메뉴 건너뛰기




Volumn 26, Issue 4, 2016, Pages 252-260

Mining of Ruminant Microbial Phytase (RPHY1) from Metagenomic Data of Mehsani Buffalo Breed: Identification, Gene Cloning, and Characterization

Author keywords

Characterization; Cloning; Metagenomics; Phytase; Prevotella ruminicola; Rumen

Indexed keywords

HYBRID PROTEIN; PHYTASE; POLYHISTIDINE TAG; RUMINANT MICROBIAL PHYTASE 1; THIOREDOXIN; UNCLASSIFIED DRUG; ENZYME INHIBITOR; RECOMBINANT PROTEIN;

EID: 84967000333     PISSN: 14641801     EISSN: 16602412     Source Type: Journal    
DOI: 10.1159/000445321     Document Type: Article
Times cited : (11)

References (51)
  • 1
    • 0036967848 scopus 로고    scopus 로고
    • Phytic acid chemistry: Influence on phytin-phosphorus availability and phytase efficacy
    • Angel R, Tamim NM, Applegate TJ, Dhandu AS, Ellestad LE: Phytic acid chemistry: influence on phytin-phosphorus availability and phytase efficacy. J Appl Poult Res 2002; 11: 471-480.
    • (2002) J Appl Poult Res , vol.11 , pp. 471-480
    • Angel, R.1    Tamim, N.M.2    Applegate, T.J.3    Dhandu, A.S.4    Ellestad, L.E.5
  • 2
    • 0024453294 scopus 로고
    • Inositol phosphates and cell signalling
    • Berridge MJ, Irvine RF: Inositol phosphates and cell signalling. Nature 1989; 341: 197-205.
    • (1989) Nature , vol.341 , pp. 197-205
    • Berridge, M.J.1    Irvine, R.F.2
  • 4
    • 0034815761 scopus 로고    scopus 로고
    • Purification and properties of extracellular phytase from Bacillus sp. Khu-10
    • Choi YM, Suh HJ, Kim JM: Purification and properties of extracellular phytase from Bacillus sp. Khu-10. J Protein Chem 2001; 20: 287-292.
    • (2001) J Protein Chem , vol.20 , pp. 287-292
    • Choi, Y.M.1    Suh, H.J.2    Kim, J.M.3
  • 5
    • 0034057422 scopus 로고    scopus 로고
    • Energy consumption in the food chain: Comparing alternative options in food production and consumption
    • Chris ED, Klaas JK: Energy consumption in the food chain: comparing alternative options in food production and consumption. Ambio 2000; 29: 98-101.
    • (2000) Ambio , vol.29 , pp. 98-101
    • Chris, E.D.1    Klaas, J.K.2
  • 6
    • 0001746361 scopus 로고
    • Chemistry and biochemistry of inositol polyphosphates
    • Cosgrove DJ: Chemistry and biochemistry of inositol polyphosphates. Rev Pure Appl Chem 1966; 16: 209-214.
    • (1966) Rev Pure Appl Chem , vol.16 , pp. 209-214
    • Cosgrove, D.J.1
  • 7
    • 0032031671 scopus 로고    scopus 로고
    • Agricultural phosphorus and eutrophication: A symposium overview
    • Daniel TC, Sharpley AN, Lemunyon JL: Agricultural phosphorus and eutrophication: a symposium overview. J Environ Qual 1998; 27: 251-257.
    • (1998) J Environ Qual , vol.27 , pp. 251-257
    • Daniel, T.C.1    Sharpley, A.N.2    Lemunyon, J.L.3
  • 8
    • 4143080300 scopus 로고    scopus 로고
    • Expression of a temperature-sensitive esterase in a novel chaperone-based Escherichia coli strain
    • Ferrer M, Chernikova TN, Timmis KN, et al.: Expression of a temperature-sensitive esterase in a novel chaperone-based Escherichia coli strain. Appl Environ Microbiol 2004; 70: 4499-4504.
    • (2004) Appl Environ Microbiol , vol.70 , pp. 4499-4504
    • Ferrer, M.1    Chernikova, T.N.2    Timmis, K.N.3
  • 9
    • 0043122944 scopus 로고    scopus 로고
    • Ex- PASy: The proteomics server for in-depth protein knowledge and analysis
    • Gasteiger E, Gattiker A, Hoogland C, et al.: Ex- PASy: the proteomics server for in-depth protein knowledge and analysis. Nucleic Acids Res 2003; 31: 3784-3788.
