-
1
-
-
84924690678
-
Gut microbiome development along the colorectal adenoma-carcinoma sequence
-
Feng Q, Liang S, Jia H, Stadlmayr A, Tang L, Lan Z, et al. Gut microbiome development along the colorectal adenoma-carcinoma sequence. Nat Commun 2015;6:6528.
-
(2015)
Nat Commun
, vol.6
, pp. 6528
-
-
Feng, Q.1
Liang, S.2
Jia, H.3
Stadlmayr, A.4
Tang, L.5
Lan, Z.6
-
2
-
-
84859812538
-
Promotion of hepatocellular carcinoma by the intestinal microbiota and TLR4
-
Dapito DH, Mencin A, Gwak GY, Pradere JP, Jang MK, Mederacke I, et al. Promotion of hepatocellular carcinoma by the intestinal microbiota and TLR4. Cancer Cell 2012;21:504-16.
-
(2012)
Cancer Cell
, vol.21
, pp. 504-516
-
-
Dapito, D.H.1
Mencin, A.2
Gwak, G.Y.3
Pradere, J.P.4
Jang, M.K.5
Mederacke, I.6
-
3
-
-
84893428147
-
Emerging roles of the microbiome in cancer
-
Bultman SJ. Emerging roles of the microbiome in cancer. Carcinogenesis 2014;35:249-55.
-
(2014)
Carcinogenesis
, vol.35
, pp. 249-255
-
-
Bultman, S.J.1
-
4
-
-
84986575558
-
The role of the cutaneous microbiome in skin cancer: Lessons learned from the gut
-
Yu Y, Champer J, Beynet D, Kim J, Friedman AJ. The role of the cutaneous microbiome in skin cancer: lessons learned from the gut. J Drugs Dermatol 2015;14:461-5.
-
(2015)
J Drugs Dermatol
, vol.14
, pp. 461-465
-
-
Yu, Y.1
Champer, J.2
Beynet, D.3
Kim, J.4
Friedman, A.J.5
-
5
-
-
84863582087
-
Infection-induced colitis in mice causes dynamic and tissue-specific changes in stress response and DNA damage leading to colon cancer
-
Mangerich A, Knutson CG, Parry NM, Muthupalani S, Ye W, Prestwich E, et al. Infection-induced colitis in mice causes dynamic and tissue-specific changes in stress response and DNA damage leading to colon cancer. Proc Natl Acad Sci USA 2012;109:E1820-9.
-
(2012)
Proc Natl Acad Sci USA
, vol.109
, pp. E1820-E1829
-
-
Mangerich, A.1
Knutson, C.G.2
Parry, N.M.3
Muthupalani, S.4
Ye, W.5
Prestwich, E.6
-
6
-
-
84893428147
-
Emerging roles of the microbiome in cancer
-
Bultman SJ. Emerging roles of the microbiome in cancer. Carcinogenesis 2014;35:249-55.
-
(2014)
Carcinogenesis
, vol.35
, pp. 249-255
-
-
Bultman, S.J.1
-
7
-
-
80054091498
-
Intestinal microbiota promote enteric virus replication and systemic pathogenesis
-
Kuss SK, Best GT, Etheredge CA, Pruijssers AJ, Frierson JM, Hooper LV, et al. Intestinal microbiota promote enteric virus replication and systemic pathogenesis. Science 2011;334:249-52.
-
(2011)
Science
, vol.334
, pp. 249-252
-
-
Kuss, S.K.1
Best, G.T.2
Etheredge, C.A.3
Pruijssers, A.J.4
Frierson, J.M.5
Hooper, L.V.6
-
8
-
-
80054115012
-
Successful transmission of a retrovirus depends on the commensal microbiota
-
Kane M, Case LK, Kopaskie K, Kozlova A, MacDearmid C, Chervonsky AV, et al. Successful transmission of a retrovirus depends on the commensal microbiota. Science 2011;334:245-9.
-
(2011)
Science
, vol.334
, pp. 245-249
-
-
Kane, M.1
Case, L.K.2
Kopaskie, K.3
Kozlova, A.4
MacDearmid, C.5
Chervonsky, A.V.6
-
9
-
-
27644443333
-
Molecular identification of bacteria associated with bacterial vaginosis
-
Fredricks DN, Fiedler TL, Marrazzo JM. Molecular identification of bacteria associated with bacterial vaginosis. N Engl J Med 2005;353: 1899-911.
-
(2005)
N Engl J Med
, vol.353
, pp. 1899-1911
-
-
Fredricks, D.N.1
Fiedler, T.L.2
Marrazzo, J.M.3
-
10
-
-
20144367468
-
Effects of bacterial vaginosis and other genital infections on the natural history of human papillomavirus infection in HIV-1-infected and high-risk HIV-1-uninfected women
-
Watts DH, Fazzari M, MinkoffH, Hillier SL, Sha B, GlesbyM, et al. Effects of bacterial vaginosis and other genital infections on the natural history of human papillomavirus infection in HIV-1-infected and high-risk HIV-1-uninfected women. J Infect Dis 2005;191:1129-39.
