-
1
-
-
84920508228
-
Circulating tumor DNA as a liquid biopsy for cancer
-
Heitzer, E., Ulz, P., Geigl, J.B. Circulating tumor DNA as a liquid biopsy for cancer. Clin. Chem. 61, 112-123 (2015).
-
(2015)
Clin. Chem.
, vol.61
, pp. 112-123
-
-
Heitzer, E.1
Ulz, P.2
Geigl, J.B.3
-
2
-
-
51349141191
-
Circulating mutant DNA to assess tumor dynamics
-
Diehl, F. et al. Circulating mutant DNA to assess tumor dynamics. Nat. Med. 14, 985-990 (2008).
-
(2008)
Nat. Med.
, vol.14
, pp. 985-990
-
-
Diehl, F.1
-
3
-
-
84896371874
-
Detection of circulating tumor DNA in early-and late-stage human malignancies
-
Bettegowda, C. et al. Detection of circulating tumor DNA in early-and late-stage human malignancies. Sci. Transl. Med. 6, 224-24 (2014).
-
(2014)
Sci. Transl. Med.
, vol.6
, pp. 224-324
-
-
Bettegowda, C.1
-
4
-
-
84929860892
-
Potential clinical utility of ultrasensitive circulating tumor DNA detection with CAPP-Seq
-
Bratman, S.V., Newman, A.M., Alizadeh, A.A., Diehn, M. Potential clinical utility of ultrasensitive circulating tumor DNA detection with CAPP-Seq. Expert Rev. Mol. Diagn. 15, 715-719 (2015).
-
(2015)
Expert Rev. Mol. Diagn.
, vol.15
, pp. 715-719
-
-
Bratman, S.V.1
Newman, A.M.2
Alizadeh, A.A.3
Diehn, M.4
-
5
-
-
84898542288
-
Liquid biopsies: Genotyping circulating tumor DNA
-
Diaz, L.A. Jr., Bardelli, A. Liquid biopsies: genotyping circulating tumor DNA. J. Clin. Oncol. 32, 579-586 (2014).
-
(2014)
J. Clin. Oncol.
, vol.32
, pp. 579-586
-
-
Diaz, L.A.1
Bardelli, A.2
-
6
-
-
84931287940
-
Noninvasive monitoring of diffuse large B-cell lymphoma by immunoglobulin high-throughput sequencing
-
Kurtz, D.M. et al. Noninvasive monitoring of diffuse large B-cell lymphoma by immunoglobulin high-throughput sequencing. Blood 125, 3679-3687 (2015).
-
(2015)
Blood
, vol.125
, pp. 3679-3687
-
-
Kurtz, D.M.1
-
7
-
-
84943328606
-
Exome sequencing of cell-free DNA from metastatic cancer patients identifies clinically actionable mutations distinct from primary disease
-
Butler, T.M. et al. Exome sequencing of cell-free DNA from metastatic cancer patients identifies clinically actionable mutations distinct from primary disease. PLoS One 10, e0136407 (2015).
-
(2015)
PLoS One
, vol.10
, pp. e0136407
-
-
Butler, T.M.1
-
8
-
-
84903218109
-
An ultrasensitive method for quantitating circulating tumor DNA with broad patient coverage
-
Newman, A.M. et al. An ultrasensitive method for quantitating circulating tumor DNA with broad patient coverage. Nat. Med. 20, 548-554 (2014).
-
(2014)
Nat. Med.
, vol.20
, pp. 548-554
-
-
Newman, A.M.1
-
9
-
-
81855208762
-
Quantitative detection of EGFR mutations in circulating tumor DNA derived from lung adenocarcinomas
-
Taniguchi, K. et al. Quantitative detection of EGFR mutations in circulating tumor DNA derived from lung adenocarcinomas. Clin. Cancer Res. 17, 7808-7815 (2011).
-
(2011)
Clin. Cancer Res.
, vol.17
, pp. 7808-7815
-
-
Taniguchi, K.1
-
10
-
-
84055200527
-
Accurate sampling and deep sequencing of the HIV-1 protease gene using a Primer ID
-
Jabara, C.B., Jones, C.D., Roach, J.,erson, J.A., Swanstrom, R. Accurate sampling and deep sequencing of the HIV-1 protease gene using a Primer ID. Proc. Natl. Acad. Sci. USA 108, 20166-20171 (2011).