    • (2003) Nucleic Acids Res , vol.31 , pp. 3784-3788
    • Gasteiger, E.1    Gattiker, A.2    Hoogland, C.3
  • 10
    • 33646002978 scopus 로고    scopus 로고
    • Toxic protein expression in Escherichia coli using a rhamnosebased tightly regulated and tunable promoter system
    • Giacalone MJ, Gentile AM, Lovitt BT, Berkley NL, Gunderson CW, Surber MW: Toxic protein expression in Escherichia coli using a rhamnosebased tightly regulated and tunable promoter system. Biotechniques 2006; 40: 355-364.
    • (2006) Biotechniques , vol.40 , pp. 355-364
    • Giacalone, M.J.1    Gentile, A.M.2    Lovitt, B.T.3    Berkley, N.L.4    Gunderson, C.W.5    Surber, M.W.6
  • 11
    • 0027225842 scopus 로고
    • Turnover of inositol pentakisphosphates, inositol hexakisphosphate and diphosphoinositol polyphosphates in primary cultured hepatocytes
    • Glennon MC, Shears SB: Turnover of inositol pentakisphosphates, inositol hexakisphosphate and diphosphoinositol polyphosphates in primary cultured hepatocytes. Biochem J 1993; 293: 583-590.
    • (1993) Biochem J , vol.293 , pp. 583-590
    • Glennon, M.C.1    Shears, S.B.2
  • 12
    • 0025295967 scopus 로고
    • Differential plasmid rescue from transgenic mouse DNAs into Escherichia coli methylation-restriction mutants
    • Grant SG, Jessee J, Bloom FR, Hanahan D: Differential plasmid rescue from transgenic mouse DNAs into Escherichia coli methylation-restriction mutants. Proc Natl Acad Sci USA1990; 87: 4645-4649.
    • (1990) Proc Natl Acad Sci USA , vol.87 , pp. 4645-4649
    • Grant, S.G.1    Jessee, J.2    Bloom, F.R.3    Hanahan, D.4
  • 13
    • 0036881265 scopus 로고    scopus 로고
    • The pathway of dephosphorylation of myoinositol hexakisphosphate by phytate-degrading enzymes of different Bacillus spp
    • Greiner R, Farouk A, Alminger ML, Carlsson NG: The pathway of dephosphorylation of myoinositol hexakisphosphate by phytate-degrading enzymes of different Bacillus spp. Can J Microbiol 2002a;48: 986-994.
    • (2002) Can J Microbiol , vol.48 , pp. 986-994
    • Greiner, R.1    Farouk, A.2    Alminger, M.L.3    Carlsson, N.G.4
  • 14
    • 0031570310 scopus 로고    scopus 로고
    • Purification and characterization of a phytase from Klebsiella terrigena
    • Greiner R, Haller E, Konietzny U, Jany KD: Purification and characterization of a phytase from Klebsiella terrigena. Arch Biochem Biophys 1997; 341: 201-206.
    • (1997) Arch Biochem Biophys , vol.341 , pp. 201-206
    • Greiner, R.1    Haller, E.2    Konietzny, U.3    Jany, K.D.4
  • 20
    • 0035176989 scopus 로고    scopus 로고
    • Use of fungal phytase to improve breadmaking performance of whole wheat bread
    • Haros M, Rosell CM, Benedito C: Use of fungal phytase to improve breadmaking performance of whole wheat bread. J Agric Food Chem 2001; 49: 5450-5454.
    • (2001) J Agric Food Chem , vol.49 , pp. 5450-5454
    • Haros, M.1    Rosell, C.M.2    Benedito, C.3
  • 22
    • 72949101011 scopus 로고    scopus 로고
    • Chitinase genes revealed and compared in bacterial isolates, DNA extracts and a metagenomic library from a phytopathogen- suppressive soil
    • Hjort K, Bergstrom M, Adesina MF, Jansson JK, Smalla K, Sjoling S: Chitinase genes revealed and compared in bacterial isolates, DNA extracts and a metagenomic library from a phytopathogen- suppressive soil. FEMS Microbiol Ecol 2010; 71: 197-207.
