-
1
-
-
34547129847
-
Development of the human infant intestinal microbiota
-
Palmer, C., Bik, E. M., DiGiulio, D. B., Relman, D. A., Brown, P. O. Development of the human infant intestinal microbiota. PLos Biol 5, e177 (2007).
-
(2007)
PLos Biol
, vol.5
, pp. e177
-
-
Palmer, C.1
Bik, E.M.2
DiGiulio, D.B.3
Relman, D.A.4
Brown, P.O.5
-
2
-
-
84929297936
-
Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life
-
Backhed, F. et al. Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life. Cell Host Microbe 17, 852 (2015).
-
(2015)
Cell Host Microbe
, vol.17
, pp. 852
-
-
Backhed, F.1
-
3
-
-
62449165965
-
Altered early infant gut microbiota in children developing allergy up to 5 years of age
-
Sjogren, Y. M., Jenmalm, M. C., Bottcher, M. F., Bjorksten, B., Sverremark-Ekstrom, E. Altered early infant gut microbiota in children developing allergy up to 5 years of age. Clin Exp Allergy 39, 518-526 (2009).
-
(2009)
Clin Exp Allergy
, vol.39
, pp. 518-526
-
-
Sjogren, Y.M.1
Jenmalm, M.C.2
Bottcher, M.F.3
Bjorksten, B.4
Sverremark-Ekstrom, E.5
-
4
-
-
58749112734
-
A core gut microbiome in obese and lean twins
-
Turnbaugh, P. J. et al. A core gut microbiome in obese and lean twins. Nature 457, 480-484 (2009).
-
(2009)
Nature
, vol.457
, pp. 480-484
-
-
Turnbaugh, P.J.1
-
5
-
-
84878506087
-
Novel developmental analyses identify longitudinal patterns of early gut microbiota that affect infant growth
-
White, R. A. et al. Novel developmental analyses identify longitudinal patterns of early gut microbiota that affect infant growth. PLos Comput Biol 9, e1003042 (2013).
-
(2013)
PLos Comput Biol
, vol.9
, pp. e1003042
-
-
White, R.A.1
-
6
-
-
84903134830
-
Persistent gut microbiota immaturity in malnourished Bangladeshi children
-
Subramanian, S. et al. Persistent gut microbiota immaturity in malnourished Bangladeshi children. Nature 510, 417-421 (2014).
-
(2014)
Nature
, vol.510
, pp. 417-421
-
-
Subramanian, S.1
-
7
-
-
77953231134
-
Establishment and development of lactic acid bacteria and bifidobacteria microbiota in breast-milk and the infant gut
-
Solis, G., de Los Reyes-Gavilan, C. G., Fernandez, N., Margolles, A., Gueimonde, M. Establishment and development of lactic acid bacteria and bifidobacteria microbiota in breast-milk and the infant gut. Anaerobe 16, 307-310 (2010).
-
(2010)
Anaerobe
, vol.16
, pp. 307-310
-
-
Solis, G.1
De Los Reyes-Gavilan, C.G.2
Fernandez, N.3
Margolles, A.4
Gueimonde, M.5
-
8
-
-
84862770598
-
Interaction between the intestinal microbiota and host in Clostridium difficile colonization resistance
-
Britton, R. A., Young, V. B. Interaction between the intestinal microbiota and host in Clostridium difficile colonization resistance. Trends Microbiol 20, 313-319 (2012).
-
(2012)
Trends Microbiol
, vol.20
, pp. 313-319
-
-
Britton, R.A.1
Young, V.B.2
-
9
-
-
58449119188
-
Establishment of the gut microbiota in Western infants
-
Adlerberth, I., Wold, A. E. Establishment of the gut microbiota in Western infants. Acta Paediatr 98, 229-238 (2009).
-
(2009)
Acta Paediatr
, vol.98
, pp. 229-238
-
-
Adlerberth, I.1
Wold, A.E.2
-
10
-
-
72449145776
-
Influence of early gut microbiota on the maturation of childhood mucosal and systemic immune responses
-
Sjogren, Y. M. et al. Influence of early gut microbiota on the maturation of childhood mucosal and systemic immune responses. Clin Exp Allergy 39, 1842-1851 (2009).
-
(2009)
Clin Exp Allergy
, vol.39
, pp. 1842-1851
-
-
Sjogren, Y.M.1
-
11
-
-
79952763661
-
Succession of microbial consortia in the developing infant gut microbiome
-
Koenig, J. E. et al. Succession of microbial consortia in the developing infant gut microbiome. Proc Natl Acad Sci USA 108 Suppl 1, 4578-4585 (2011).
