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Volumn 113, Issue 21, 2016, Pages 5898-5903

Design of a small molecule against an oncogenic noncoding RNA

Author keywords

Chemistry; Drug design; Noncoding RNA; Nucleic acids; RNA

Indexed keywords

ANTINEOPLASTIC AGENT; MICRORNA; MICRORNA 96; SHORT HAIRPIN RNA; TARGAPRIMIR 96; TRANSCRIPTION FACTOR FKHR; UNCLASSIFIED DRUG; ANTAGOMIR; DROSHA PROTEIN, HUMAN; MIRN96 MICRORNA, HUMAN; MOLECULAR LIBRARY; RIBONUCLEASE III;

EID: 84969765254     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1523975113     Document Type: Article
Times cited : (163)

References (37)
  • 1
    • 78049232281 scopus 로고    scopus 로고
    • The myc-MIR-17∼92 axis blunts TGFβ signaling and production of multiple TGFβ-dependent antiangiogenic factors
    • Dews M, et al. (2010) The myc-miR-17∼92 axis blunts TGFβ signaling and production of multiple TGFβ-dependent antiangiogenic factors. Cancer Res 70(20):8233-8246.
    • (2010) Cancer Res , vol.70 , Issue.20 , pp. 8233-8246
    • Dews, M.1
  • 2
    • 0028360374 scopus 로고
    • A mammalian protein targeted by G1-arresting rapamycinreceptor complex
    • Brown EJ, et al. (1994) A mammalian protein targeted by G1-arresting rapamycinreceptor complex. Nature 369(6483):756-758.
    • (1994) Nature , vol.369 , Issue.6483 , pp. 756-758
    • Brown, E.J.1
  • 3
    • 79959913677 scopus 로고    scopus 로고
    • MicroRNA sequence and expression analysis in breast tumors by deep sequencing
    • Farazi TA, et al. (2011) MicroRNA sequence and expression analysis in breast tumors by deep sequencing. Cancer Res 71(13):4443-4453.
    • (2011) Cancer Res , vol.71 , Issue.13 , pp. 4443-4453
    • Farazi, T.A.1
  • 4
    • 84900020022 scopus 로고    scopus 로고
    • MIR-20a promotes prostate cancer invasion and migration through targeting ABL2
    • Qiang XF, et al. (2014) miR-20a promotes prostate cancer invasion and migration through targeting ABL2. J Cell Biochem 115(7):1269-1276.
    • (2014) J Cell Biochem , vol.115 , Issue.7 , pp. 1269-1276
    • Qiang, X.F.1
  • 5
    • 2442626706 scopus 로고    scopus 로고
    • Incorporating chemical modification constraints into a dynamic programming algorithm for prediction of RNA secondary structure
    • Mathews DH, et al. (2004) Incorporating chemical modification constraints into a dynamic programming algorithm for prediction of RNA secondary structure. Proc Natl Acad Sci USA 101(19):7287-7292.
    • (2004) Proc Natl Acad Sci USA , vol.101 , Issue.19 , pp. 7287-7292
    • Mathews, D.H.1
  • 6
    • 84893427735 scopus 로고    scopus 로고
    • In vivo genome-wide profiling of RNA secondary structure reveals novel regulatory features
    • Ding Y, et al. (2014) In vivo genome-wide profiling of RNA secondary structure reveals novel regulatory features. Nature 505(7485):696-700.
    • (2014) Nature , vol.505 , Issue.7485 , pp. 696-700
    • Ding, Y.1
  • 7
    • 84941131131 scopus 로고    scopus 로고
    • A magnesium-induced RNA conformational switch at the internal ribosome entry site of hepatitis C virus genome visualized by atomic force microscopy
    • García-Sacristán A, et al. (2015) A magnesium-induced RNA conformational switch at the internal ribosome entry site of hepatitis C virus genome visualized by atomic force microscopy. Nucleic Acids Res 43(1):565-580.
    • (2015) Nucleic Acids Res , vol.43 , Issue.1 , pp. 565-580
    • García-Sacristán, A.1
  • 8
    • 68449092202 scopus 로고    scopus 로고
    • Architecture and secondary structure of an entire HIV-1 RNA genome
    • Watts JM, et al. (2009) Architecture and secondary structure of an entire HIV-1 RNA genome. Nature 460(7256):711-716.
    • (2009) Nature , vol.460 , Issue.7256 , pp. 711-716
    • Watts, J.M.1
  • 10
    • 84897024057 scopus 로고    scopus 로고
