-
1
-
-
57749195712
-
RNA-Seq: A revolutionary tool for transcriptomics
-
Wang, Z., Gerstein, M. & Snyder, M. RNA-Seq: a revolutionary tool for transcriptomics. Nat Rev Genet 10, 57-63, doi: 10.1038/nrg2484 (2009).
-
(2009)
Nat Rev Genet
, vol.10
, pp. 57-63
-
-
Wang, Z.1
Gerstein, M.2
Snyder, M.3
-
2
-
-
46249106990
-
Mapping and quantifying mammalian transcriptomes by RNA-Seq
-
Mortazavi, A., Williams, B. A., McCue, K., Schaeffer, L. & Wold, B. Mapping and quantifying mammalian transcriptomes by RNA-Seq. Nat Methods 5, 621-628, doi: 10.1038/nmeth.1226 (2008).
-
(2008)
Nat Methods
, vol.5
, pp. 621-628
-
-
Mortazavi, A.1
Williams, B.A.2
McCue, K.3
Schaeffer, L.4
Wold, B.5
-
3
-
-
84878682420
-
The Genotype-Tissue Expression (GTEx) project
-
Consortium, G. T. The Genotype-Tissue Expression (GTEx) project. Nat Genet 45, 580-585, doi: 10.1038/ng.2653 (2013).
-
(2013)
Nat Genet
, vol.45
, pp. 580-585
-
-
Consortium, G.T.1
-
4
-
-
67349196123
-
A HUPO test sample study reveals common problems in mass spectrometry-based proteomics
-
Bell, A. W. et al. A HUPO test sample study reveals common problems in mass spectrometry-based proteomics. Nat Methods 6, 423-430, doi: 10.1038/nmeth.1333 (2009).
-
(2009)
Nat Methods
, vol.6
, pp. 423-430
-
-
Bell, A.W.1
-
5
-
-
0037435030
-
Mass spectrometry-based proteomics
-
Aebersold, R. & Mann, M. Mass spectrometry-based proteomics. Nature 422, 198-207, doi: 10.1038/nature01511 (2003).
-
(2003)
Nature
, vol.422
, pp. 198-207
-
-
Aebersold, R.1
Mann, M.2
-
6
-
-
0141920354
-
Comparing protein abundance and mRNA expression levels on a genomic scale
-
Greenbaum, D., Colangelo, C., Williams, K. & Gerstein, M. Comparing protein abundance and mRNA expression levels on a genomic scale. Genome Biol 4, 117, doi: 10.1186/gb-2003-4-9-117 (2003).
-
(2003)
Genome Biol
, vol.4
, pp. 117
-
-
Greenbaum, D.1
Colangelo, C.2
Williams, K.3
Gerstein, M.4
-
7
-
-
78650642557
-
Defining the transcriptome and proteome in three functionally different human cell lines
-
Lundberg, E. et al. Defining the transcriptome and proteome in three functionally different human cell lines. Mol Syst Biol 6, 450, doi: 10.1038/msb.2010.106 (2010).
-
(2010)
Mol Syst Biol
, vol.6
, pp. 450
-
-
Lundberg, E.1
-
8
-
-
84920269464
-
Proteomics. Tissue-based map of the human proteome
-
Uhlen, M. et al. Proteomics. Tissue-based map of the human proteome. Science 347, 1260419, doi: 10.1126/science.1260419 (2015).
-
(2015)
Science
, vol.347
-
-
Uhlen, M.1
-
9
-
-
84858439862
-
Insights into the regulation of protein abundance from proteomic and transcriptomic analyses
-
Vogel, C. & Marcotte, E. M. Insights into the regulation of protein abundance from proteomic and transcriptomic analyses. Nat Rev Genet 13, 227-232, doi: 10.1038/nrg3185 (2012).
-
(2012)
Nat Rev Genet
, vol.13
, pp. 227-232
-
-
Vogel, C.1
Marcotte, E.M.2
-
10
-
-
0033016717
-
Correlation between protein and mRNA abundance in yeast
-
Gygi, S. P., Rochon, Y., Franza, B. R. & Aebersold, R. Correlation between protein and mRNA abundance in yeast. Mol Cell Biol 19, 1720-1730 (1999).
-
(1999)
Mol Cell Biol
, vol.19
, pp. 1720-1730
-
-
Gygi, S.P.1
Rochon, Y.2
Franza, B.R.3
Aebersold, R.4
-
11
-
-
79956322553
-
Global quantification of mammalian gene expression control
-
Schwanhausser, B. et al. Global quantification of mammalian gene expression control. Nature 473, 337-342, doi: 10.1038/nature10098 (2011).
-
(2011)
Nature
, vol.473
, pp. 337-342
-
-
Schwanhausser, B.1
-
12
-
-
68949205722
-
Correlations between RNA and protein expression profiles in 23 human cell lines
-
Gry, M. et al. Correlations between RNA and protein expression profiles in 23 human cell lines. BMC Genomics 10, 365, doi: 10.1186/1471-2164-10-365 (2009).
-
(2009)
BMC Genomics
, vol.10
, pp. 365
-
-
Gry, M.1
-
13
-
-
0036549767
-
Discordant protein and mRNA expression in lung adenocarcinomas
-
Chen, G. et al. Discordant protein and mRNA expression in lung adenocarcinomas. Mol Cell Proteomics 1, 304-313 (2002).
-
(2002)
Mol Cell Proteomics
, vol.1
, pp. 304-313
-
-
Chen, G.1
-
14
-
-
84901599553
-
A draft map of the human proteome
-
Kim, M. S. et al. A draft map of the human proteome. Nature 509, 575-581, doi: 10.1038/nature13302 (2014).