-
(2011)
Proc Natl Acad Sci USA 108 Suppl
, vol.1
, pp. 4578-4585
-
-
Koenig, J.E.1
-
12
-
-
76349092715
-
Convergent temporal dynamics of the human infant gut microbiota
-
Trosvik, P., Stenseth, N. C., Rudi, K. Convergent temporal dynamics of the human infant gut microbiota. ISME J 4, 151-158 (2010).
-
(2010)
ISME J
, vol.4
, pp. 151-158
-
-
Trosvik, P.1
Stenseth, N.C.2
Rudi, K.3
-
13
-
-
84867177603
-
Characterization of the fecal microbiota using highthroughput sequencing reveals a stable microbial community during storage
-
Carroll, I. M., Ringel-Kulka, T., Siddle, J. P., Klaenhammer, T. R., Ringel, Y. Characterization of the fecal microbiota using highthroughput sequencing reveals a stable microbial community during storage. PLos One 7, e46953 (2012).
-
(2012)
PLos One
, vol.7
, pp. e46953
-
-
Carroll, I.M.1
Ringel-Kulka, T.2
Siddle, J.P.3
Klaenhammer, T.R.4
Ringel, Y.5
-
14
-
-
84929119983
-
The effects of freezing on faecal microbiota as determined using MiSeq sequencing and culture-based investigations
-
Fouhy, F. et al. The effects of freezing on faecal microbiota as determined using MiSeq sequencing and culture-based investigations. PLos One 10, e0119355 (2015).
-
(2015)
PLos One
, vol.10
, pp. e0119355
-
-
Fouhy, F.1
-
15
-
-
84881128137
-
Investigating the impact of storage conditions on microbial community composition in soil samples
-
Rublin B. E. R. et al. Investigating the impact of storage conditions on microbial community composition in soil samples. PLos One 8, e70460 (2013).
-
(2013)
PLos One
, vol.8
, pp. e70460
-
-
Rublin, B.E.R.1
-
16
-
-
38049080602
-
Fecal collection, ambient preservation, and DNA extraction for PCR amplification of bacterial and human markers from human feces
-
Nechvatal, J. M. et al. Fecal collection, ambient preservation, and DNA extraction for PCR amplification of bacterial and human markers from human feces. J Microbiol Methods 72, 124-132 (2008).
-
(2008)
J Microbiol Methods
, vol.72
, pp. 124-132
-
-
Nechvatal, J.M.1
-
17
-
-
85056036546
-
Influence of fecal sample storage on bacterial community diversity
-
Roesch, L. F. et al. Influence of fecal sample storage on bacterial community diversity. Open Microbiol J 3, 40-46 (2009).
-
(2009)
Open Microbiol J
, vol.3
, pp. 40-46
-
-
Roesch, L.F.1
-
18
-
-
84864344549
-
Storage conditions of intestinal microbiota matter in metagenomic analysis
-
Cardona, S. et al. Storage conditions of intestinal microbiota matter in metagenomic analysis. BMC Microbiol 12, 158 (2012).
-
(2012)
BMC Microbiol
, vol.12
, pp. 158
-
-
Cardona, S.1
-
19
-
-
84905216354
-
Time between collection and storage significantly influences bacterial sequence composition in sputum samples from cystic fibrosis respiratory infections
-
Cuthbertson, L. et al. Time between collection and storage significantly influences bacterial sequence composition in sputum samples from cystic fibrosis respiratory infections. J Clin Microbiol 52, 3011-3016 (2014).
-
(2014)
J Clin Microbiol
, vol.52
, pp. 3011-3016
-
-
Cuthbertson, L.1
-
20
-
-
84935022171
-
The effect of sampling and storage on the fecal microbiota composition in healthy and diseased subjects
-
Tedjo, D. I. et al. The effect of sampling and storage on the fecal microbiota composition in healthy and diseased subjects. PLos One 10, e0126685 (2015).
-
(2015)
PLos One
, vol.10
, pp. e0126685
-
-
Tedjo, D.I.1
-
21
-
-
77950543296
-
The analysis of oral microbial communities of wild-type and toll-like receptor 2-deficient mice using a 454 GS FLX Titanium pyrosequencer
-
Chun, J., Kim, K. Y., Lee, J. H., Choi, Y. The analysis of oral microbial communities of wild-type and toll-like receptor 2-deficient mice using a 454 GS FLX Titanium pyrosequencer. BMC Microbiol 10, 101 (2010).