    • Sequence-based design of bioactive small molecules that target precursor microRNAs
    • Velagapudi SP, Gallo SM, Disney MD (2014) Sequence-based design of bioactive small molecules that target precursor microRNAs. Nat Chem Biol 10(4):291-297.
    • (2014) Nat Chem Biol , vol.10 , Issue.4 , pp. 291-297
    • Velagapudi, S.P.1    Gallo, S.M.2    Disney, M.D.3
  • 11
    • 50249089546 scopus 로고    scopus 로고
    • Two-dimensional combinatorial screening identifies specific aminoglycoside-RNA internal loop partners
    • Disney MD, et al. (2008) Two-dimensional combinatorial screening identifies specific aminoglycoside-RNA internal loop partners. J Am Chem Soc 130(33):11185-11194.
    • (2008) J Am Chem Soc , vol.130 , Issue.33 , pp. 11185-11194
    • Disney, M.D.1
  • 12
    • 79959902464 scopus 로고    scopus 로고
    • Defining the RNA internal loops preferred by benzimidazole derivatives via 2D combinatorial screening and computational analysis
    • Velagapudi SP, Seedhouse SJ, French J, Disney MD (2011) Defining the RNA internal loops preferred by benzimidazole derivatives via 2D combinatorial screening and computational analysis. J Am Chem Soc 133(26):10111-10118.
    • (2011) J Am Chem Soc , vol.133 , Issue.26 , pp. 10111-10118
    • Velagapudi, S.P.1    Seedhouse, S.J.2    French, J.3    Disney, M.D.4
  • 13
    • 69949119988 scopus 로고    scopus 로고
    • Coordinate regulation of FOXO1 by MIR-27a, MIR-96, and MIR-182 in breast cancer cells
    • Guttilla IK, White BA (2009) Coordinate regulation of FOXO1 by miR-27a, miR-96, and miR-182 in breast cancer cells. J Biol Chem 284(35):23204-23216.
    • (2009) J Biol Chem , vol.284 , Issue.35 , pp. 23204-23216
    • Guttilla, I.K.1    White, B.A.2
  • 14
    • 84884270935 scopus 로고    scopus 로고
    • Covalent small-molecule-RNA complex formation enables cellular profiling of small-molecule-RNA interactions
    • Guan L, Disney MD (2013) Covalent small-molecule-RNA complex formation enables cellular profiling of small-molecule-RNA interactions. Angew Chem Int Ed 52(38): 10010-10013.
    • (2013) Angew Chem Int Ed , vol.52 , Issue.38 , pp. 10010-10013
    • Guan, L.1    Disney, M.D.2
  • 15
    • 51349165812 scopus 로고    scopus 로고
    • Elevated expression of the MIR-17-92 polycistron and MIR-21 in hepadnavirus-associated hepatocellular carcinoma contributes to the malignant phenotype
    • Connolly E, et al. (2008) Elevated expression of the miR-17-92 polycistron and miR-21 in hepadnavirus-associated hepatocellular carcinoma contributes to the malignant phenotype. Am J Pathol 173(3):856-864.
    • (2008) Am J Pathol , vol.173 , Issue.3 , pp. 856-864
    • Connolly, E.1
  • 16
    • 80052775251 scopus 로고    scopus 로고
    • Using modularly assembled ligands to bind RNA internal loops separated by different distances
    • Childs-Disney JL, Tsitovich PB, Disney MD (2011) Using modularly assembled ligands to bind RNA internal loops separated by different distances. ChemBioChem 12(14): 2143-2146.
    • (2011) Chem Bio Chem , vol.12 , Issue.14 , pp. 2143-2146
    • Childs-Disney, J.L.1    Tsitovich, P.B.2    Disney, M.D.3
  • 17
    • 0346981999 scopus 로고    scopus 로고
    • Influencing receptorligand binding mechanisms with multivalent ligand architecture
    • Gestwicki JE, Cairo CW, Strong LE, Oetjen KA, Kiessling LL (2002) Influencing receptorligand binding mechanisms with multivalent ligand architecture. J Am Chem Soc 124(50):14922-14933.
    • (2002) J Am Chem Soc , vol.124 , Issue.50 , pp. 14922-14933
    • Gestwicki, J.E.1    Cairo, C.W.2    Strong, L.E.3    Oetjen, K.A.4    Kiessling, L.L.5
  • 18
    • 0032485264 scopus 로고    scopus 로고
    • Synthetic ligands point to cell surface strategies
    • Gordon EJ, Sanders WJ, Kiessling LL (1998) Synthetic ligands point to cell surface strategies. Nature 392(6671):30-31.