-
(2005)
J Infect Dis
, vol.191
, pp. 1129-1139
-
-
Watts, D.H.1
Fazzari, M.2
Minkoff, H.3
Hillier, S.L.4
Glesby, M.5
Sha, B.6
-
11
-
-
80053554095
-
Bacterial vaginosis and the natural history of human papillomavirus
-
King CC, Jamieson DJ, Wiener J, Cu-Uvin S, Klein RS, Rompalo AM, et al. Bacterial vaginosis and the natural history of human papillomavirus. Infect Dis Obstet Gynecol 2011;2011:319460.
-
(2011)
Infect Dis Obstet Gynecol
, vol.2011
, pp. 319460
-
-
King, C.C.1
Jamieson, D.J.2
Wiener, J.3
Cu-Uvin, S.4
Klein, R.S.5
Rompalo, A.M.6
-
12
-
-
84878732801
-
Comparison of the vaginal microbiota diversity of women with and without human papillomavirus infection: A cross-sectional study
-
Gao W, Weng J, Gao Y, Chen X. Comparison of the vaginal microbiota diversity of women with and without human papillomavirus infection: a cross-sectional study. BMC Infect Dis 2013;13:271.
-
(2013)
BMC Infect Dis
, vol.13
, pp. 271
-
-
Gao, W.1
Weng, J.2
Gao, Y.3
Chen, X.4
-
13
-
-
84878064920
-
Association of the vaginal microbiota with human papillomavirus infection in a Korean twin cohort
-
Lee JE, Lee S, Lee H, Song YM, Lee K, Han MJ, et al. Association of the vaginal microbiota with human papillomavirus infection in a Korean twin cohort. PLOS ONE 2013;8:e63514.
-
(2013)
PLOS ONE
, vol.8
, pp. e63514
-
-
Lee, J.E.1
Lee, S.2
Lee, H.3
Song, Y.M.4
Lee, K.5
Han, M.J.6
-
14
-
-
84922318971
-
Interplay between the temporal dynamics of the vaginal microbiota and human papillomavirus detection
-
Brotman RM, Shardell MD, Gajer P, Tracy JK, Zenilman JM, Ravel J, et al. Interplay Between the Temporal Dynamics of the Vaginal Microbiota and Human Papillomavirus Detection. J Infect Dis 2014;210:1723-33.
-
(2014)
J Infect Dis
, vol.210
, pp. 1723-1733
-
-
Brotman, R.M.1
Shardell, M.D.2
Gajer, P.3
Tracy, J.K.4
Zenilman, J.M.5
Ravel, J.6
-
15
-
-
84917701407
-
Getting started with microbiome analysis: Sample acquisition to bioinformatics
-
Kumar R, Eipers P, Little RB, Crowley M, Crossman DK, Lefkowitz EJ, et al. Getting started with microbiome analysis: sample acquisition to bioinformatics. Curr Protoc Hum Genet 2014;82:18.8.1-18.8.29.
-
(2014)
Curr Protoc Hum Genet
, vol.82
, pp. 1881-18829
-
-
Kumar, R.1
Eipers, P.2
Little, R.B.3
Crowley, M.4
Crossman, D.K.5
Lefkowitz, E.J.6
-
16
-
-
84884251320
-
Development of a dual-index sequencing strategy and curation pipeline for analyzing amplicon sequence data on theMiSeq Illumina sequencing platform
-
Kozich JJ, Westcott SL, Baxter NT, Highlander SK, Schloss PD. Development of a dual-index sequencing strategy and curation pipeline for analyzing amplicon sequence data on theMiSeq Illumina sequencing platform. Appl Environ Microbiol 2013;79:5112-20.
-
(2013)
Appl Environ Microbiol
, vol.79
, pp. 5112-5120
-
-
Kozich, J.J.1
Westcott, S.L.2
Baxter, N.T.3
Highlander, S.K.4
Schloss, P.D.5
-
17
-
-
33947269742
-
Quantitative and qualitative beta diversity measures lead to different insights into factors that structure microbial communities
-
Lozupone CA, Hamady M, Kelley ST, Knight R. Quantitative and qualitative beta diversity measures lead to different insights into factors that structure microbial communities. Appl Environ Microbiol 2007;73:1576-85.
-
(2007)
Appl Environ Microbiol
, vol.73
, pp. 1576-1585
-
-
Lozupone, C.A.1
Hamady, M.2
Kelley, S.T.3
Knight, R.4
-
18
-
-
84884577945
-
Advancing our understanding of the human microbiome using QIIME
-
Navas-Molina JA, Peralta-Sanchez JM, Gonzalez A, McMurdie PJ, Vazquez-Baeza Y, Xu Z, et al. Advancing our understanding of the human microbiome using QIIME. Methods Enzymol 2013;531:371-444.
-
(2013)
Methods Enzymol
, vol.531
, pp. 371-444
-
-
Navas-Molina, J.A.1
Peralta-Sanchez, J.M.2
Gonzalez, A.3
McMurdie, P.J.4
Vazquez-Baeza, Y.5
Xu, Z.6
-
19
-
-
77957244650
-
Search and clustering orders of magnitude faster than BLAST
-
Edgar RC. Search and clustering orders of magnitude faster than BLAST. Bioinformatics (Oxford, England) 2010;26:2460-61.
-
(2010)
Bioinformatics (Oxford, England)
, vol.26
, pp. 2460-2461
-
-
Edgar, R.C.1
-
20
-
-
84891787231
-
Ribosomal database project: Data and tools for high throughput rrna analysis
-
Cole JR, Wang Q, Fish JA, Chai B, McGarrell DM, Sun Y, et al. Ribosomal Database Project: data and tools for high throughput rRNA analysis. Nucleic Acids Res 2014;42 (Database issue):D633-42.