    • (2010) FEMS Microbiol Ecol , vol.71 , pp. 197-207
    • Hjort, K.1    Bergstrom, M.2    Adesina, M.F.3    Jansson, J.K.4    Smalla, K.5    Sjoling, S.6
  • 23
    • 67349257141 scopus 로고    scopus 로고
    • A novel beta-propeller phytase from Pedobacter nyackensis MJ11 CGMCC 2503 with potential as an aquatic feed additive
    • Huang H, Shao N, Wang Y, Luo H, Yang P, Zhou Z, Zhan Z, Yao B: A novel beta-propeller phytase from Pedobacter nyackensis MJ11 CGMCC 2503 with potential as an aquatic feed additive. Appl Microbiol Biotechnol 2009; 83: 249-259.
    • (2009) Appl Microbiol Biotechnol , vol.83 , pp. 249-259
    • Huang, H.1    Shao, N.2    Wang, Y.3    Luo, H.4    Yang, P.5    Zhou, Z.6    Zhan, Z.7    Yao, B.8
  • 24
    • 84859627968 scopus 로고    scopus 로고
    • Biocatalysts and small molecule products from metagenomic studies
    • Iqbal HA, Feng Z, Brady SF: Biocatalysts and small molecule products from metagenomic studies. Curr Opin Chem Biol 2012; 16: 109-116.
    • (2012) Curr Opin Chem Biol , vol.16 , pp. 109-116
    • Iqbal, H.A.1    Feng, Z.2    Brady, S.F.3
  • 25
    • 76349086053 scopus 로고    scopus 로고
    • Gene-targeted-metagenomics reveals extensive diversity of aromatic dioxygenase genes in the environment
    • Iwai S, Chai B, Sul WJ, Cole JR, Hashsham SA, Tiedje JM: Gene-targeted-metagenomics reveals extensive diversity of aromatic dioxygenase genes in the environment. ISME J 2010; 4: 279-285.
    • (2010) ISME J , vol.4 , pp. 279-285
    • Iwai, S.1    Chai, B.2    Sul, W.J.3    Cole, J.R.4    Hashsham, S.A.5    Tiedje, J.M.6
  • 26
    • 84864448769 scopus 로고    scopus 로고
    • Template-based protein structure modeling using the RaptorX web server
    • Kallberg M, Wang H, Wang S, Peng J, Wang Z, Lu H, Xu J: Template-based protein structure modeling using the RaptorX web server. Nat Protoc 2012; 7: 1511-1522.
    • (2012) Nat Protoc , vol.7 , pp. 1511-1522
    • Kallberg, M.1    Wang, H.2    Wang, S.3    Peng, J.4    Wang, Z.5    Lu, H.6    Xu, J.7
  • 27
    • 0037980138 scopus 로고    scopus 로고
    • Identification and characterization of coenzyme B12-dependent glycerol dehydratase- and diol dehydratase-encoding genes from metagenomic DNA libraries derived from enrichment cultures
    • Knietsch A, Bowien S, Whited G, Gottschalk G, Daniel R: Identification and characterization of coenzyme B12-dependent glycerol dehydratase- and diol dehydratase-encoding genes from metagenomic DNA libraries derived from enrichment cultures. Appl Environ Microbiol 2003; 69: 3048-3060.
    • (2003) Appl Environ Microbiol , vol.69 , pp. 3048-3060
    • Knietsch, A.1    Bowien, S.2    Whited, G.3    Gottschalk, G.4    Daniel, R.5
  • 28
    • 19944373812 scopus 로고    scopus 로고
    • Bacterial phytase: Potential application, in vivo function and regulation of its synthesis
    • Konietzny U, Greiner R: Bacterial phytase: potential application, in vivo function and regulation of its synthesis. Braz J Microbiol 2004; 35: 11-18.
    • (2004) Braz J Microbiol , vol.35 , pp. 11-18
    • Konietzny, U.1    Greiner, R.2
  • 29
    • 77953131338 scopus 로고    scopus 로고
    • In vitro and in vivo enzymatic dephosphorylation of phytate in maize-soya bean meal diets for broiler chickens by phytase of Mitsuokella jalaludinii
    • Lan GQ, Abdullah N, Jalaludin S, Ho YW: In vitro and in vivo enzymatic dephosphorylation of phytate in maize-soya bean meal diets for broiler chickens by phytase of Mitsuokella jalaludinii. Anim Feed Sci Tech 2010; 158: 155-164.