    • (1998) Nature , vol.392 , Issue.6671 , pp. 30-31
    • Gordon, E.J.1    Sanders, W.J.2    Kiessling, L.L.3
  • 19
    • 0034628502 scopus 로고    scopus 로고
    • Shiga-like toxins are neutralized by tailored multivalent carbohydrate ligands
    • Kitov PI, et al. (2000) Shiga-like toxins are neutralized by tailored multivalent carbohydrate ligands. Nature 403(6770):669-672.
    • (2000) Nature , vol.403 , Issue.6770 , pp. 669-672
    • Kitov, P.I.1
  • 20
    • 72249122539 scopus 로고    scopus 로고
    • Controlling the specificity of modularly assembled small molecules for RNA via ligand module spacing: Targeting the RNAs that cause myotonic muscular dystrophy
    • Lee MM, et al. (2009) Controlling the specificity of modularly assembled small molecules for RNA via ligand module spacing: Targeting the RNAs that cause myotonic muscular dystrophy. J Am Chem Soc 131(47):17464-17472.
    • (2009) J Am Chem Soc , vol.131 , Issue.47 , pp. 17464-17472
    • Lee, M.M.1
  • 21
    • 0032476812 scopus 로고    scopus 로고
    • Polyvalent interactions in biological systems: Implications for design and use of multivalent ligands and inhibitors
    • Mammen M, Choi SK, Whitesides GM (1998) Polyvalent interactions in biological systems: Implications for design and use of multivalent ligands and inhibitors. Angew Chem Int Ed 37(20):2754-2794.
    • (1998) Angew Chem Int Ed , vol.37 , Issue.20 , pp. 2754-2794
    • Mammen, M.1    Choi, S.K.2    Whitesides, G.M.3
  • 22
    • 0034738144 scopus 로고    scopus 로고
    • Design of bifunctional antibiotics that target bacterial rRNA and inhibit resistance-causing enzymes
    • Sucheck SJ, et al. (2000) Design of bifunctional antibiotics that target bacterial rRNA and inhibit resistance-causing enzymes. J Am Chem Soc 122(21):5230-5231.
    • (2000) J Am Chem Soc , vol.122 , Issue.21 , pp. 5230-5231
    • Sucheck, S.J.1
  • 23
    • 0033007592 scopus 로고    scopus 로고
    • Enhanced RNA binding of dimerized aminoglycosides
    • Michael K, Wang H, Tor Y (1999) Enhanced RNA binding of dimerized aminoglycosides. Bioorg Med Chem 7(7):1361-1371.
    • (1999) Bioorg Med Chem , vol.7 , Issue.7 , pp. 1361-1371
    • Michael, K.1    Wang, H.2    Tor, Y.3
  • 24
    • 0034830898 scopus 로고    scopus 로고
    • Molecular recognition of DNA by small molecules
    • Dervan PB (2001) Molecular recognition of DNA by small molecules. Bioorg Med Chem 9(9):2215-2235.
    • (2001) Bioorg Med Chem , vol.9 , Issue.9 , pp. 2215-2235
    • Dervan, P.B.1
  • 25
    • 0020440236 scopus 로고
    • Determination of binding stoichiometry by the continuous variation method: The Job plot
    • Huang CY (1982) Determination of binding stoichiometry by the continuous variation method: The Job plot. Methods Enzymol 87:509-525.
    • (1982) Methods Enzymol , vol.87 , pp. 509-525
    • Huang, C.Y.1
  • 26
    • 81055148337 scopus 로고    scopus 로고
    • Age-related decrease of miRNA-92a levels in human CD8+ T-cells correlates with a reduction of naïve T lymphocytes
    • Ohyashiki M, Ohyashiki JH, Hirota A, Kobayashi C, Ohyashiki K (2011) Age-related decrease of miRNA-92a levels in human CD8+ T-cells correlates with a reduction of naïve T lymphocytes. Immun Ageing 8(1):11.
    • (2011) Immun Ageing , vol.8 , Issue.1 , pp. 11
    • Ohyashiki, M.1    Ohyashiki, J.H.2    Hirota, A.3    Kobayashi, C.4    Ohyashiki, K.5
  • 27
    • 35348969892 scopus 로고    scopus 로고
    • Light-up Hoechst-DNA aptamer pair: Generation of an aptamer-selective fluorophore from a conventional DNA-staining dye
    • Sando S, Narita A, Aoyama Y (2007) Light-up Hoechst-DNA aptamer pair: Generation of an aptamer-selective fluorophore from a conventional DNA-staining dye. ChemBioChem 8(15):1795-1803.
    • (2007) ChemBioChem , vol.8 , Issue.15 , pp. 1795-1803