-
(2011)
Proc. Natl. Acad. Sci. USA
, vol.108
, pp. 20166-20171
-
-
Jabara, C.B.1
Jones, C.D.2
Roach, J.3
Erson, J.A.4
Swanstrom, R.5
-
11
-
-
79959353421
-
Detection and quantification of rare mutations with massively parallel sequencing
-
Kinde, I., Wu, J., Papadopoulos, N., Kinzler, K.W., Vogelstein, B. Detection and quantification of rare mutations with massively parallel sequencing. Proc. Natl. Acad. Sci. USA 108, 9530-9535 (2011).
-
(2011)
Proc. Natl. Acad. Sci. USA
, vol.108
, pp. 9530-9535
-
-
Kinde, I.1
Wu, J.2
Papadopoulos, N.3
Kinzler, K.W.4
Vogelstein, B.5
-
12
-
-
84865979581
-
Detection of ultra-rare mutations by next-generation sequencing
-
Schmitt, M.W. et al. Detection of ultra-rare mutations by next-generation sequencing. Proc. Natl. Acad. Sci. USA 109, 14508-14513 (2012).
-
(2012)
Proc. Natl. Acad. Sci. USA
, vol.109
, pp. 14508-14513
-
-
Schmitt, M.W.1
-
13
-
-
84908181086
-
Detecting ultralow-frequency mutations by Duplex Sequencing
-
Kennedy, S.R. et al. Detecting ultralow-frequency mutations by Duplex Sequencing. Nat. Protoc. 9, 2586-2606 (2014).
-
(2014)
Nat. Protoc.
, vol.9
, pp. 2586-2606
-
-
Kennedy, S.R.1
-
14
-
-
84965043957
-
Targeted single molecule mutation detection with massively parallel sequencing
-
Gregory, M.T. et al. Targeted single molecule mutation detection with massively parallel sequencing. Nucleic Acids Res. 44, e22 (2016).
-
(2016)
Nucleic Acids Res.
, vol.44
, pp. e22
-
-
Gregory, M.T.1
-
15
-
-
84939561586
-
High-fidelity target sequencing of individual molecules identified using barcode sequences: De novo detection and absolute quantitation of mutations in plasma cell-free DNA from cancer patients
-
Kukita, Y. et al. High-fidelity target sequencing of individual molecules identified using barcode sequences: de novo detection and absolute quantitation of mutations in plasma cell-free DNA from cancer patients. DNA Res. 22, 269-277 (2015).
-
(2015)
DNA Res.
, vol.22
, pp. 269-277
-
-
Kukita, Y.1
-
16
-
-
84889659729
-
High-throughput DNA sequencing errors are reduced by orders of magnitude using circle sequencing
-
Lou, D.I. et al. High-throughput DNA sequencing errors are reduced by orders of magnitude using circle sequencing. Proc. Natl. Acad. Sci. USA 110, 19872-19877 (2013).
-
(2013)
Proc. Natl. Acad. Sci. USA
, vol.110
, pp. 19872-19877
-
-
Lou, D.I.1
-
17
-
-
84928929909
-
Sequencing small genomic targets with high efficiency and extreme accuracy
-
Schmitt, M.W. et al. Sequencing small genomic targets with high efficiency and extreme accuracy. Nat. Methods 12, 423-425 (2015).
-
(2015)
Nat. Methods
, vol.12
, pp. 423-425
-
-
Schmitt, M.W.1
-
18
-
-
84946719441
-
Cerebrospinal fluid-derived circulating tumour DNA better represents the genomic alterations of brain tumours than plasma
-
De Mattos-Arruda, L. et al. Cerebrospinal fluid-derived circulating tumour DNA better represents the genomic alterations of brain tumours than plasma. Nat. Commun. 6, 8839 (2015).
-
(2015)
Nat. Commun.
, vol.6
, pp. 8839
-
-
De Mattos-Arruda, L.1
-
19
-
-
84876020288
-
Discovery and characterization of artifactual mutations in deep coverage targeted capture sequencing data due to oxidative DNA damage during sample preparation
-
Costello, M. et al. Discovery and characterization of artifactual mutations in deep coverage targeted capture sequencing data due to oxidative DNA damage during sample preparation. Nucleic Acids Res. 41, e67 (2013).
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. e67
-
-
Costello, M.1
-
20
-
-
84933037774
-
Cytosine deamination is a major cause of baseline noise in next-generation sequencing
-
Chen, G., Mosier, S., Gocke, C.D., Lin, M.T., Eshleman, J.R. Cytosine deamination is a major cause of baseline noise in next-generation sequencing. Mol. Diagn. Ther. 18, 587-593 (2014).
-
(2014)
Mol. Diagn. Ther.