-
(2014)
Nucleic Acids Res
, vol.42
, Issue.DATABASE ISSUE
, pp. D633-D642
-
-
Cole, J.R.1
Wang, Q.2
Fish, J.A.3
Chai, B.4
McGarrell, D.M.5
Sun, Y.6
-
21
-
-
84857122937
-
An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea
-
McDonald D, Price MN, Goodrich J, Nawrocki EP, DeSantis TZ, Probst A, et al. An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea. ISME J 2012;6:610-18.
-
(2012)
ISME J
, vol.6
, pp. 610-618
-
-
McDonald, D.1
Price, M.N.2
Goodrich, J.3
Nawrocki, E.P.4
DeSantis, T.Z.5
Probst, A.6
-
22
-
-
34548293679
-
Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
-
Wang Q, Garrity GM, Tiedje JM, Cole JR. Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl Environ Microbiol 2007;73:5261-7.
-
(2007)
Appl Environ Microbiol
, vol.73
, pp. 5261-5267
-
-
Wang, Q.1
Garrity, G.M.2
Tiedje, J.M.3
Cole, J.R.4
-
23
-
-
84871979584
-
Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing
-
Bokulich NA, Subramanian S, Faith JJ, Gevers D, Gordon JI, Knight R, et al. Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing. Nature Methods 2013;10:57-9.
-
(2013)
Nature Methods
, vol.10
, pp. 57-59
-
-
Bokulich, N.A.1
Subramanian, S.2
Faith, J.J.3
Gevers, D.4
Gordon, J.I.5
Knight, R.6
-
24
-
-
75249107844
-
PyNAST: A flexible tool for aligning sequences to a template alignment
-
Caporaso JG, Bittinger K, Bushman FD, DeSantis TZ, Andersen GL, Knight R. PyNAST: a flexible tool for aligning sequences to a template alignment. Bioinformatics (Oxford, England) 2010;26:266-7.
-
(2010)
Bioinformatics (Oxford, England)
, vol.26
, pp. 266-267
-
-
Caporaso, J.G.1
Bittinger, K.2
Bushman, F.D.3
DeSantis, T.Z.4
Andersen, G.L.5
Knight, R.6
-
25
-
-
77949718257
-
Fasttree 2-approximately maximumlikelihood trees for large alignments
-
Price MN, Dehal PS, Arkin AP. FastTree 2-approximately maximumlikelihood trees for large alignments. PloS one 2010;5:e9490.
-
(2010)
PloS One
, vol.5
, pp. e9490
-
-
Price, M.N.1
Dehal, P.S.2
Arkin, A.P.3
-
26
-
-
67649327176
-
FastTree: Computing large minimum evolution trees with profiles instead of a distance matrix
-
Price MN, Dehal PS, Arkin AP. FastTree: computing large minimum evolution trees with profiles instead of a distance matrix. Mol Biol Evolution 2009;26:1641-50.
-
(2009)
Mol Biol Evolution
, vol.26
, pp. 1641-1650
-
-
Price, M.N.1
Dehal, P.S.2
Arkin, A.P.3
-
27
-
-
33748713890
-
UniFrac-an online tool for comparing microbial community diversity in a phylogenetic context
-
Lozupone C, Hamady M, Knight R. UniFrac-an online tool for comparing microbial community diversity in a phylogenetic context. BMC Bioinformatics 2006;7:371.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 371
-
-
Lozupone, C.1
Hamady, M.2
Knight, R.3
-
28
-
-
84991526597
-
EMPeror: A tool for visualizing high-throughput microbial community data
-
Vazquez-Baeza Y, Pirrung M, Gonzalez A, Knight R. EMPeror: a tool for visualizing high-throughput microbial community data. Gigascience 2013;2:16.
-
(2013)
Gigascience
, vol.2
, pp. 16
-
-
Vazquez-Baeza, Y.1
Pirrung, M.2
Gonzalez, A.3
Knight, R.4
-
29
-
-
84884127512
-
Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences
-
Langille MG, Zaneveld J, Caporaso JG, McDonald D, Knights D, Reyes JA, et al. Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences. Nature Biotechnol 2013;31:814-21.
-
(2013)
Nature Biotechnol
, vol.31
, pp. 814-821
-
-
Langille, M.G.1
Zaneveld, J.2
Caporaso, J.G.3
McDonald, D.4
Knights, D.5
Reyes, J.A.6
-
30
-
-
84966910278
-
-
Oksanen Jari, Guillaume Blanchet F, Kindt Roeland, Legendre Pierre, Minchin Peter R, O'Hara R B, et al. (2015). vegan: Community Ecology Package. R package version 2.3-0. http://CRAN.R-project. org/package=vegan
-
(2015)
Vegan: Community Ecology Package. R Package Version 2.3-0
-
-
Jari, O.1
Guillaume, B.F.2
Roeland, K.3
Pierre, L.4
Peter, M.R.5
O'Hara, R.B.6
-
31
-
-
84856521514
-
Dirichlet multinomial mixtures: Generative models for microbial metagenomics
-
Holmes I, Harris K, Quince C. Dirichlet multinomial mixtures: generative models for microbial metagenomics. PLoS One 2012;7:e30126.
