.3
Zhang, G.4
Ellegren, H.5
-
47
-
-
0026021583
-
The relationship between abundance and body size in British birds
-
Nee S, Read A, Greenwood J, Harvey P. 1991. The relationship between abundance and body size in British birds. Nature 351:312-313
-
(1991)
Nature
, vol.351
, pp. 312-313
-
-
Nee, S.1
Read, A.2
Greenwood, J.3
Harvey, P.4
-
48
-
-
0022507362
-
Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions
-
NeiM, Gojobori T. 1986. Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions. Mol Biol Evol. 3:418-426
-
(1986)
Mol Biol Evol
, vol.3
, pp. 418-426
-
-
Nei, M.1
Gojobori, T.2
-
49
-
-
38049174461
-
Life-history traits drive the evolutionary rates of mammalian coding and noncoding genomic elements
-
Nikolaev SI, Montoya-Burgos JI, Popadin K, Parand L, Margulies EH, Antonarakis SE. 2007. Life-history traits drive the evolutionary rates of mammalian coding and noncoding genomic elements. Proc Natl Acad Sci U S A. 104:20443-20448
-
(2007)
Proc Natl Acad Sci U S A
, vol.104
, pp. 20443-20448
-
-
Nikolaev, S.I.1
Montoya-Burgos, J.I.2
Popadin, K.3
Parand, L.4
Margulies, E.H.5
Antonarakis, S.E.6
-
50
-
-
0023477438
-
Very slightly deleterious mutations and the molecular clock
-
Ohta T. 1987. Very slightly deleterious mutations and the molecular clock. J Mol Evol. 26:1-6
-
(1987)
J Mol Evol
, vol.26
, pp. 1-6
-
-
Ohta, T.1
-
51
-
-
1042304216
-
APE:analysesof phylogenetics and evolution in r language
-
Paradis E, Claude J, Strimmer K. 2004.APE:Analysesof Phylogenetics and Evolution in R language. Bioinformatics 20:289-290
-
(2004)
Bioinformatics
, vol.20
, pp. 289-290
-
-
Paradis, E.1
Claude, J.2
Strimmer, K.3
-
52
-
-
84859552481
-
Comparative RNA sequencing reveals substantial genetic variation in endangered primates
-
Perry GH,Melsted P, Marioni JC, Wang Y, Bainer R, Pickrell JK,Michelini K, Zehr S, Yoder AD, Stephens M, et al. 2012. Comparative RNA sequencing reveals substantial genetic variation in endangered primates. Genome Res. 22:602-610
-
(2012)
Genome Res
, vol.22
, pp. 602-610
-
-
Perry, G.H.1
Melsted, P.2
Marioni, J.C.3
Wang, Y.4
Bainer, R.5
Pickrell, J.K.6
Michelini, K.7
Zehr, S.8
Yoder, A.D.9
Stephens, M.10
-
53
-
-
34548082528
-
Accumulation of slightly deleterious mutations in mitochondrial protein-coding genes of large versus small mammals
-
Popadin K, Polishchuk LV, Mamirova L, Knorre D, Gunbin K. 2007. Accumulation of slightly deleterious mutations in mitochondrial protein-coding genes of large versus small mammals. Proc Natl Acad Sci U S A. 104:13390-13395
-
(2007)
Proc Natl Acad Sci U S A
, vol.104
, pp. 13390-13395
-
-
Popadin, K.1
Polishchuk, L.V.2
Mamirova, L.3
Knorre, D.4
Gunbin, K.5
-
54
-
-
84944911288
-
A comprehensive phylogeny of birds (Aves) using targeted next-generation DNA sequencing
-
Prum RO, Berv JS, Dornburg A, Field DJ, Townsend JP, Lemmon EM, Lemmon AR. 2015. A comprehensive phylogeny of birds (Aves) using targeted next-generation DNA sequencing. Nature 526:11-13
-
(2015)
Nature
, vol.526
, pp. 11-13
-
-
Prum, R.O.1