, vol.18
, pp. 587-593
-
-
Chen, G.1
Mosier, S.2
Gocke, C.D.3
Lin, M.T.4
Eshleman, J.R.5
-
21
-
-
0017360626
-
Free DNA in the serum of cancer patients and the effect of therapy
-
Leon, S.A., Shapiro, B., Sklaroff, D.M., Yaros, M.J. Free DNA in the serum of cancer patients and the effect of therapy. Cancer Res. 37, 646-650 (1977).
-
(1977)
Cancer Res.
, vol.37
, pp. 646-650
-
-
Leon, S.A.1
Shapiro, B.2
Sklaroff, D.M.3
Yaros, M.J.4
-
22
-
-
34548069945
-
Oncogenic PIK3CA mutations occur in epidermal nevi and seborrheic keratoses with a characteristic mutation pattern
-
Hafner, C. et al. Oncogenic PIK3CA mutations occur in epidermal nevi and seborrheic keratoses with a characteristic mutation pattern. Proc. Natl. Acad. Sci. USA 104, 13450-13454 (2007).
-
(2007)
Proc. Natl. Acad. Sci. USA
, vol.104
, pp. 13450-13454
-
-
Hafner, C.1
-
23
-
-
84862537727
-
Detection of tumor PIK3CA status in metastatic breast cancer using peripheral blood
-
Higgins, M.J. et al. Detection of tumor PIK3CA status in metastatic breast cancer using peripheral blood. Clin. Cancer Res. 18, 3462-3469 (2012).
-
(2012)
Clin. Cancer Res.
, vol.18
, pp. 3462-3469
-
-
Higgins, M.J.1
-
24
-
-
84928746232
-
Rociletinib in EGFR-mutated non-small-cell lung cancer
-
Sequist, L.V. et al. Rociletinib in EGFR-mutated non-small-cell lung cancer. N. Engl. J. Med. 372, 1700-1709 (2015).
-
(2015)
N. Engl. J. Med.
, vol.372
, pp. 1700-1709
-
-
Sequist, L.V.1
-
25
-
-
84896539307
-
Noninvasive detection of response and resistance in EGFR-mutant lung cancer using quantitative next-generation genotyping of cell-free plasma DNA
-
Oxnard, G.R. et al. Noninvasive detection of response and resistance in EGFR-mutant lung cancer using quantitative next-generation genotyping of cell-free plasma DNA. Clin. Cancer Res. 20, 1698-1705 (2014).
-
(2014)
Clin. Cancer Res.
, vol.20
, pp. 1698-1705
-
-
Oxnard, G.R.1
-
26
-
-
4444344330
-
EGF receptor gene mutations are common in lung cancers from "never smokers" and are associated with sensitivity of tumors to gefitinib and erlotinib
-
Pao, W. et al. EGF receptor gene mutations are common in lung cancers from "never smokers" and are associated with sensitivity of tumors to gefitinib and erlotinib. Proc. Natl. Acad. Sci. USA 101, 13306-13311 (2004).
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 13306-13311
-
-
Pao, W.1
-
27
-
-
18244371651
-
Acquired resistance of lung adenocarcinomas to gefitinib or erlotinib is associated with a second mutation in the EGFR kinase domain
-
Pao, W. et al. Acquired resistance of lung adenocarcinomas to gefitinib or erlotinib is associated with a second mutation in the EGFR kinase domain. PLoS Med. 2, e73 (2005).
-
(2005)
PLoS Med.
, vol.2
, pp. e73
-
-
Pao, W.1
-
28
-
-
79953118839
-
Genotypic and histological evolution of lung cancers acquiring resistance to EGFR inhibitors
-
Sequist, L.V. et al. Genotypic and histological evolution of lung cancers acquiring resistance to EGFR inhibitors. Sci. Transl. Med. 3, 75-26 (2011).
-
(2011)
Sci. Transl. Med.
, vol.3
, pp. 75-126
-
-
Sequist, L.V.1
-
29
-
-
84906250256
-
Gefitinib treatment in EGFR mutated caucasian NSCLC: Circulating-free tumor DNA as a surrogate for determination of EGFR status
-
Douillard, J.Y. et al. Gefitinib treatment in EGFR mutated caucasian NSCLC: circulating-free tumor DNA as a surrogate for determination of EGFR status. J. Thorac. Oncol. 9, 1345-1353 (2014).
-
(2014)
J. Thorac. Oncol.
, vol.9
, pp. 1345-1353
-
-
Douillard, J.Y.1
-
30
-
-
84938399710
-
Detection and dynamic changes of EGFR mutations from circulating tumor DNA as a predictor of survival outcomes in NSCLC patients treated with first-line intercalated erlotinib and chemotherapy
-
Mok, T. et al. Detection and dynamic changes of EGFR mutations from circulating tumor DNA as a predictor of survival outcomes in NSCLC patients treated with first-line intercalated erlotinib and chemotherapy. Clin. Cancer Res. 21, 3196-3203 (2015).