-
(2012)
PLoS One
, vol.7
, pp. e30126
-
-
Holmes, I.1
Harris, K.2
Quince, C.3
-
32
-
-
72949107142
-
Introducing mothur: Open-source, platform-independent, communitysupported software for describing and comparingmicrobial communities
-
Schloss PD, Westcott SL, Ryabin T, Hall JR, HartmannM, Hollister EB, et al. Introducing mothur: open-source, platform-independent, communitysupported software for describing and comparingmicrobial communities. Appl Environ Microbiol 2009;75:7537-41.
-
(2009)
Appl Environ Microbiol
, vol.75
, pp. 7537-7541
-
-
Schloss, P.D.1
Westcott, S.L.2
Ryabin, T.3
Hall, J.R.4
Hartmann, M.5
Hollister, E.B.6
-
34
-
-
79959383523
-
Metagenomic biomarker discovery and explanation
-
Segata N, Izard J, Waldron L, Gevers D, Miropolsky L, Garrett WS, et al. Metagenomic biomarker discovery and explanation. Genome Biol 2011; 12:R60.
-
(2011)
Genome Biol
, vol.12
, pp. R60
-
-
Segata, N.1
Izard, J.2
Waldron, L.3
Gevers, D.4
Miropolsky, L.5
Garrett, W.S.6
-
35
-
-
84924629414
-
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
-
Love MI, Huber W, Anders S. Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2. Genome Biol 2014;15:550.
-
(2014)
Genome Biol
, vol.15
, pp. 550
-
-
Love, M.I.1
Huber, W.2
Anders, S.3
-
36
-
-
84055193937
-
Vaginal microbiome and sexually transmitted infections: An epidemiologic perspective
-
Brotman RM. Vaginal microbiome and sexually transmitted infections: an epidemiologic perspective. J Clin Invest 2011;121:4610-17.
-
(2011)
J Clin Invest
, vol.121
, pp. 4610-4617
-
-
Brotman, R.M.1
-
37
-
-
84929688630
-
Cervicovaginal bacteria are a major modulator of host inflammatory responses in the female genital tract
-
Anahtar MN, Byrne EH, Doherty KE, Bowman BA, Yamamoto HS, Soumillon M, et al. Cervicovaginal bacteria are a major modulator of host inflammatory responses in the female genital tract. Immunity 2015;42, 965-76.
-
(2015)
Immunity
, vol.42
, pp. 965-976
-
-
Anahtar, M.N.1
Byrne, E.H.2
Doherty, K.E.3
Bowman, B.A.4
Yamamoto, H.S.5
Soumillon, M.6
-
38
-
-
0029562793
-
Association between bacterial vaginosis and preterm delivery of a lowbirth-weight infant the vaginal infections and prematurity study group
-
Hillier SL, Nugent RP, Eschenbach DA, Krohn MA, Gibbs RS, Martin DH, et al. Association between bacterial vaginosis and preterm delivery of a lowbirth-weight infant. The Vaginal Infections and Prematurity Study Group. N Engl J Med 1995;333:1737-42.
-
(1995)
N Engl J Med
, vol.333
, pp. 1737-1742
-
-
Hillier, S.L.1
Nugent, R.P.2
Eschenbach, D.A.3
Krohn, M.A.4
Gibbs, R.S.5
Martin, D.H.6
-
39
-
-
0038336571
-
Bacterial vaginosis as a risk factor for preterm delivery: A meta-analysis
-
Leitich H, Bodner-Adler B, Brunbauer M, Kaider A, Egarter C, Husslein P. Bacterial vaginosis as a risk factor for preterm delivery: a meta-analysis. Am J Obstet Gynecol 2003;189:139-47.
-
(2003)
Am J Obstet Gynecol
, vol.189
, pp. 139-147
-
-
Leitich, H.1
Bodner-Adler, B.2
Brunbauer, M.3
Kaider, A.4
Egarter, C.5
Husslein, P.6
-
40
-
-
1242336856
-
Identification and H(2)O( 2) production of vaginal lactobacilli from pregnant women at high risk of preterm birth and relation with outcome
-
Wilks M, Wiggins R, Whiley A, Hennessy E, Warwick S, Porter H, et al. Identification and H(2)O(2) production of vaginal lactobacilli from pregnant women at high risk of preterm birth and relation with outcome. J Clin Microbiol 2004;42:713-7.
-
(2004)
J Clin Microbiol
, Issue.42
, pp. 713-717
-
-
Wilks, M.1
Wiggins, R.2
Whiley, A.3
Hennessy, E.4
Warwick, S.5
Porter, H.6
-
41
-
-
84930804840
-
The association of uterine cervical microbiotawith an increased risk for cervical intraepithelial neoplasia in Korea
-
Oh HY, Kim BS, Seo SS, Kong JS, Lee JK, Park SY, et al. The association of uterine cervical microbiotawith an increased risk for cervical intraepithelial neoplasia in Korea. Clin Microbiol Infect 2015;21:674.e1-9.