Berv, J.S.2
Dornburg, A.3
Field, D.J.4
Townsend, J.P.5
Lemmon, E.M.6
Lemmon, A.R.7
-
55
-
-
84876805079
-
A phylogeny and revised classification of Squamata, including 4161 species of lizards and snakes
-
Pyron RA, Burbrink FT, Wiens JJ. 2013. A phylogeny and revised classification of Squamata, including 4161 species of lizards and snakes. BMC Evol Biol. 13:1-53
-
(2013)
BMC Evol Biol
, vol.13
, pp. 1-53
-
-
Pyron, R.A.1
Burbrink, F.T.2
Wiens, J.J.3
-
56
-
-
80052824121
-
MACSE: Multiple alignment of coding sequences accounting for frameshifts and stop codons
-
Ranwez V, Harispe S, Delsuc F, Douzery EJP. 2011. MACSE: Multiple Alignment of Coding SEquences accounting for frameshifts and stop codons. PLoS One 6:e22594
-
(2011)
PLoS One
, vol.6
, pp. e22594
-
-
Ranwez, V.1
Harispe, S.2
Delsuc, F.3
Douzery, E.J.P.4
-
57
-
-
77956463212
-
Detecting positive selection within genomes: The problem of biased gene conversion
-
Ratnakumar A, Mousset S, Glémin S, Berglund J, Galtier N, Duret L, Webster MT. 2010. Detecting positive selection within genomes: the problem of biased gene conversion. Philos Trans R Soc Lond B Biol Sci. 365:2571-2580
-
(2010)
Philos Trans R Soc Lond B Biol Sci
, vol.365
, pp. 2571-2580
-
-
Ratnakumar, A.1
Mousset, S.2
Glémin, S.3
Berglund, J.4
Galtier, N.5
Duret, L.6
Webster, M.T.7
-
58
-
-
84858975960
-
Fast and robust characterization of time-heterogeneous sequence evolutionary processes using substitution mapping
-
Romiguier J, Figuet E, Galtier N, Douzery EJP, Boussau B, Dutheil JY, Ranwez V. 2012. Fast and robust characterization of time-heterogeneous sequence evolutionary processes using substitution mapping. PLoS One 7:e33852
-
(2012)
PLoS One
, vol.7
, pp. e33852
-
-
Romiguier, J.1
Figuet, E.2
Galtier, N.3
Douzery, E.J.P.4
Boussau, B.5
Dutheil, J.Y.6
Ranwez, V.7
-
59
-
-
84922016356
-
Comparative population genomics in animals uncovers the determinants of genetic diversity
-
Romiguier J, Gayral P, Ballenghien M, Bernard A, Cahais V, Chenuil A, Chiari Y, Dernat R, Duret L, Faivre N, et al. 2014. Comparative population genomics in animals uncovers the determinants of genetic diversity. Nature 515:261-263
-
(2014)
Nature
, vol.515
, pp. 261-263
-
-
Romiguier, J.1
Gayral, P.2
Ballenghien, M.3
Bernard, A.4
Cahais, V.5
Chenuil, A.6
Chiari, Y.7
Dernat, R.8
Duret, L.9
Faivre, N.10
-
60
-
-
77955136814
-
Contrasting GCcontent dynamics across 33 mammalian genomes: Relationship with life-history traits and chromosome sizes
-
Romiguier J, Ranwez V, Douzery EJP, Galtier N. 2010. Contrasting GCcontent dynamics across 33 mammalian genomes: relationship with life-history traits and chromosome sizes. Genome Res. 20:1001-1009
-
(2010)
Genome Res
, vol.20
, pp. 1001-1009
-
-
Romiguier, J.1
Ranwez, V.2
Douzery, E.J.P.3
Galtier, N.4
-
61
-
-
84871839565
-
Genomic evidence for large, long-lived ancestors to placental mammals
-
Romiguier J, Ranwez V, Douzery EJP, Galtier N. 2013. Genomic evidence for large, long-lived ancestors to placental mammals. Mol Biol Evol. 30:5-13
