메뉴 건너뛰기




Volumn 16, Issue 4, 2015, Pages

Parameter optimization for constructing competing endogenous RNA regulatory network in glioblastoma multiforme and other cancers

Author keywords

[No Author keywords available]

Indexed keywords

COMPETING ENDOGENOUS RNA; MICRORNA; RNA; UNCLASSIFIED DRUG; MESSENGER RNA;

EID: 84969256731     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-16-S4-S1     Document Type: Article
Times cited : (34)

References (32)
  • 1
    • 1942435249 scopus 로고    scopus 로고
    • Micromanagers of gene expression: the potentially widespread influence of metazoan microRNAs
    • Bartel DP, Chen CZ: Micromanagers of gene expression: the potentially widespread influence of metazoan microRNAs. Nat Rev Genet. 2004, 5 (5): 396-400.
    • (2004) Nat Rev Genet , vol.5 , Issue.5 , pp. 396-400
    • Bartel, D.P.1    Chen, C.Z.2
  • 2
    • 11844278458 scopus 로고    scopus 로고
    • Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets
    • Lewis BP, Burge CB, Bartel DP: Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets. Cell. 2005, 120 (1): 15-20. 10.1016/j.cell.2004.12.035.
    • (2005) Cell , vol.120 , Issue.1 , pp. 15-20
    • Lewis, B.P.1    Burge, C.B.2    Bartel, D.P.3
  • 3
    • 70349320158 scopus 로고    scopus 로고
    • Causes and consequences of microRNA dysregulation in cancer
    • Croce CM: Causes and consequences of microRNA dysregulation in cancer. Nat Rev Genet. 2009, 10 (10): 704-714. 10.1038/nrg2634.
    • (2009) Nat Rev Genet , vol.10 , Issue.10 , pp. 704-714
    • Croce, C.M.1
  • 8
    • 78651293534 scopus 로고    scopus 로고
    • miRBase: integrating microRNA annotation and deep-sequencing data
    • Kozomara A, Griffiths-Jones S: miRBase: integrating microRNA annotation and deep-sequencing data. Nucleic Acids Res. 2011, 39 (Database): D152-D157. 10.1093/nar/gkq1027.
    • (2011) Nucleic Acids Res , vol.39 , Issue.Database , pp. D152-D157
    • Kozomara, A.1    Griffiths-Jones, S.2
  • 9
    • 80054681545 scopus 로고    scopus 로고
    • In vivo identification of tumor-suppressive PTEN ceRNAs in an oncogenic BRAF-induced mouse model of melanoma
    • Karreth FA, Tay Y, Perna D, Ala U, Tan SM, Rust AG, DeNicola G, Webster KA, Weiss D, Perez-Mancera PA, et al: In vivo identification of tumor-suppressive PTEN ceRNAs in an oncogenic BRAF-induced mouse model of melanoma. Cell. 2011, 147 (2): 382-395. 10.1016/j.cell.2011.09.032.
    • (2011) Cell , vol.147 , Issue.2 , pp. 382-395
    • Karreth, F.A.1    Tay, Y.2    Perna, D.3    Ala, U.4    Tan, S.M.5    Rust, A.G.6    DeNicola, G.7    Webster, K.A.8    Weiss, D.9    Perez-Mancera, P.A.10
  • 10
    • 80054689794 scopus 로고    scopus 로고
    • An extensive microRNA-mediated network of RNA-RNA interactions regulates established oncogenic pathways in glioblastoma
    • Sumazin P, Yang X, Chiu HS, Chung WJ, Iyer A, Llobet-Navas D, Rajbhandari P, Bansal M, Guarnieri P, Silva J, et al: An extensive microRNA-mediated network of RNA-RNA interactions regulates established oncogenic pathways in glioblastoma. Cell. 2011, 147 (2): 370-381. 10.1016/j.cell.2011.09.041.
    • (2011) Cell , vol.147 , Issue.2 , pp. 370-381
    • Sumazin, P.1    Yang, X.2    Chiu, H.S.3    Chung, W.J.4    Iyer, A.5    Llobet-Navas, D.6    Rajbhandari, P.7    Bansal, M.8    Guarnieri, P.9    Silva, J.10
  • 11
  • 12
    • 84894593080 scopus 로고    scopus 로고
    • Modeling competing endogenous RNA regulatory networks in glioblastoma multiforme
    • 2013 IEEE International Conference on: 18-21 Dec. 2013.
    • Chiu Y-C, Chuang EY, Hsiao T-H, Chen Y: Modeling competing endogenous RNA regulatory networks in glioblastoma multiforme. Bioinformatics and Biomedicine (BIBM), 2013 IEEE International Conference on: 18-21 Dec. 2013. 2013, 201-204.
    • (2013) Bioinformatics and Biomedicine (BIBM) , pp. 201-204
    • Chiu, Y.-C.1    Chuang, E.Y.2    Hsiao, T.-H.3    Chen, Y.4
  • 14
    • 84879486402 scopus 로고    scopus 로고
    • Modelling Competing Endogenous RNA Networks
    • Bosia C, Pagnani A, Zecchina R: Modelling Competing Endogenous RNA Networks. PLoS One. 2013, 8 (6): e66609-10.1371/journal.pone.0066609.
    • (2013) PLoS One , vol.8 , Issue.6 , pp. e66609
    • Bosia, C.1    Pagnani, A.2    Zecchina, R.3
  • 17
    • 54549108740 scopus 로고    scopus 로고
    • Comprehensive genomic characterization defines human glioblastoma genes and core pathways