-
(2015)
Clin Microbiol Infect
, vol.21
, pp. 674e1-674e9
-
-
Oh, H.Y.1
Kim, B.S.2
Seo, S.S.3
Kong, J.S.4
Lee, J.K.5
Park, S.Y.6
-
42
-
-
84863614159
-
The cervical microbiome over 7 years and a comparison of methodologies for its characterization
-
Smith BC, McAndrew T, Chen Z, Harari A, Barris DM, Viswanathan S, et al. The cervical microbiome over 7 years and a comparison of methodologies for its characterization. PLoS ONE 2012;7:e40425.
-
(2012)
PLoS ONE
, vol.7
, pp. e40425
-
-
Smith, B.C.1
McAndrew, T.2
Chen, Z.3
Harari, A.4
Barris, D.M.5
Viswanathan, S.6
-
43
-
-
0032913490
-
Phenotypic and phylogenetic characterization of a novel Lactobacillus species from human sources: Description of Lactobacillus iners sp. Nov
-
Falsen E, Pascual C, Sjoden B, Ohlen M, Collins MD. Phenotypic and phylogenetic characterization of a novel Lactobacillus species from human sources: description of Lactobacillus iners sp. nov. Int J Syst Bacteriol 1999; 49:217-21.
-
(1999)
Int J Syst Bacteriol
, vol.49
, pp. 217-221
-
-
Falsen, E.1
Pascual, C.2
Sjoden, B.3
Ohlen, M.4
Collins, M.D.5
-
44
-
-
84883387768
-
Influence of vaginal bacteria and D-and L-lactic acid isomers on vaginal extracellular matrix metalloproteinase inducer: Implications for protection against upper genital tract infections
-
Witkin SS, Mendes-Soares H, Linhares IM, Jayaram A, LedgerWJ, Forney LJ. Influence of vaginal bacteria and D-and L-lactic acid isomers on vaginal extracellular matrix metalloproteinase inducer: implications for protection against upper genital tract infections. MBio. 2013;4:e00460-13.
-
(2013)
MBio
, vol.4
, pp. e00460-e00513
-
-
Witkin, S.S.1
Mendes-Soares, H.2
Linhares, I.M.3
Jayaram, A.4
Ledger, W.J.5
Forney, L.J.6
-
45
-
-
84934769334
-
Schirmer. Insight into biases and sequencing errors for amplicon sequencingwith the Illumina MiSeq platform
-
Schirmer M, Ijaz UZ, D'Amore R, Hall N, Sloan WT, Quince C. Schirmer. Insight into biases and sequencing errors for amplicon sequencingwith the Illumina MiSeq platform. Nucleic Acids Research 2015;43:e37.
-
(2015)
Nucleic Acids Research
, vol.43
, pp. e37
-
-
Schirmer, M.1
Ijaz, U.Z.2
D'Amore, R.3
Hall, N.4
Sloan, W.T.5
Quince, C.6
-
46
-
-
84946144999
-
Gut mucosal microbiome across stages of colorectal carcinogenesis
-
Nakatsu G, Li X, Zhou H, Sheng J, Wong SH, Wu WK, et al. Gut mucosal microbiome across stages of colorectal carcinogenesis. Nat Commun 2015;6:8727.
-
(2015)
Nat Commun
, vol.6
, pp. 8727
-
-
Nakatsu, G.1
Li, X.2
Zhou, H.3
Sheng, J.4
Wong, S.H.5
Wu, W.K.6
-
47
-
-
84927570563
-
Influence of age, reproductive cycling status, and menstruation on the vaginal microbiome in baboons (Papio anubis)
-
UchihashiM, Bergin I, Bassis C, Hashway S, Chai D, Bell J. Influence of age, reproductive cycling status, and menstruation on the vaginal microbiome in baboons (Papio anubis). Am J Primatol 2015;77:563-578.
-
(2015)
Am J Primatol
, vol.77
, pp. 563-578
-
-
Uchihashi, M.1
Bergin, I.2
Bassis, C.3
Hashway, S.4
Chai, D.5
Bell, J.6
-
48
-
-
84939641167
-
Stool microbiota composition is associated with the prospective risk of Plasmodium falciparum infection
-
Yooseph S, Kirkness EF, Tran TM, Harkins DM, Jones MB, Torralba MG, et al. Stool microbiota composition is associated with the prospective risk of Plasmodium falciparum infection. Bmc Genomics 2015;16:631.
-
(2015)
Bmc Genomics
, vol.16
, pp. 631
-
-
Yooseph, S.1
Kirkness, E.F.2
Tran, T.M.3
Harkins, D.M.4
Jones, M.B.5
Torralba, M.G.6
-
49
-
-
84952942226
-
Stool consistency is strongly associated with gut microbiota richness and composition, enterotypes and bacterial growth rates
-
Vandeputte D, Falony G, Vieira-Silva S, Tito RY, Joossens M, Raes J. Stool consistency is strongly associated with gut microbiota richness and composition, enterotypes and bacterial growth rates. Gut Microotia 2016;65: 57-62.
-
(2016)
Gut Microotia
, vol.65
, pp. 57-62
-
-
Vandeputte, D.1
Falony, G.2
Vieira-Silva, S.3
Tito, R.Y.4
Joossens, M.5
Raes, J.6
-
50
-
-
84969997273
-
DirichletMultinomial: Dirichlet-multinomial mixture model machine learning for microbiome data
-
Martin Morgan. DirichletMultinomial: Dirichlet-multinomial mixture model machine learning for microbiome data. R package version 1.12.1.
