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Volumn 32, Issue 9, 2016, Pages 1430-1432

UCSC Data Integrator and Variant Annotation Integrator

Author keywords

[No Author keywords available]

Indexed keywords

ANIMAL; GENETIC DATABASE; GENOME; GENOMICS; HUMAN; INTERNET; SOFTWARE;

EID: 84966429442     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btv766     Document Type: Article
Times cited : (50)

References (15)
  • 1
    • 84862506964 scopus 로고    scopus 로고
    • A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; Iso-2; iso-3
    • Cingolani, P. et al. (2012) A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; iso-2; iso-3. Fly (Austin), 6, 80-92.
    • (2012) Fly (Austin , vol.6 , pp. 80-92
    • Cingolani, P.1
  • 2
    • 79960405019 scopus 로고    scopus 로고
    • The variant call format and VCFtools
    • Danecek, P. et al. (2011) The variant call format and VCFtools. Bioinformatics, 27, 2156-2158.
    • (2011) Bioinformatics , vol.27 , pp. 2156-2158
    • Danecek, P.1
  • 3
    • 22044443709 scopus 로고    scopus 로고
    • The Sequence Ontology: A tool for the unification of genome annotations
    • Eilbeck, K. et al. (2005) The Sequence Ontology: a tool for the unification of genome annotations. Genome Biol., 6, R44.
    • (2005) Genome Biol. , vol.6 , pp. R44
    • Eilbeck, K.1
  • 4
    • 0037250168 scopus 로고    scopus 로고
    • The UCSC Genome browser database
    • Karolchik, D. et al. (2003) The UCSC Genome browser database. Nucleic Acids Res., 31, 51-54.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 51-54
    • Karolchik, D.1
  • 5
    • 0347755531 scopus 로고    scopus 로고
    • The UCSC table browser data retrieval tool
    • Karolchik, D. et al. (2004) The UCSC table browser data retrieval tool. Nucleic Acids Res., 32, D493-D496.
    • (2004) Nucleic Acids Res. , vol.32 , pp. D493-D496
    • Karolchik, D.1
  • 6
    • 84957942283 scopus 로고    scopus 로고
    • DbNSFP v3.0: A one-stop database of functional predictions and annotations for human non-synonymous and splice site SNVs
    • Liu, X. et al. (2016) dbNSFP v3.0: a one-stop database of functional predictions and annotations for human non-synonymous and splice site SNVs. Hum. Mutat., 37, 235-241.
    • (2016) Hum. Mutat. , vol.37 , pp. 235-241
    • Liu, X.1
  • 7
    • 84901410645 scopus 로고    scopus 로고
    • Choice of transcripts and software has a large effect on variant annotation
    • McCarthy, D.J. et al. (2014) Choice of transcripts and software has a large effect on variant annotation. Genome Med., 6, 26.
    • (2014) Genome Med. , vol.6 , pp. 26
    • McCarthy, D.J.1
  • 8
    • 77955405475 scopus 로고    scopus 로고
    • Deriving the consequences of genomic variants with the Ensembl API and SNP Effect Predictor
    • McLaren, W. et al. (2010) Deriving the consequences of genomic variants with the Ensembl API and SNP Effect Predictor. Bioinformatics, 26, 2069-2070.
    • (2010) Bioinformatics , vol.26 , pp. 2069-2070
    • McLaren, W.1
  • 9
    • 74949092081 scopus 로고    scopus 로고
    • Detection of nonneutral substitution rates on mammalian phylogenies
    • Pollard, K.S. et al. (2010) Detection of nonneutral substitution rates on mammalian phylogenies. Genome Res., 20, 110-121.
    • (2010) Genome Res. , vol.20 , pp. 110-121
    • Pollard, K.S.1
  • 10
    • 84891814834 scopus 로고    scopus 로고
    • Track data hubs enable visualization of user-defined genome-wide annotations on the UCSC Genome Browser
    • Raney, B.J. et al. (2014) Track data hubs enable visualization of user-defined genome-wide annotations on the UCSC Genome Browser. Bioinformatics, 30, 1003-1005.
    • (2014) Bioinformatics , vol.30 , pp. 1003-1005
    • Raney, B.J.1
  • 11
    • 84976878634 scopus 로고    scopus 로고
    • The ucsc genome browser database: 2016 update
    • Speir, M.L. et al. (2016) The UCSC Genome Browser database: 2016 update. Nucleic Acids Res., 44, D717-D725.
    • (2016) Nucleic Acids Res. , vol.44 , pp. D717-D725
    • Speir, M.L.1
  • 12
    • 23744458086 scopus 로고    scopus 로고
    • Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes
    • Siepel, A. et al. (2005) Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes. Genome Res., 15, 1034-1050.
    • (2005) Genome Res. , vol.15 , pp. 1034-1050
    • Siepel, A.1
  • 13
    • 84865790047 scopus 로고    scopus 로고
    • An integrated encyclopedia of DNA elements in the human genome
    • Encode Project Consortium T.
    • Encode Project Consortium, T. (2012) An integrated encyclopedia of DNA elements in the human genome. Nature, 489, 57-74.
    • (2012) Nature , vol.489 , pp. 57-74
  • 14
    • 77956534324 scopus 로고    scopus 로고
    • ANNOVAR: Functional annotation of genetic variants from high-Throughput sequencing data
    • Wang, K. et al. (2010) ANNOVAR: functional annotation of genetic variants from high-Throughput sequencing data. Nucleic Acids Res., 38, e164.
    • (2010) Nucleic Acids Res. , vol.38 , pp. e164
    • Wang, K.1
  • 15
    • 33846062023 scopus 로고    scopus 로고
    • Database resources of the National Center for Biotechnology Information
    • Wheeler, D.L. et al. (2007) Database resources of the National Center for Biotechnology Information. Nucleic Acids Res., 35, D5-12.
    • (2007) Nucleic Acids Res. , vol.35 , pp. D5-D12
    • Wheeler, D.L.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.