    • Sando, S.1    Narita, A.2    Aoyama, Y.3
  • 28
    • 67650506996 scopus 로고    scopus 로고
    • Rational design of ligands targeting triplet repeating transcripts that cause RNA dominant disease: Application to myotonic muscular dystrophy type 1 and spinocerebellar ataxia type 3
    • Pushechnikov A, et al. (2009) Rational design of ligands targeting triplet repeating transcripts that cause RNA dominant disease: Application to myotonic muscular dystrophy type 1 and spinocerebellar ataxia type 3. JAmChemSoc131(28):9767-9779.
    • (2009) J Am Chem Soc , vol.131 , Issue.28 , pp. 9767-9779
    • Pushechnikov, A.1
  • 29
    • 23144461051 scopus 로고    scopus 로고
    • Genes that mediate breast cancer metastasis to lung
    • Minn AJ, et al. (2005) Genes that mediate breast cancer metastasis to lung. Nature 436(7050):518-524.
    • (2005) Nature , vol.436 , Issue.7050 , pp. 518-524
    • Minn, A.J.1
  • 30
    • 0000179727 scopus 로고
    • Carcinogens are mutagens: A simple test system combining liver homogenates for activation and bacteria for detection
    • Ames BN, Durston WE, Yamasaki E, Lee FD (1973) Carcinogens are mutagens: A simple test system combining liver homogenates for activation and bacteria for detection. Proc Natl Acad Sci USA 70(8):2281-2285.
    • (1973) Proc Natl Acad Sci USA , vol.70 , Issue.8 , pp. 2281-2285
    • Ames, B.N.1    Durston, W.E.2    Yamasaki, E.3    Lee, F.D.4
  • 31
    • 0016685233 scopus 로고
    • Methods for detecting carcinogens and mutagens with the Salmonella/mammalian-microsome mutagenicity test
    • Ames BN, Mccann J, Yamasaki E (1975) Methods for detecting carcinogens and mutagens with the Salmonella/mammalian-microsome mutagenicity test. Mutat Res 31(6):347-364.
    • (1975) Mutat Res , vol.31 , Issue.6 , pp. 347-364
    • Ames, B.N.1    Mccann, J.2    Yamasaki, E.3
  • 32
    • 0035289779 scopus 로고    scopus 로고
    • Experimental and computational approaches to estimate solubility and permeability in drug discovery and development settings
    • Lipinski CA, Lombardo F, Dominy BW, Feeney PJ (2001) Experimental and computational approaches to estimate solubility and permeability in drug discovery and development settings. Adv Drug Deliv Rev 46(1-3):3-26.
    • (2001) Adv Drug Deliv Rev , vol.46 , Issue.1-3 , pp. 3-26
    • Lipinski, C.A.1    Lombardo, F.2    Dominy, B.W.3    Feeney, P.J.4
  • 33
    • 0027376439 scopus 로고
    • Antisense oligonucleotides as therapeutic agents-is the bullet really magical?
    • Stein CA, Cheng YC (1993) Antisense oligonucleotides as therapeutic agents-is the bullet really magical? Science 261(5124):1004-1012.
    • (1993) Science , vol.261 , Issue.5124 , pp. 1004-1012
    • Stein, C.A.1    Cheng, Y.C.2
  • 35
    • 1542269161 scopus 로고    scopus 로고
    • Progress in antisense technology
    • Crooke ST (2004) Progress in antisense technology. Annu Rev Med 55:61-95.
    • (2004) Annu Rev Med , vol.55 , pp. 61-95
    • Crooke, S.T.1
  • 36
    • 37349030751 scopus 로고    scopus 로고
    • A small molecule microarray platform to select RNA internal loop-ligand interactions
    • Childs-Disney JL, Wu M, Pushechnikov A, Aminova O, Disney MD (2007) A small molecule microarray platform to select RNA internal loop-ligand interactions. ACS Chem Biol 2(11):745-754.
    • (2007) ACS Chem Biol , vol.2 , Issue.11 , pp. 745-754
    • Childs-Disney, J.L.1    Wu, M.2    Pushechnikov, A.3    Aminova, O.4    Disney, M.D.5
  • 37
    • 11844278458 scopus 로고    scopus 로고
    • Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets
    • Lewis BP, Burge CB, Bartel DP (2005) Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets. Cell 120(1):15-20.
    • (2005) Cell , vol.120 , Issue.1 , pp. 15-20
    • Lewis, B.P.1    Burge, C.B.2    Bartel, D.P.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.