    • (2010) Anim Feed Sci Tech , vol.158 , pp. 155-164
    • Lan, G.Q.1    Abdullah, N.2    Jalaludin, S.3    Ho, Y.W.4
  • 30
    • 84913588506 scopus 로고    scopus 로고
    • Elimination of a disulfide bridge in Aspergillus Niger NRRL 3135 phytase (PhyA) enhances heat tolerance and optimizes its temperature versus activity profile
    • Mullaney E, Sethumadhavan K, Boone S, Lei XG, Ullah AHJ: Elimination of a disulfide bridge in Aspergillus niger NRRL 3135 phytase (PhyA) enhances heat tolerance and optimizes its temperature versus activity profile. Adv Biol Chem 2012; 2: 372-378.
    • (2012) Adv Biol Chem , vol.2 , pp. 372-378
    • Mullaney, E.1    Sethumadhavan, K.2    Boone, S.3    Lei, X.G.4    Ullah, A.H.J.5
  • 31
  • 32
    • 84930624226 scopus 로고    scopus 로고
    • Isolation of chitinolytic Clostridium sp. NCR from Mehsani buffalo rumen, its genomic analysis and potential role in rumen
    • Nathani NM, Duggirala SM, Chandra Shekar M, Kothari RK, Joshi CG: Isolation of chitinolytic Clostridium sp. NCR from Mehsani buffalo rumen, its genomic analysis and potential role in rumen. Genom Data 2015a;5: 109-111.
    • (2015) Genom Data , vol.5 , pp. 109-111
    • Nathani, N.M.1    Duggirala, S.M.2    Chandra Shekar, M.3    Kothari, R.K.4    Joshi, C.G.5
  • 33
    • 84940668270 scopus 로고    scopus 로고
    • Functional characterization reveals novel putative coding sequences in Prevotella ruminicola genome extracted from rumen metagenomic studies
    • Nathani NM, Kothari RK, Patel AK, Joshi CG: Functional characterization reveals novel putative coding sequences in Prevotella ruminicola genome extracted from rumen metagenomic studies. J Mol Microbiol Biotechnol 2015b;25: 292-299.
    • (2015) J Mol Microbiol Biotechnol , vol.25 , pp. 292-299
    • Nathani, N.M.1    Kothari, R.K.2    Patel, A.K.3    Joshi, C.G.4
  • 34
    • 1642578253 scopus 로고    scopus 로고
    • Biochemical properties and substrate specificities of alkaline and histidine acid phytases
    • Oh BC, Choi WC, Park S, Kim YO, Oh TK: Biochemical properties and substrate specificities of alkaline and histidine acid phytases. Appl Microbiol Biotechnol 2004; 63: 362-372.
    • (2004) Appl Microbiol Biotechnol , vol.63 , pp. 362-372
    • Oh, B.C.1    Choi, W.C.2    Park, S.3    Kim, Y.O.4    Oh, T.K.5
  • 35
    • 84977878037 scopus 로고    scopus 로고
    • Isolation and characterization of novel multifunctional recombinant family 26 glycoside hydrolase from Mehsani buffalo rumen metagenome
    • Patel AB, Patel AK, Shah MP, Parikh IK, Joshi CG: Isolation and characterization of novel multifunctional recombinant family 26 glycoside hydrolase from Mehsani buffalo rumen metagenome. Biotechnol Appl Biochem 2015, DOI: 10.1002/bab.1358.
    • (2015) Biotechnol Appl Biochem
    • Patel, A.B.1    Patel, A.K.2    Shah, M.P.3    Parikh, I.K.4    Joshi, C.G.5
  • 36
    • 0025381380 scopus 로고
    • Recent advances in the chemistry and biochemistry of inositol phosphates of biological interest
    • Potter BV: Recent advances in the chemistry and biochemistry of inositol phosphates of biological interest. Nat Prod Rep 1990; 7: 1-24.
    • (1990) Nat Prod Rep , vol.7 , pp. 1-24
    • Potter, B.V.1
  • 39
    • 38749083839 scopus 로고    scopus 로고
    • The histidine phosphatase superfamily: Structure and function
    • Rigden DJ: The histidine phosphatase superfamily: structure and function. Biochem J 2008; 409: 333-348.
    • (2008) Biochem J , vol.409 , pp. 333-348
    • Rigden, D.J.1
  • 40
    • 21144472981 scopus 로고
    • Fish-meal and alternate sources of protein in fish feeds update
    • Rumsey GL: Fish-meal and alternate sources of protein in fish feeds update. Fisheries 1993; 18: 14-19.