-
R Package Version 1.12.1
-
-
Morgan, M.1
-
51
-
-
84900535804
-
Dynamics and associations of microbial community types across the human body
-
Ding T, Schloss PD. Dynamics and associations of microbial community types across the human body. Nature 2014;509:357-360.
-
(2014)
Nature
, vol.509
, pp. 357-360
-
-
Ding, T.1
Schloss, P.D.2
-
52
-
-
84901014117
-
Beneficial bacteria stimulate host immune cells to counteract dietary and genetic predisposition tomammary cancer in mice
-
Lakritz JR, Poutahidis T, Levkovich T, Varian BJ, Ibrahim YM, Chatzigiagkos A, et al. Beneficial bacteria stimulate host immune cells to counteract dietary and genetic predisposition tomammary cancer in mice. Int J Cancer 2014;135:529-40.
-
(2014)
Int J Cancer
, vol.135
, pp. 529-540
-
-
Lakritz, J.R.1
Poutahidis, T.2
Levkovich, T.3
Varian, B.J.4
Ibrahim, Y.M.5
Chatzigiagkos, A.6
-
53
-
-
84872360975
-
Lactobacillus reuteri DSM 17938 for the management of infantile colic in breastfed infants: A randomized, double-blind, placebo-controlled trial
-
Szajewska H, Gyrczuk E, Horvath A. Lactobacillus reuteri DSM 17938 for the management of infantile colic in breastfed infants: a randomized, double-blind, placebo-controlled trial. J Pediatr. 2013;162:257-62.
-
(2013)
J Pediatr
, vol.162
, pp. 257-262
-
-
Szajewska, H.1
Gyrczuk, E.2
Horvath, A.3
-
54
-
-
84880059693
-
Dysbiosis signature of fecal microbiota in colorectal cancer patients
-
Wu N, Yang X, Zhang R, Li J, Xiao X, Hu Y, et al. Dysbiosis signature of fecal microbiota in colorectal cancer patients. Microb Ecol 2013;66:462-70.
-
(2013)
Microb Ecol
, vol.66
, pp. 462-470
-
-
Wu, N.1
Yang, X.2
Zhang, R.3
Li, J.4
Xiao, X.5
Hu, Y.6
-
55
-
-
35448985445
-
Bacteroides: The good, the bad, and the nitty-gritty
-
Wexler HM. Bacteroides: the good, the bad, and the nitty-gritty. Clin Microbiol Rev 2007;20:593-621.
-
(2007)
Clin Microbiol Rev
, vol.20
, pp. 593-621
-
-
Wexler, H.M.1
-
56
-
-
79960854386
-
Intestinal microbiota in healthy adults: Temporal analysis reveals individual and common core and relation to intestinal symptoms
-
Jalanka-Tuovinen J, Salonen A, Nikkilä J, Immonen O, Kekkonen R, Lahti L, et al. Intestinal microbiota in healthy adults: temporal analysis reveals individual and common core and relation to intestinal symptoms. PLoS One 2011;6:e23035.
-
(2011)
PLoS One
, vol.6
, pp. e23035
-
-
Jalanka-Tuovinen, J.1
Salonen, A.2
Nikkilä, J.3
Immonen, O.4
Kekkonen, R.5
Lahti, L.6
-
57
-
-
70349233883
-
Towards the human intestinal microbiota phylogenetic core
-
Tap J, Mondot S, Levenez F, Pelletier E, Caron C, Furet JP, et al. Towards the human intestinal microbiota phylogenetic core. Environ Microbiol 2009;11:2574-84.
-
(2009)
Environ Microbiol
, vol.11
, pp. 2574-2584
-
-
Tap, J.1
Mondot, S.2
Levenez, F.3
Pelletier, E.4
Caron, C.5
Furet, J.P.6
-
58
-
-
84881270083
-
Commensal clostridia: Leading players in the maintenance of gut homeostasis
-
Lopetuso LR, Scaldaferri F, Petito V, Gasbarrini A. Commensal Clostridia: leading players in the maintenance of gut homeostasis. Gut Pathog. 2013;5:23.
-
(2013)
Gut Pathog
, vol.5
, pp. 23
-
-
Lopetuso, L.R.1
Scaldaferri, F.2
Petito, V.3
Gasbarrini, A.4
-
60
-
-
78651106206
-
Bacterial vaginosis is associated with uterine cervical human papillomavirus infection: A meta-analysis
-
Gillet E, Meys JF, Verstraelen H, Bosire C, De Sutter P, Temmerman M, et al. Bacterial vaginosis is associated with uterine cervical human papillomavirus infection: a meta-analysis. BMC Infect Dis 2011; 11:10.
-
(2011)
BMC Infect Dis
, vol.11
, pp. 10
-
-
Gillet, E.1
Meys, J.F.2
Verstraelen, H.3
Bosire, C.4
De Sutter, P.5
Temmerman, M.6
-
61
-
-
22544474147
-
Colonization of the rectum by Lactobacillus species and decreased risk of bacterial vaginosis
-
Antonio MA, Rabe LK, Hillier SL. Colonization of the rectum by Lactobacillus species and decreased risk of bacterial vaginosis. J Infect Dis 2005;192:394-8.
