메뉴 건너뛰기




Volumn 9, Issue 11, 2014, Pages 2586-2606

Erratum: Detecting ultralow-frequency mutations by Duplex Sequencing (Nature Protocols (2014) 9 (2586-2606) DOI:10.1038/nprot.2014.170);Detecting ultralow-frequency mutations by Duplex Sequencing

Author keywords

[No Author keywords available]

Indexed keywords

DNA POLYMERASE; DOUBLE STRANDED DNA; MITOCHONDRIAL DNA;

EID: 84908181086     PISSN: 17542189     EISSN: 17502799     Source Type: Journal    
DOI: 10.1038/nprot1214-2903d     Document Type: Erratum
Times cited : (329)

References (40)
  • 1
    • 80051688000 scopus 로고    scopus 로고
    • Field guide to next-generation DNA sequencers
    • Glenn, T.C. Field guide to next-generation DNA sequencers. Mol. Ecol. Resour. 11, 759-769 (2011).
    • (2011) Mol. Ecol. Resour. , vol.11 , pp. 759-769
    • Glenn, T.C.1
  • 2
    • 0016176530 scopus 로고
    • Errors in DNA replication as a basis of malignant change
    • Loeb, L.A., Springgate, C.F. & Battula, N. Errors in DNA replication as a basis of malignant change. Cancer Res. 34, 2311-2321 (1974).
    • (1974) Cancer Res. , vol.34 , pp. 2311-2321
    • Loeb, L.A.1    Springgate, C.F.2    Battula, N.3
  • 3
    • 84863393080 scopus 로고    scopus 로고
    • Intratumor heterogeneity and branched evolution revealed by multiregion sequencing
    • Gerlinger, M. et al. Intratumor heterogeneity and branched evolution revealed by multiregion sequencing. N. Engl. J. Med. 366, 883-892 (2012).
    • (2012) N. Engl. J. Med. , vol.366 , pp. 883-892
    • Gerlinger, M.1
  • 4
    • 79953766940 scopus 로고    scopus 로고
    • Tumour evolution inferred by single-cell sequencing
    • Navin, N. et al. Tumour evolution inferred by single-cell sequencing. Nature 472, 90-94 (2011).
    • (2011) Nature , vol.472 , pp. 90-94
    • Navin, N.1
  • 5
    • 84892699941 scopus 로고    scopus 로고
    • Heterogeneity of genomic evolution and mutational profiles in multiple myeloma
    • Bolli, N. et al. Heterogeneity of genomic evolution and mutational profiles in multiple myeloma. Nat. Commun. 5, 2997 (2014).
    • (2014) Nat. Commun. , vol.5 , pp. 2997
    • Bolli, N.1
  • 6
    • 84880507665 scopus 로고    scopus 로고
    • Mutational heterogeneity in cancer and the search for new cancer-associated genes
    • Lawrence, M.S. et al. Mutational heterogeneity in cancer and the search for new cancer-associated genes. Nature 499, 214-218 (2013).
    • (2013) Nature , vol.499 , pp. 214-218
    • Lawrence, M.S.1
  • 7
    • 84873084388 scopus 로고    scopus 로고
    • Variable clonal repopulation dynamics influence chemotherapy response in colorectal cancer
    • Kreso, A. et al. Variable clonal repopulation dynamics influence chemotherapy response in colorectal cancer. Science 339, 543-548 (2013).
    • (2013) Science , vol.339 , pp. 543-548
    • Kreso, A.1
  • 8
    • 84892373020 scopus 로고    scopus 로고
    • Mutational analysis reveals the origin and therapy-driven evolution of recurrent glioma
    • Johnson, B.E. et al. Mutational analysis reveals the origin and therapy-driven evolution of recurrent glioma. Science 343, 189-193 (2014).
    • (2014) Science , vol.343 , pp. 189-193
    • Johnson, B.E.1
  • 9
    • 84865998520 scopus 로고    scopus 로고
    • Implications of genetic heterogeneity in cancer
    • Schmitt, M.W., Prindle, M.J. & Loeb, L.A. Implications of genetic heterogeneity in cancer. Ann. NY Acad. Sci. 1267, 110-116 (2012).
    • (2012) Ann. NY Acad. Sci. , vol.1267 , pp. 110-116
    • Schmitt, M.W.1    Prindle, M.J.2    Loeb, L.A.3
  • 10
    • 20044368434 scopus 로고    scopus 로고
    • Patterns of diversifying selection in the phytotoxin-like scr74 gene family of Phytophthora infestans