    • Cancer Genome Atlas Research N: Comprehensive genomic characterization defines human glioblastoma genes and core pathways. Nature. 2008, 455 (7216): 1061-1068. 10.1038/nature07385.
    • (2008) Nature , vol.455 , Issue.7216 , pp. 1061-1068
  • 18
    • 80455154984 scopus 로고    scopus 로고
    • Weak seed-pairing stability and high target-site abundance decrease the proficiency of lsy-6 and other microRNAs
    • Garcia DM, Baek D, Shin C, Bell GW, Grimson A, Bartel DP: Weak seed-pairing stability and high target-site abundance decrease the proficiency of lsy-6 and other microRNAs. Nature structural & molecular biology. 2011, 18 (10): 1139-1146. 10.1038/nsmb.2115.
    • (2011) Nature structural & molecular biology , vol.18 , Issue.10 , pp. 1139-1146
    • Garcia, D.M.1    Baek, D.2    Shin, C.3    Bell, G.W.4    Grimson, A.5    Bartel, D.P.6
  • 19
    • 79959838081 scopus 로고    scopus 로고
    • Integrated genomic analyses of ovarian carcinoma
    • Cancer Genome Atlas Research N: Integrated genomic analyses of ovarian carcinoma. Nature. 2011, 474 (7353): 609-615. 10.1038/nature10166.
    • (2011) Nature , vol.474 , Issue.7353 , pp. 609-615
  • 20
    • 84866894408 scopus 로고    scopus 로고
    • Comprehensive genomic characterization of squamous cell lung cancers
    • Cancer Genome Atlas Research N: Comprehensive genomic characterization of squamous cell lung cancers. Nature. 2012, 489 (7417): 519-525. 10.1038/nature11404.
    • (2012) Nature , vol.489 , Issue.7417 , pp. 519-525
  • 21
    • 84878372012 scopus 로고    scopus 로고
    • Genomic and epigenomic landscapes of adult de novo acute myeloid leukemia
    • Cancer Genome Atlas Research N: Genomic and epigenomic landscapes of adult de novo acute myeloid leukemia. N Engl J Med. 2013, 368 (22): 2059-2074.
    • (2013) N Engl J Med , vol.368 , Issue.22 , pp. 2059-2074
  • 23
    • 61449172037 scopus 로고    scopus 로고
    • Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
    • Huang D, Sherman B, Lempicki R: Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat Protoc. 2009, 4: 44-57.
    • (2009) Nat Protoc , vol.4 , pp. 44-57
    • Huang, D.1    Sherman, B.2    Lempicki, R.3
  • 24
    • 84886910303 scopus 로고    scopus 로고
    • Emerging roles of competing endogenous RNAs in cancer: insights from the regulation of PTEN
    • de Giorgio A, Krell J, Harding V, Stebbing J, Castellano L: Emerging roles of competing endogenous RNAs in cancer: insights from the regulation of PTEN. Mol Cell Biol. 2013, 33 (20): 3976-3982. 10.1128/MCB.00683-13.
    • (2013) Mol Cell Biol , vol.33 , Issue.20 , pp. 3976-3982
    • de Giorgio, A.1    Krell, J.2    Harding, V.3    Stebbing, J.4    Castellano, L.5
  • 25
    • 84892573723 scopus 로고    scopus 로고
    • The multilayered complexity of ceRNA crosstalk and competition
    • Tay Y, Rinn J, Pandolfi PP: The multilayered complexity of ceRNA crosstalk and competition. Nature. 2014, 505 (7483): 344-352. 10.1038/nature12986.
    • (2014) Nature , vol.505 , Issue.7483 , pp. 344-352
    • Tay, Y.1    Rinn, J.2    Pandolfi, P.P.3
  • 26
    • 84901838697 scopus 로고    scopus 로고
    • Assessing the ceRNA hypothesis with quantitative measurements of miRNA and target abundance
    • Denzler R, Agarwal V, Stefano J, Bartel DP, Stoffel M: Assessing the ceRNA hypothesis with quantitative measurements of miRNA and target abundance. Mol Cell. 2014, 54 (5): 766-776. 10.1016/j.molcel.2014.03.045.
    • (2014) Mol Cell , vol.54 , Issue.5 , pp. 766-776
    • Denzler, R.1    Agarwal, V.2    Stefano, J.3    Bartel, D.P.4    Stoffel, M.5
  • 30
    • 77950348609 scopus 로고    scopus 로고
    • Genome-wide dissection of microRNA functions and cotargeting networks using gene set signatures
    • Tsang JS, Ebert MS, van Oudenaarden A: Genome-wide dissection of microRNA functions and cotargeting networks using gene set signatures. Mol Cell. 2010, 38 (1): 140-153. 10.1016/j.molcel.2010.03.007.
    • (2010) Mol Cell , vol.38 , Issue.1 , pp. 140-153
    • Tsang, J.S.1    Ebert, M.S.2    van Oudenaarden, A.3
  • 32
    • 79551587720 scopus 로고    scopus 로고
    • Cytoscape 2.8: new features for data integration and network visualization
    • Smoot ME, Ono K, Ruscheinski J, Wang PL, Ideker T: Cytoscape 2.8: new features for data integration and network visualization. Bioinformatics. 2011, 27 (3): 431-432. 10.1093/bioinformatics/btq675.
    • (2011) Bioinformatics , vol.27 , Issue.3 , pp. 431-432
    • Smoot, M.E.1    Ono, K.2    Ruscheinski, J.3    Wang, P.L.4    Ideker, T.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.