-
(2013)
Mol Biol Evol
, vol.30
, pp. 5-13
-
-
Romiguier, J.1
Ranwez, V.2
Douzery, E.J.P.3
Galtier, N.4
-
62
-
-
18844420035
-
Detecting site-specific physicochemical selective pressures: Applications to the Class i HLA of the human major histocompatibility complex and the SRK of the plant sporophytic self-incompatibility system
-
Sainudiin R, Wong WSW, Yogeeswaran K, Nasrallah JB, Yang Z, Nielsen R. 2005. Detecting site-specific physicochemical selective pressures: applications to the Class I HLA of the human major histocompatibility complex and the SRK of the plant sporophytic self-incompatibility system. J Mol Evol. 60:315-326
-
(2005)
J Mol Evol
, vol.60
, pp. 315-326
-
-
Sainudiin, R.1
Wong, W.S.W.2
Yogeeswaran, K.3
Nasrallah, J.B.4
Yang, Z.5
Nielsen, R.6
-
63
-
-
30344444487
-
Life-history evolution in reptiles
-
Shine R. 2005. Life-history evolution in reptiles. Annu Rev Ecol Evol Syst. 36:23-46
-
(2005)
Annu Rev Ecol Evol Syst
, vol.36
, pp. 23-46
-
-
Shine, R.1
-
64
-
-
0142075815
-
Are radical and conservative substitution rates useful statistics in molecular evolution?
-
Smith NGC. 2003. Are radical and conservative substitution rates useful statistics in molecular evolution? J Mol Evol. 57:467-478
-
(2003)
J Mol Evol
, vol.57
, pp. 467-478
-
-
Smith, N.G.C.1
-
65
-
-
84866370159
-
The population genomics of a fast evolver: High levels of diversity, functional constraint, and molecular adaptation in the tunicate Ciona intestinalis
-
Tsagkogeorga G, Cahais V, Galtier N. 2012. The population genomics of a fast evolver: high levels of diversity, functional constraint, and molecular adaptation in the tunicate Ciona intestinalis. Genome Biol Evol. 4:740-749
-
(2012)
Genome Biol Evol
, vol.4
, pp. 740-749
-
-
Tsagkogeorga, G.1
Cahais, V.2
Galtier, N.3
-
66
-
-
84996563564
-
Evidence for GC-biased gene conversion as a driver of between-lineage differences in avian base composition
-
Weber CC, Boussau B, Romiguier J, Jarvis ED, Ellegren H. 2014. Evidence for GC-biased gene conversion as a driver of between-lineage differences in avian base composition. Genome Biol. 15:1-16
-
(2014)
Genome Biol
, vol.15
, pp. 1-16
-
-
Weber, C.C.1
Boussau, B.2
Romiguier, J.3
Jarvis, E.D.4
Ellegren, H.5
-
67
-
-
84987900198
-
KR/KC but not dN/dS correlates positively with body mass in birds, raising implications for inferring lineage-specific selection
-
Weber CC, Nabholz B, Romiguier J, Ellegren H. 2014. KR/KC but not dN/dS correlates positively with body mass in birds, raising implications for inferring lineage-specific selection. Genome Biol. 15:1-13
-
(2014)
Genome Biol
, vol.15
, pp. 1-13
-
-
Weber, C.C.1
Nabholz, B.2
Romiguier, J.3
Ellegren, H.4
-
68
-
-
33646884615
-
Strong regional biases in nucleotide substitution in the chicken genome
-
Webster MT, Axelsson E, Ellegren H. 2006. Strong regional biases in nucleotide substitution in the chicken genome. Mol Biol Evol. 23:1203-1216
-
(2006)
Mol Biol Evol
, vol.23
, pp. 1203-1216
-
-
Webster, M.T.1
Axelsson, E.2