    • Liu, Z. et al. Patterns of diversifying selection in the phytotoxin-like scr74 gene family of Phytophthora infestans. Mol. Biol. Evol. 22, 659-672 (2005).
    • (2005) Mol. Biol. Evol. , vol.22 , pp. 659-672
    • Liu, Z.1
  • 11
    • 50849126804 scopus 로고    scopus 로고
    • High-precision whole-genome sequencing of laboratory strains facilitates genetic studies
    • Srivatsan, A. et al. High-precision, whole-genome sequencing of laboratory strains facilitates genetic studies. PLoS Genet. 4, e1000139 (2008).
    • (2008) PLoS Genet. , vol.4 , pp. e1000139
    • Srivatsan, A.1
  • 12
    • 48349124258 scopus 로고    scopus 로고
    • High-throughput sequencing provides insights into genome variation and evolution in Salmonella typhi
    • Holt, K.E. et al. High-throughput sequencing provides insights into genome variation and evolution in Salmonella typhi. Nat. Genet. 40, 987-993 (2008).
    • (2008) Nat. Genet. , vol.40 , pp. 987-993
    • Holt, K.E.1
  • 13
    • 75749154085 scopus 로고    scopus 로고
    • Optimization of DNA polymerase mutation rates during bacterial evolution
    • Loh, E., Salk, J.J. & Loeb, L.A. Optimization of DNA polymerase mutation rates during bacterial evolution. Proc. Natl. Acad. Sci. USA 107, 1154-1159, 2010).
    • (2010) Proc. Natl. Acad. Sci. USA , vol.107 , pp. 1154-1159
    • Loh, E.1    Salk, J.J.2    Loeb, L.A.3
  • 14
    • 70249117523 scopus 로고    scopus 로고
    • Extracting evidence from forensic DNA analyses: Future molecular biology directions
    • Budowle, B. & van Daal, A. Extracting evidence from forensic DNA analyses: future molecular biology directions. Biotechniques 46, 339-340, 342-350 (2009).
    • (2009) Biotechniques , vol.46 , Issue.339-340 , pp. 342-350
    • Budowle, B.1    Van Daal, A.2
  • 15
    • 0035581087 scopus 로고    scopus 로고
    • DNA sequences from multiple amplifications reveal artifacts induced by cytosine deamination in ancient DNA
    • Hofreiter, M., Jaenicke, V., Serre, D., von Haeseler, A. & Paabo, S. DNA sequences from multiple amplifications reveal artifacts induced by cytosine deamination in ancient DNA. Nucleic Acids Res. 29, 4793-4799 (2001).
    • (2001) Nucleic Acids Res. , vol.29 , pp. 4793-4799
    • Hofreiter, M.1    Jaenicke, V.2    Serre, D.3    Von Haeseler, A.4    Paabo, S.5
  • 16
    • 79952098463 scopus 로고    scopus 로고
    • Next-generation sequencing of ancient DNA: Requirements, strategies and perspectives
    • Knapp, M. & Hofreiter, M. Next-generation sequencing of ancient DNA: requirements, strategies and perspectives. Genes 1, 227-243 (2010).
    • (2010) Genes , vol.1 , pp. 227-243
    • Knapp, M.1    Hofreiter, M.2
  • 17
    • 84856411877 scopus 로고    scopus 로고
    • Decoding cell lineage from acquired mutations using arbitrary deep sequencing
    • Carlson, C.A. et al. Decoding cell lineage from acquired mutations using, arbitrary deep sequencing. Nat. Methods 9, 78-80 (2012).
    • (2012) Nat. Methods , vol.9 , pp. 78-80
    • Carlson, C.A.1
  • 18
    • 84867288246 scopus 로고    scopus 로고
    • A high-throughput next-generation sequencing-based method for detecting the mutational fingerprint of carcinogens
    • Besaratinia, A. et al. A high-throughput next-generation sequencing-based method for detecting the mutational fingerprint of carcinogens. Nucleic Acids Res. 40, e116 (2012).
    • (2012) Nucleic Acids Res. , vol.40 , pp. e116
    • Besaratinia, A.1
  • 19
    • 84865979581 scopus 로고    scopus 로고
    • Detection of ultra-rare mutations by next-generation sequencing
    • Schmitt, M.W. et al. Detection of ultra-rare mutations by next-generation sequencing. Proc Natl. Acad. Sci. USA 109, 14508-14513 (2012).
    • (2012) Proc Natl. Acad. Sci. USA , vol.109 , pp. 14508-14513
    • Schmitt, M.W.1
  • 21
    • 77449144323 scopus 로고    scopus 로고