-
(2015)
Clin. Cancer Res.
, vol.21
, pp. 3196-3203
-
-
Mok, T.1
-
31
-
-
84862999938
-
Emergence of KRAS mutations and acquired resistance to anti-EGFR therapy in colorectal cancer
-
Misale, S. et al. Emergence of KRAS mutations and acquired resistance to anti-EGFR therapy in colorectal cancer. Nature 486, 532-536 (2012).
-
(2012)
Nature
, vol.486
, pp. 532-536
-
-
Misale, S.1
-
32
-
-
84877579861
-
Non-invasive analysis of acquired resistance to cancer therapy by sequencing of plasma DNA
-
Murtaza, M. et al. Non-invasive analysis of acquired resistance to cancer therapy by sequencing of plasma DNA. Nature 497, 108-112 (2013).
-
(2013)
Nature
, vol.497
, pp. 108-112
-
-
Murtaza, M.1
-
33
-
-
84930755018
-
Acquired EGFR C797S mutation mediates resistance to AZD9291 in non-small cell lung cancer harboring EGFR T790M
-
Thress, K.S. et al. Acquired EGFR C797S mutation mediates resistance to AZD9291 in non-small cell lung cancer harboring EGFR T790M. Nat. Med. 21, 560-562 (2015).
-
(2015)
Nat. Med.
, vol.21
, pp. 560-562
-
-
Thress, K.S.1
-
34
-
-
84942521073
-
Early prediction of response to tyrosine kinase inhibitors by quantification of EGFR mutations in plasma of NSCLC patients
-
Marchetti, A. et al. Early prediction of response to tyrosine kinase inhibitors by quantification of EGFR mutations in plasma of NSCLC patients. J. Thorac. Oncol. 10, 1437-1443 (2015).
-
(2015)
J. Thorac. Oncol.
, vol.10
, pp. 1437-1443
-
-
Marchetti, A.1
-
35
-
-
84875520648
-
Analysis of circulating tumor DNA to monitor metastatic breast cancer
-
Dawson, S.J. et al. Analysis of circulating tumor DNA to monitor metastatic breast cancer. N. Engl. J. Med. 368, 1199-1209 (2013).
-
(2013)
N. Engl. J. Med.
, vol.368
, pp. 1199-1209
-
-
Dawson, S.J.1
-
36
-
-
84940416459
-
Mutation tracking in circulating tumor DNA predicts relapse in early breast cancer
-
Garcia-Murillas, I. et al. Mutation tracking in circulating tumor DNA predicts relapse in early breast cancer. Sci. Transl. Med. 7, 302ra133 (2015).
-
(2015)
Sci. Transl. Med.
, vol.7
, pp. 302-333
-
-
Garcia-Murillas, I.1
-
37
-
-
84933673408
-
Circulating tumour DNA and CT monitoring in patients with untreated diffuse large B-cell lymphoma: A correlative biomarker study
-
Roschewski, M. et al. Circulating tumour DNA and CT monitoring in patients with untreated diffuse large B-cell lymphoma: a correlative biomarker study. Lancet Oncol. 16, 541-549 (2015).
-
(2015)
Lancet Oncol.
, vol.16
, pp. 541-549
-
-
Roschewski, M.1
-
38
-
-
84938944737
-
Evaluation of hybridization capture versus amplicon-based methods for whole-exome sequencing
-
Samorodnitsky, E. et al. Evaluation of hybridization capture versus amplicon-based methods for whole-exome sequencing. Hum. Mutat. 36, 903-914 (2015).
-
(2015)
Hum. Mutat.
, vol.36
, pp. 903-914
-
-
Samorodnitsky, E.1
-
39
-
-
84942521554
-
Broad, hybrid capture-based next-generation sequencing identifies actionable genomic alterations in lung adenocarcinomas otherwise negative for such alterations by other genomic testing approaches
-
Drilon, A. et al. Broad, hybrid capture-based next-generation sequencing identifies actionable genomic alterations in lung adenocarcinomas otherwise negative for such alterations by other genomic testing approaches. Clin. Cancer Res. 21, 3631-3639 (2015).
-
(2015)
Clin. Cancer Res.
, vol.21
, pp. 3631-3639
-
-
Drilon, A.1
-
40
-
-
84883897500
-
ACMG clinical laboratory standards for next-generation sequencing
-
Rehm, H.L. et al. ACMG clinical laboratory standards for next-generation sequencing. Genet. Med. 15, 733-747 (2013).