-
(2005)
J Infect Dis
, vol.192
, pp. 394-398
-
-
Antonio, M.A.1
Rabe, L.K.2
Hillier, S.L.3
-
62
-
-
70449709347
-
Identification and genotyping of bacteria from paired vaginal and rectal samples from pregnant women indicates similarity between vaginal and rectal microflora
-
El Aila NA, Tency I, Claeys G, Verstraelen H, Saerens B, Santiago GL, et al. Identification and genotyping of bacteria from paired vaginal and rectal samples from pregnant women indicates similarity between vaginal and rectal microflora. BMC Infect Dis 2009;9:167.
-
(2009)
BMC Infect Dis
, vol.9
, pp. 167
-
-
El Aila, N.A.1
Tency, I.2
Claeys, G.3
Verstraelen, H.4
Saerens, B.5
Santiago, G.L.6
-
63
-
-
84855825091
-
Characterisation of the oral, vaginal and rectal Lactobacillus flora in healthy pregnant and postmenopausal women
-
Petricevic L, Domig KJ, Nierscher FJ, Krondorfer I, Janitschek C, Kneifel W, et al. Characterisation of the oral, vaginal and rectal Lactobacillus flora in healthy pregnant and postmenopausal women. Eur J Obstet Gynecol Reprod Biol 2012;160:93-9.
-
(2012)
Eur J Obstet Gynecol Reprod Biol
, vol.160
, pp. 93-99
-
-
Petricevic, L.1
Domig, K.J.2
Nierscher, F.J.3
Krondorfer, I.4
Janitschek, C.5
Kneifel, W.6
-
65
-
-
0030176396
-
Prognostic and aetiological relevance of 8-hydroxyguanosine in human breast carcinogenesis
-
Musarrat J, Arezina-Wilson J, Wani AA. Prognostic and aetiological relevance of 8-hydroxyguanosine in human breast carcinogenesis. Eur J Cancer 1996;32A:1209-14.
-
(1996)
Eur J Cancer
, vol.32 A
, pp. 1209-1214
-
-
Musarrat, J.1
Arezina-Wilson, J.2
Wani, A.A.3
-
66
-
-
0034599425
-
Increased formation of oxidative DNA damage, 8-hydroxy-20-deoxyguanosine, in human breast cancer tissue and its relationship to GSTP1 and COMT genotypes
-
Matsui A, Ikeda T, Enomoto K, Hosoda K, Nakashima H, Omae K, et al. Increased formation of oxidative DNA damage, 8-hydroxy-20-deoxyguanosine, in human breast cancer tissue and its relationship to GSTP1 and COMT genotypes. Cancer Lett 2000;151:87-95.
-
(2000)
Cancer Lett
, vol.151
, pp. 87-95
-
-
Matsui, A.1
Ikeda, T.2
Enomoto, K.3
Hosoda, K.4
Nakashima, H.5
Omae, K.6
-
67
-
-
0030982771
-
Genetic alterations and oxidative metabolism in sporadic colorectal tumors from a Spanish community
-
Oliva MR, Ripoll F, Mu~niz P, Iradi A, Trullenque R, Valls V, et al. Genetic alterations and oxidative metabolism in sporadic colorectal tumors from a Spanish community. Mol Carcinog. 1997;18:232-43.
-
(1997)
Mol Carcinog
, vol.18
, pp. 232-243
-
-
Oliva, M.R.1
Ripoll, F.2
Muniz, P.3
Iradi, A.4
Trullenque, R.5
Valls, V.6
-
68
-
-
0034125910
-
8-Hydroxy-2-deoxyguanosine in cervical cells: Correlation with grade of dysplasia and human papillomavirus infection
-
Romano G, Sgambato A, Mancini R, Capelli G, Giovagnoli MR, Flamini G, et al. 8-Hydroxy-2-deoxyguanosine in cervical cells: correlation with grade of dysplasia and human papillomavirus infection. Carcinogenesis 2000;21:1143-7.
-
(2000)
Carcinogenesis
, vol.21
, pp. 1143-1147
-
-
Romano, G.1
Sgambato, A.2
Mancini, R.3
Capelli, G.4
Giovagnoli, M.R.5
Flamini, G.6
-
69
-
-
84954385927
-
Higher levels of oxidative DNA damage in cervical cells are correlated with the grade of dysplasia and HPV infection
-
Visalli G, Riso R, Facciola A, Mondello P, Caruso C, Picerno I, et al. Higher levels of oxidative DNA damage in cervical cells are correlated with the grade of dysplasia and HPV infection. J Med Virol 2016;88:336-44.
-
(2016)
J Med Virol
, vol.88
, pp. 336-344
-
-
Visalli, G.1
Riso, R.2
Facciola, A.3
Mondello, P.4
Caruso, C.5
Picerno, I.6
-
70
-
-
84885922783
-
Redox signalingmediated by the gutmicrobiota
-
Neish AS. Redox signalingmediated by the gutmicrobiota. Free Radical Res 2013;47:950-7.
-
(2013)
Free Radical Res
, vol.47
, pp. 950-957
-
-
Neish, A.S.1
-
71
-
-
85044695622
-
Cancer and the microbiota
-
Garrett WS. Cancer and the microbiota. Science. 2015;348:80-6.