    • Parallel, tag-directed assembly of locally derived short sequence reads
    • Hiatt, J.B., Patwardhan, R.P., Turner, E.H., Lee, C. & Shendure, J. Parallel, tag-directed assembly of locally derived short sequence reads. Nat. Methods 7, 119-122 (2010).
    • (2010) Nat. Methods , vol.7 , pp. 119-122
    • Hiatt, J.B.1    Patwardhan, R.P.2    Turner, E.H.3    Lee, C.4    Shendure, J.5
  • 23
  • 24
    • 84856484968 scopus 로고    scopus 로고
    • Counting absolute numbers of molecules using unique molecular identifiers
    • Kivioja, T. et al. Counting absolute numbers of molecules using unique molecular identifiers. Nat. Methods 9, 72-74 (2012).
    • (2012) Nat. Methods , vol.9 , pp. 72-74
    • Kivioja, T.1
  • 25
    • 79960226263 scopus 로고    scopus 로고
    • A method for counting PCR template molecules with application to next-generation sequencing
    • Casbon, J.A., Osborne, R.J., Brenner, S. & Lichtenstein, C.P. A method for counting PCR template molecules with application to next-generation sequencing. Nucleic Acids Res. 39, e81 (2011).
    • (2011) Nucleic Acids Res. , vol.39 , pp. e81
    • Casbon, J.A.1    Osborne, R.J.2    Brenner, S.3    Lichtenstein, C.P.4
  • 26
    • 84856398949 scopus 로고    scopus 로고
    • Digital RNA sequencing minimizes sequence-dependent bias and amplification noise with optimized single-molecule barcodes
    • Shiroguchi, K., Jia, T.Z., Sims, P.A. & Xie, X.S. Digital RNA sequencing minimizes sequence-dependent bias and amplification noise with optimized single-molecule barcodes. Proc. Natl. Acad. Sci. USA 109, 1347-1352 (2012).
    • (2012) Proc. Natl. Acad. Sci. USA , vol.109 , pp. 1347-1352
    • Shiroguchi, K.1    Jia, T.Z.2    Sims, P.A.3    Xie, X.S.4
  • 27
    • 84871461434 scopus 로고    scopus 로고
    • Genome-wide detection of single-nucleotide and copy-number variations of a single human cell
    • Zong, C., Lu, S., Chapman, A.R. & Xie, X.S. Genome-wide detection of single-nucleotide and copy-number variations of a single human cell. Science 338, 1622-1626 (2012).
    • (2012) Science , vol.338 , pp. 1622-1626
    • Zong, C.1    Lu, S.2    Chapman, A.R.3    Xie, X.S.4
  • 28
    • 84864258558 scopus 로고    scopus 로고
    • Genome-wide single-cell analysis of recombination activity and de novo mutation rates in human sperm
    • Wang, J., Fan, H.C., Behr, B. & Quake, S.R. Genome-wide single-cell analysis of recombination activity and de novo mutation rates in human sperm. Cell 150, 402-412 (2012).
    • (2012) Cell , vol.150 , pp. 402-412
    • Wang, J.1    Fan, H.C.2    Behr, B.3    Quake, S.R.4
  • 29
    • 84906238686 scopus 로고    scopus 로고
    • Clonal evolution in breast cancer revealed by singlenucleus genome sequencing
    • Wang, Y. et al. Clonal evolution in breast cancer revealed by singlenucleus genome sequencing. Nature 512, 155-160 (2014).
    • (2014) Nature , vol.512 , pp. 155-160
    • Wang, Y.1
  • 30
    • 84889677831 scopus 로고    scopus 로고
    • Mutational and fitness landscapes of an RNA virus revealed through population sequencing
    • Acevedo, A., Brodsky, L. & Andino, R. Mutational and fitness landscapes of an RNA virus revealed through population sequencing. Nature 505, 686-690 (2014).
    • (2014) Nature , vol.505 , pp. 686-690
    • Acevedo, A.1    Brodsky, L.2    Andino, R.3
  • 31
    • 84889659729 scopus 로고    scopus 로고
    • High-throughput DNA sequencing errors are reduced by orders of magnitude using circle sequencing
    • Lou, D.I. et al. High-throughput DNA sequencing errors are reduced by orders of magnitude using circle sequencing. Proc. Natl. Acad. Sci. USA 110, 19872-19877 (2013).
    • (2013) Proc. Natl. Acad. Sci. USA , vol.110 , pp. 19872-19877
    • Lou, D.I.1
  • 32