-
(2010)
BMC Microbiol
, vol.10
, pp. 101
-
-
Chun, J.1
Kim, K.Y.2
Lee, J.H.3
Choi, Y.4
-
22
-
-
69549112742
-
Accurate determination of microbial diversity from 454 pyrosequencing data
-
Quince, C. et al. Accurate determination of microbial diversity from 454 pyrosequencing data. Nat Methods 6, 639-641 (2009).
-
(2009)
Nat Methods
, vol.6
, pp. 639-641
-
-
Quince, C.1
-
23
-
-
72949107142
-
Introducing mothur: Open-source, platform-independent, community-supported software for describing and comparing microbial communities
-
Schloss, P. D. et al. Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol 75, 7537-7541 (2009).
-
(2009)
Appl Environ Microbiol
, vol.75
, pp. 7537-7541
-
-
Schloss, P.D.1
-
24
-
-
77952243141
-
QIIME allows analysis of high-throughput community sequencing data
-
Caporaso, J. G. et al. QIIME allows analysis of high-throughput community sequencing data. Nat Methods 7, 335-336 (2010).
-
(2010)
Nat Methods
, vol.7
, pp. 335-336
-
-
Caporaso, J.G.1
-
25
-
-
77957244650
-
Search and clustering orders of magnitude faster than BLAST
-
Edgar, R. C. Search and clustering orders of magnitude faster than BLAST. Bioinformatics 26, 2460-2461 (2010).
-
(2010)
Bioinformatics
, vol.26
, pp. 2460-2461
-
-
Edgar, R.C.1
-
26
-
-
79952006773
-
Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons
-
Haas, B. J. et al. Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons. Genome Res 21, 494-504 (2011).
-
(2011)
Genome Res
, vol.21
, pp. 494-504
-
-
Haas, B.J.1
-
27
-
-
34548293679
-
Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
-
Wang, Q., Garrity, G. M., Tiedje, J. M., Cole, J. R. Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl Environ Microbiol 73, 5261-5267 (2007).
-
(2007)
Appl Environ Microbiol
, vol.73
, pp. 5261-5267
-
-
Wang, Q.1
Garrity, G.M.2
Tiedje, J.M.3
Cole, J.R.4
-
28
-
-
1042304216
-
APE: Analyses of Phylogenetics and Evolution in R language
-
Paradis, E., Claude, J., Strimmer, K. APE: Analyses of Phylogenetics and Evolution in R language. Bioinformatics 20, 289-290 (2004).
-
(2004)
Bioinformatics
, vol.20
, pp. 289-290
-
-
Paradis, E.1
Claude, J.2
Strimmer, K.3
-
29
-
-
37649024043
-
The ade4 package: Implementing the duality diagram for ecologists
-
Dray, S., Dufour, A. B. The ade4 package: implementing the duality diagram for ecologists. J Stat Softw 22, 1-20 (2007).
-
(2007)
J Stat Softw
, vol.22
, pp. 1-20
-
-
Dray, S.1
Dufour, A.B.2
-
30
-
-
33845900991
-
Multivariate regression analysis of distance matrices for testing associations between gene expression patterns and related variables
-
Zapala, M. A., Schork, N. J. Multivariate regression analysis of distance matrices for testing associations between gene expression patterns and related variables. Proc Natl Acad Sci USA 103, 19430-19435 (2006).
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 19430-19435
-
-
Zapala, M.A.1
Schork, N.J.2
-
31
-
-
84876715756
-
Using QIIME to analyze 16S rRNA gene sequences from microbial communities
-
Kuczynski, J. et al. Using QIIME to analyze 16S rRNA gene sequences from microbial communities. Curr Protoc Microbiol Chapter 1, Unit 1E 5 (2012).
-
(2012)
Curr Protoc Microbiol Chapter 1, Unit 1E
, vol.5
-
-
Kuczynski, J.1
-
32
-
-
77951941062
-
Effect of storage conditions on the assessment of bacterial community structure in soil and human-associated samples
-
Lauber, C. L., Zhou, N., Gordon, J. I., Knight, R., Fierer, N. Effect of storage conditions on the assessment of bacterial community structure in soil and human-associated samples. FEMS Microbiol Lett 307, 80-86 (2010).
-
(2010)
FEMS Microbiol Lett
, vol.307
, pp. 80-86
-
-
Lauber, C.L.1
Zhou, N.2
Gordon, J.I.3
Knight, R.4
Fierer, N.5
-
33
-
-
77950251400
-
A human gut microbial gene catalogue established by metagenomic sequencing
-
Qin, J. et al. A human gut microbial gene catalogue established by metagenomic sequencing. Nature 464, 59-65 (2010).
-
(2010)
Nature
, vol.464
, pp. 59-65
-
-
Qin, J.1
|