-
(2013)
Genet. Med.
, vol.15
, pp. 733-747
-
-
Rehm, H.L.1
-
41
-
-
84883410995
-
Challenges to implementation of an epidermal growth factor receptor testing strategy for non-small-cell lung cancer in a publicly funded health care system
-
Ellis, P.M., Verma, S., Sehdev, S., Younus, J., Leighl, N.B. Challenges to implementation of an epidermal growth factor receptor testing strategy for non-small-cell lung cancer in a publicly funded health care system. J. Thorac. Oncol. 8, 1136-1141 (2013).
-
(2013)
J. Thorac. Oncol.
, vol.8
, pp. 1136-1141
-
-
Ellis, P.M.1
Verma, S.2
Sehdev, S.3
Younus, J.4
Leighl, N.B.5
-
42
-
-
84911866971
-
Molecular testing for selection of patients with lung cancer for epidermal growth factor receptor and anaplastic lymphoma kinase tyrosine kinase inhibitors: American Society of Clinical Oncology endorsement of the College of American Pathologists/International Association for the study of lung cancer/association for molecular pathology guideline
-
Leighl, N.B. et al. Molecular testing for selection of patients with lung cancer for epidermal growth factor receptor and anaplastic lymphoma kinase tyrosine kinase inhibitors: American Society of Clinical Oncology endorsement of the College of American Pathologists/International Association for the study of lung cancer/association for molecular pathology guideline. J. Clin. Oncol. 32, 3673-3679 (2014).
-
(2014)
J. Clin. Oncol.
, vol.32
, pp. 3673-3679
-
-
Leighl, N.B.1
-
43
-
-
84946737759
-
Biomarker testing and time to treatment decision in patients with advanced nonsmall-cell lung cancer
-
Lim, C. et al. Biomarker testing and time to treatment decision in patients with advanced nonsmall-cell lung cancer. Ann. Oncol. 26, 1415-1421 (2015).
-
(2015)
Ann. Oncol.
, vol.26
, pp. 1415-1421
-
-
Lim, C.1
-
44
-
-
84902546788
-
Sample features associated with success rates in population-based EGFR mutation testing
-
Shiau, C.J. et al. Sample features associated with success rates in population-based EGFR mutation testing. J. Thorac. Oncol. 9, 947-956 (2014).
-
(2014)
J. Thorac. Oncol.
, vol.9
, pp. 947-956
-
-
Shiau, C.J.1
-
45
-
-
84931571793
-
EGFR mutation testing practices within the Asia Pacific region: Results of a multicenter diagnostic survey
-
Yatabe, Y. et al. EGFR mutation testing practices within the Asia Pacific region: results of a multicenter diagnostic survey. J. Thorac. Oncol. 10, 438-445 (2015).
-
(2015)
J. Thorac. Oncol.
, vol.10
, pp. 438-445
-
-
Yatabe, Y.1
-
46
-
-
81255175501
-
High-throughput droplet digital PCR system for absolute quantitation of DNA copy number
-
Hindson, B.J. et al. High-throughput droplet digital PCR system for absolute quantitation of DNA copy number. Anal. Chem. 83, 8604-8610 (2011).
-
(2011)
Anal. Chem.
, vol.83
, pp. 8604-8610
-
-
Hindson, B.J.1
-
47
-
-
84946040120
-
COSMIC: Exploring the world's knowledge of somatic mutations in human cancer
-
Forbes, S.A. et al. COSMIC: exploring the world's knowledge of somatic mutations in human cancer. Nucleic Acids Res. 43, D805-D811 (2015).
-
(2015)
Nucleic Acids Res.
, vol.43
, pp. D805-D811
-
-
Forbes, S.A.1
-
48
-
-
78651079558
-
A platform for rapid detection of multiple oncogenic mutations with relevance to targeted therapy in non-small-cell lung cancer
-
Su, Z. et al. A platform for rapid detection of multiple oncogenic mutations with relevance to targeted therapy in non-small-cell lung cancer. J. Mol. Diagn. 13, 74-84 (2011).
-
(2011)
J. Mol. Diagn.
, vol.13
, pp. 74-84
-
-
Su, Z.1
-
49
-
-
0026821975
-
Zero-inflated poisson regression, with an application to defects in manufacturing
-
Lambert, D. Zero-inflated poisson regression, with an application to defects in manufacturing. Technometrics 34, 1-14 (1992).
-
(1992)
Technometrics
, vol.34
, pp. 1-14
-
-
Lambert, D.1
|