Ellegren, H.3
-
69
-
-
1242293743
-
Fixation biases affecting human SNPs
-
Webster MT, Smith NGC. 2004. Fixation biases affecting human SNPs. Trends Genet. 20:116-122
-
(2004)
Trends Genet
, vol.20
, pp. 116-122
-
-
Webster, M.T.1
Smith, N.G.C.2
-
70
-
-
19544384915
-
Male-driven biased gene conversion governs the evolution of base composition in human alu repeats
-
WebsterMT, Smith NGC, Hultin-Rosenberg L, Arndt PF, Ellegren H. 2005. Male-driven biased gene conversion governs the evolution of base composition in human alu repeats. Mol Biol Evol. 22:1468-1474
-
(2005)
Mol Biol Evol
, vol.22
, pp. 1468-1474
-
-
Webster, M.T.1
Smith, N.G.C.2
Hultin-Rosenberg, L.3
Arndt, P.F.4
Ellegren, H.5
-
72
-
-
84869787270
-
Resolving the phylogeny of lizards and snakes (Squamata) with extensive sampling of genes and species
-
Wiens JJ, Hutter CR,Mulcahy DG, Noonan BP, Townsend TM, Sites JWJr, Reeder TW. 2012. Resolving the phylogeny of lizards and snakes (Squamata) with extensive sampling of genes and species. Biol Lett. 8:1043-1046
-
(2012)
Biol Lett
, vol.8
, pp. 1043-1046
-
-
Wiens, J.J.1
Hutter, C.R.2
Mulcahy, D.G.3
Noonan, B.P.4
Townsend, T.M.5
Sites, J.W.6
Reeder, T.W.7
-
73
-
-
84931289173
-
Why selection might be stronger when populations are small: Intron size and density predict within and betweenspecies usage of exonic splice associated cis-motifs
-
Wu X, Hurst LD. 2015. Why selection might be stronger when populations are small: intron size and density predict within and betweenspecies usage of exonic splice associated cis-motifs. Mol Biol Evol. 32:1847-1861
-
(2015)
Mol Biol Evol
, vol.32
, pp. 1847-1861
-
-
Wu, X.1
Hurst, L.D.2
-
74
-
-
34547803197
-
PAML 4: Phylogenetic analysis by maximum likelihood
-
Yang Z. 2007. PAML 4: phylogenetic analysis by maximum likelihood. Mol Biol Evol. 24:1586-1591
-
(2007)
Mol Biol Evol
, vol.24
, pp. 1586-1591
-
-
Yang, Z.1
-
75
-
-
84923112740
-
Comparative genomic data of the Avian Phylogenomics Project
-
Zhang G, Li B, Li C, Gilbert M, Jarvis ED, Wang J. 2014. Comparative genomic data of the Avian Phylogenomics Project. Gigascience 3:1-8
-
(2014)
Gigascience
, vol.3
, pp. 1-8
-
-
Zhang, G.1
Li, B.2
Li, C.3
Gilbert, M.4
Jarvis, E.D.5
Wang, J.6
-
76
-
-
84917678595
-
Comparative genomics reveals insights into avian genome evolution and adaptation
-
Zhang G, Li C, Li Q, Li B, Larkin DM, Lee C, Storz JF, Antunes A, Greenwold MJ, Meredith RW, et al. 2014. Comparative genomics reveals insights into avian genome evolution and adaptation. Science 346:1311-1320
-
(2014)
Science
, vol.346
, pp. 1311-1320
-
-
Zhang, G.1
Li, C.2
Li, Q.3
Li, B.4
Larkin, D.M.5
Lee, C.6
Storz, J.F.7
Antunes, A.8
Greenwold, M.J.9
Meredith, R.W.10
-
77
-
-
0033921902
-
Rates of conservative and radical nonsynonymous nucleotide substitutions in mammalian nuclear genes
-
Zhang J. 2000. Rates of conservative and radical nonsynonymous nucleotide substitutions in mammalian nuclear genes. J Mol Evol. 50:56-68
-
(2000)
J Mol Evol
, vol.50
, pp. 56-68
-
-
Zhang, J.1
|