    • 84861338305 scopus 로고    scopus 로고
    • An optimized protocol for forensic application of the PreCR repair mix to multiplex STR amplification of UV-damaged DNA
    • Diegoli, T.M., Farr, M., Cromartie, C., Coble, M.D. & Bille, T.W. An optimized protocol for forensic application of the PreCR repair mix to multiplex STR amplification of UV-damaged DNA. Forensic Sci. Int. Genet. 6, 498-503 (2012).
    • (2012) Forensic Sci. Int. Genet. , vol.6 , pp. 498-503
    • Diegoli, T.M.1    Farr, M.2    Cromartie, C.3    Coble, M.D.4    Bille, T.W.5
  • 33
    • 84884686924 scopus 로고    scopus 로고
    • Ultra-sensitive sequencing reveals an age-related increase in somatic mitochondrial mutations that are inconsistent with oxidative damage
    • Kennedy, S.R., Salk, J.J., Schmitt, M.W. & Loeb, L.A. Ultra-sensitive sequencing reveals an age-related increase in somatic mitochondrial mutations that are inconsistent with oxidative damage. PLoS Genet. 9 e1003794 2013).
    • (2013) PLoS Genet. , vol.9 , pp. e1003794
    • Kennedy, S.R.1    Salk, J.J.2    Schmitt, M.W.3    Loeb, L.A.4
  • 34
    • 84864917026 scopus 로고    scopus 로고
    • Identification of high-confidence somatic mutations in whole genome sequence of formalin-fixed breast cancer specimens
    • Yost, S.E. et al. Identification of high-confidence somatic mutations in whole genome sequence of formalin-fixed breast cancer specimens. Nucleic Acids Res. 40, e107 (2012).
    • (2012) Nucleic Acids Res. , vol.40 , pp. e107
    • Yost, S.E.1
  • 35
    • 80053173227 scopus 로고    scopus 로고
    • Targeted high throughput sequencing in clinical cancer settings: Formaldehyde fixed-paraffin embedded (FFPE) tumor tissues, input amount and tumor heterogeneity
    • Kerick, M. et al. Targeted high throughput sequencing in clinical cancer settings: formaldehyde fixed-paraffin embedded (FFPE) tumor tissues, input amount and tumor heterogeneity. BMC Med. Genomics 4, 68 (2011).
    • (2011) BMC Med. Genomics , vol.4 , pp. 68
    • Kerick, M.1
  • 36
    • 84882261506 scopus 로고    scopus 로고
    • Comparison of clinical targeted next-generation sequence data from formalin-fixed and fresh-frozen tissue specimens
    • Spencer, D.H. et al. Comparison of clinical targeted next-generation sequence data from formalin-fixed and fresh-frozen tissue specimens. J. Mol. Diagn. 15, 623-633 (2013).
    • (2013) J. Mol. Diagn. , vol.15 , pp. 623-633
    • Spencer, D.H.1
  • 37
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short-read alignment with Burrows-Wheeler transform
    • Li, H. & Durbin, R. Fast and accurate short-read alignment with Burrows-Wheeler transform. Bioinformatics 25, 1754-1760 (2009).
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 38
    • 68549104404 scopus 로고    scopus 로고
    • The sequence alignment/Map format and SAMtools
    • Li, H. et al. The Sequence Alignment/Map format and SAMtools. Bioinformatics 25, 2078-2079 (2009).
    • (2009) Bioinformatics , vol.25 , pp. 2078-2079
    • Li, H.1
  • 39
    • 77956295988 scopus 로고    scopus 로고
    • The genome analysis toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
    • McKenna, A. et al. The genome analysis toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. Genome Res. 20, 1297-1303, 2010).
    • (2010) Genome Res. , vol.20 , pp. 1297-1303
    • McKenna, A.1
  • 40
    • 79955483667 scopus 로고    scopus 로고
    • A framework for variation discovery and genotyping using next-generation DNA sequencing data
    • DePristo, M.A. et al. A framework for variation discovery and genotyping using next-generation DNA sequencing data. Nat. Genet. 43, 491-498 (2011).
    • (2011) Nat. Genet. , vol.43 , pp. 491-498
    • Depristo, M.A.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.