-
(2015)
Science
, vol.348
, pp. 80-86
-
-
Garrett, W.S.1
-
72
-
-
1842687869
-
Production of reactive oxygen species and 8-hydroxy-2'deoxyguanosine in KB cells co-exposed to benzoa]pyrene and UV-A radiation
-
Zhang X, WuRS, Fu W, Xu L, Lam PK. Production of reactive oxygen species and 8-hydroxy-2'deoxyguanosine in KB cells co-exposed to benzoa]pyrene and UV-A radiation. Chemosphere 2004;55:1303-8.
-
(2004)
Chemosphere
, vol.55
, pp. 1303-1308
-
-
Zhang, X.1
Wu, R.S.2
Fu, W.3
Xu, L.4
Lam, P.K.5
-
73
-
-
84908608590
-
The gut microbiota, bacterial metabolites and colorectal cancer
-
Louis P, Hold GL, Flint HJ. The gut microbiota, bacterial metabolites and colorectal cancer. Nat Rev Microbiol 2014;12:661-72.
-
(2014)
Nat Rev Microbiol
, vol.12
, pp. 661-672
-
-
Louis, P.1
Hold, G.L.2
Flint, H.J.3
-
75
-
-
84934312278
-
Glycosyltransferases as markers for early tumorigenesis
-
Andergassen U, Liesche F, Kolbl AC, Ilmer M, Hutter S, Friese K, Jeschke U. Glycosyltransferases as markers for early tumorigenesis. Biomed Res Int 2015;2015:792672.
-
(2015)
Biomed Res Int
, vol.2015
, pp. 792672
-
-
Andergassen, U.1
Liesche, F.2
Kolbl, A.C.3
Ilmer, M.4
Hutter, S.5
Friese, K.6
Jeschke, U.7
-
76
-
-
79953284197
-
A higher degree of LINE-1 methylation in peripheral blood mononuclear cells, a one-carbon nutrient related epigenetic alteration, is associated with a lower risk of developing cervical intraepithelial neoplasia
-
Piyathilake CJ, Macaluso M, Alvarez RD, Chen M, Badiga S, Siddiqui NR, et al. A higher degree of LINE-1 methylation in peripheral blood mononuclear cells, a one-carbon nutrient related epigenetic alteration, is associated with a lower risk of developing cervical intraepithelial neoplasia. Nutrition 2011;27:513-9.
-
(2011)
Nutrition
, vol.27
, pp. 513-519
-
-
Piyathilake, C.J.1
Macaluso, M.2
Alvarez, R.D.3
Chen, M.4
Badiga, S.5
Siddiqui, N.R.6
-
77
-
-
0030978427
-
Intestinal flora and endogenous vitamin synthesis
-
Hill MJ. Intestinal flora and endogenous vitamin synthesis. Eur J Cancer Prev 1997;6:S43-5.
-
(1997)
Eur J Cancer Prev
, vol.6
, pp. S43-S45
-
-
Hill, M.J.1
-
78
-
-
79952055276
-
Folate production by probiotic bacteria
-
Rossi M, Amaretti A, Raimondi S. Folate production by probiotic bacteria. Nutrients 2011;3:118-34.
-
(2011)
Nutrients
, vol.3
, pp. 118-134
-
-
Rossi, M.1
Amaretti, A.2
Raimondi, S.3
-
79
-
-
84927124979
-
Systematic genome assessment of B-vitamin biosynthesis suggests co-operation among gut microbes
-
Magnusdottir S, Ravcheev D, de Crecy-Lagard V, Thiele I. Systematic genome assessment of B-vitamin biosynthesis suggests co-operation among gut microbes. Front Genet 2015;6:148.
-
(2015)
Front Genet
, vol.6
, pp. 148
-
-
Magnusdottir, S.1
Ravcheev, D.2
De Crecy-Lagard, V.3
Thiele, I.4
-
80
-
-
41849147191
-
Moderate folate depletion modulates the expression of selected genes involved in cell cycle, intracellular signaling and folate uptake in human colonic epithelial cell lines
-
Crott JW, Liu Z, Keyes MK, Choi SW, Jang H, Moyer MP, et al. Moderate folate depletion modulates the expression of selected genes involved in cell cycle, intracellular signaling and folate uptake in human colonic epithelial cell lines. J Nutr Biochem 2008;19:328-35.
-
(2008)
J Nutr Biochem
, vol.19
, pp. 328-335
-
-
Crott, J.W.1
Liu, Z.2
Keyes, M.K.3
Choi, S.W.4
Jang, H.5
Moyer, M.P.6
-
81
-
-
0032883172
-
Expression of folate receptor type alpha in relation to cell type, malignancy, and differentiation in ovary, uterus, and cervix
-
Wu M, Gunning W, Ratnam M. Expression of folate receptor type alpha in relation to cell type, malignancy, and differentiation in ovary, uterus, and cervix. Cancer Epidemiol Biomarkers Prev 1999;8:775-82.
-
(1999)
Cancer Epidemiol Biomarkers Prev
, vol.8
, pp. 775-782
-
-
Wu, M.1
Gunning, W.2
Ratnam, M.3
-
82
-
-
36749022214
-
The DNA damage response: Ten years after
-
Harper JW, Elledge SJ. The DNA damage response: ten years after. Mol Cell 2007;28:739-45.
-
(2007)
Mol Cell
, vol.28
, pp. 739-745
-
-
Harper, J.W.1
Elledge, S.J.2
|