    • (1993) Fisheries , vol.18 , pp. 14-19
    • Rumsey, G.L.1
  • 42
    • 0030269964 scopus 로고    scopus 로고
    • The rumen: A unique source of enzymes for enhancing livestock production
    • Selinger LB, Forsberg CW, Cheng KJ: The rumen: a unique source of enzymes for enhancing livestock production. Anaerobe 1996; 2: 263-284.
    • (1996) Anaerobe , vol.2 , pp. 263-284
    • Selinger, L.B.1    Forsberg, C.W.2    Cheng, K.J.3
  • 43
    • 79953210780 scopus 로고    scopus 로고
    • Metagenomic analyses: Past and future trends
    • Simon C, Daniel R: Metagenomic analyses: past and future trends. Appl Environ Microbiol 2011; 77: 1153-1161.
    • (2011) Appl Environ Microbiol , vol.77 , pp. 1153-1161
    • Simon, C.1    Daniel, R.2
  • 44
    • 0027536427 scopus 로고
    • The detection, purification, structural characterization, and metabolism of diphosphoinositol pentakisphosphate(s) and bisdiphosphoinositol tetrakisphosphate(s)
    • Stephens L, Radenberg T, Thiel U, Vogel G, Khoo KH, Dell A, Jackson TR, Hawkins PT, Mayr GW: The detection, purification, structural characterization, and metabolism of diphosphoinositol pentakisphosphate(s) and bisdiphosphoinositol tetrakisphosphate(s). J Biol Chem 1993; 268: 4009-4015.
    • (1993) J Biol Chem , vol.268 , pp. 4009-4015
    • Stephens, L.1    Radenberg, T.2    Thiel, U.3    Vogel, G.4    Khoo, K.H.5    Dell, A.6    Jackson, T.R.7    Hawkins, P.T.8    Mayr, G.W.9
  • 45
    • 10644275363 scopus 로고    scopus 로고
    • Optimized expression of soluble cyclomaltodextrinase of thermophilic origin in Escherichia coli by using a soluble fusion-tag and by tuning of inducer concentration
    • Turner P, Holst O, Karlsson EN: Optimized expression of soluble cyclomaltodextrinase of thermophilic origin in Escherichia coli by using a soluble fusion-tag and by tuning of inducer concentration. Protein Expr Purif 2005; 39: 54-60.
    • (2005) Protein Expr Purif , vol.39 , pp. 54-60
    • Turner, P.1    Holst, O.2    Karlsson, E.N.3
  • 46
    • 0036315591 scopus 로고    scopus 로고
    • Molecular cloning and the biochemical characterization of two novel phytases from B. Subtilis 168 and B. Licheniformis
    • Tye AJ, Siu FK, Leung TY, Lim BL: Molecular cloning and the biochemical characterization of two novel phytases from B. subtilis 168 and B. licheniformis. Appl Microbiol Biotechnol 2002; 59: 190-197.
    • (2002) Appl Microbiol Biotechnol , vol.59 , pp. 190-197
    • Tye, A.J.1    Siu, F.K.2    Leung, T.Y.3    Lim, B.L.4
  • 47
    • 75249105048 scopus 로고    scopus 로고
    • Deep sequencing of a dimethylsulfoniopropionatedegrading gene (dmdA) by using PCR primer pairs designed on the basis of marine metagenomic data
    • Varaljay VA, Howard EC, Sun S, Moran MA: Deep sequencing of a dimethylsulfoniopropionatedegrading gene (dmdA) by using PCR primer pairs designed on the basis of marine metagenomic data. Appl Environ Microbiol 2010; 76: 609-617.
    • (2010) Appl Environ Microbiol , vol.76 , pp. 609-617
    • Varaljay, V.A.1    Howard, E.C.2    Sun, S.3    Moran, M.A.4
  • 51
    • 78149471361 scopus 로고    scopus 로고
    • High level expression of an acid-stable phytase from Citrobacter freundii in Pichia pastoris
    • Zhao W, Xiong A, Fu X, Gao F, Tian Y, Peng R: High level expression of an acid-stable phytase from Citrobacter freundii in Pichia pastoris. Appl Biochem Biotechnol 2010; 162: 2157-2165.
    • (2010) Appl Biochem Biotechnol , vol.162 , pp. 2157-2165
    • Zhao, W.1    Xiong, A.2    Fu, X.3    Gao, F.4    Tian, Y.5    Peng, R.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.