-
(2014)
Nature
, vol.509
, pp. 575-581
-
-
Kim, M.S.1
-
15
-
-
84901611036
-
Mass-spectrometry-based draft of the human proteome
-
Wilhelm, M. et al. Mass-spectrometry-based draft of the human proteome. Nature 509, 582-587, doi: 10.1038/nature13319 (2014).
-
(2014)
Nature
, vol.509
, pp. 582-587
-
-
Wilhelm, M.1
-
16
-
-
84929015296
-
Human genomics. The human transcriptome across tissues and individuals
-
Mele, M. et al. Human genomics. The human transcriptome across tissues and individuals. Science 348, 660-665, doi: 10.1126/science.aaa0355 (2015).
-
(2015)
Science
, vol.348
, pp. 660-665
-
-
Mele, M.1
-
17
-
-
0037150676
-
Unique chromatin remodeling and transcriptional regulation in spermatogenesis
-
Sassone-Corsi, P. Unique chromatin remodeling and transcriptional regulation in spermatogenesis. Science 296, 2176-2178, doi: 10.1126/science.1070963 (2002).
-
(2002)
Science
, vol.296
, pp. 2176-2178
-
-
Sassone-Corsi, P.1
-
18
-
-
80055015161
-
Temporal dynamics and genetic control of transcription in the human prefrontal cortex
-
Colantuoni, C. et al. Temporal dynamics and genetic control of transcription in the human prefrontal cortex. Nature 478, 519-523, doi: 10.1038/nature10524 (2011).
-
(2011)
Nature
, vol.478
, pp. 519-523
-
-
Colantuoni, C.1
-
19
-
-
84856707623
-
Accurate quantification of cardiovascular biomarkers in serum using Protein Standard Absolute Quantification (PSAQ) and selected reaction monitoring
-
Huillet, C. et al. Accurate quantification of cardiovascular biomarkers in serum using Protein Standard Absolute Quantification (PSAQ) and selected reaction monitoring. Mol Cell Proteomics 11, M111 008235, doi: 10.1074/mcp.M111.008235 (2012).
-
(2012)
Mol Cell Proteomics
, vol.11
-
-
Huillet, C.1
-
20
-
-
84862305020
-
Identification of candidate biomarkers for early detection of human lung squamous cell cancer by quantitative proteomics
-
Zeng, G. Q. et al. Identification of candidate biomarkers for early detection of human lung squamous cell cancer by quantitative proteomics. Mol Cell Proteomics 11, M111 013946, doi: 10.1074/mcp.M111.013946 (2012).
-
(2012)
Mol Cell Proteomics
, vol.11
-
-
Zeng, G.Q.1
-
21
-
-
84891767304
-
DrugBank 4.0: Shedding new light on drug metabolism
-
Law, V. et al. DrugBank 4.0: shedding new light on drug metabolism. Nucleic Acids Res 42, D1091-1097, doi: 10.1093/nar/gkt1068 (2014).
-
(2014)
Nucleic Acids Res
, vol.42
, pp. D1091-D1097
-
-
Law, V.1
-
22
-
-
84887083535
-
TCPA: A resource for cancer functional proteomics data
-
Li, J. et al. TCPA: a resource for cancer functional proteomics data. Nat Methods 10, 1046-1047, doi: 10.1038/nmeth.2650 (2013).
-
(2013)
Nat Methods
, vol.10
, pp. 1046-1047
-
-
Li, J.1
-
23
-
-
32844472704
-
Y-box factor YB1 controls p53 apoptotic function
-
Homer, C. et al. Y-box factor YB1 controls p53 apoptotic function. Oncogene 24, 8314-8325, doi: 10.1038/sj.onc.1208998 (2005).
-
(2005)
Oncogene
, vol.24
, pp. 8314-8325
-
-
Homer, C.1
-
24
-
-
78650697735
-
Identification of Y-box binding protein 1 as a core regulator of MEK/ERK pathway-dependent gene signatures in colorectal cancer cells
-
Jurchott, K. et al. Identification of Y-box binding protein 1 as a core regulator of MEK/ERK pathway-dependent gene signatures in colorectal cancer cells. PLoS Genet 6, e1001231, doi: 10.1371/journal.pgen.1001231 (2010).
-
(2010)
PLoS Genet
, vol.6
-
-
Jurchott, K.1
-
25
-
-
84907198966
-
Knockdown of Yboxbinding protein1 inhibits the malignant progression of HT29 colorectal adenocarcinoma cells by reversing epithelialmesenchymal transition
-
Yan, X. B. et al. Knockdown of Yboxbinding protein1 inhibits the malignant progression of HT29 colorectal adenocarcinoma cells by reversing epithelialmesenchymal transition. Mol Med Rep 10, 2720-2728, doi: 10.3892/mmr.2014.2545 (2014).
-
(2014)
Mol Med Rep
, vol.10
, pp. 2720-2728
-
-
Yan, X.B.1
-
26
-
-
84856172050
-
YB-1, the E2F pathway, and regulation of tumor cell growth
-
Lasham, A. et al. YB-1, the E2F pathway, and regulation of tumor cell growth. J Natl Cancer Inst 104, 133-146, doi: 10.1093/jnci/djr512 (2012).
-
(2012)
J Natl Cancer Inst
, vol.104
, pp. 133-146
-
-
Lasham, A.1
-
27
-
-
84928975328
-
Endogenous tRNA-Derived Fragments Suppress Breast Cancer Progression via YBX1 Displacement
-
Goodarzi, H. et al. Endogenous tRNA-Derived Fragments Suppress Breast Cancer Progression via YBX1 Displacement. Cell 161, 790-802, doi: 10.1016/j.cell.2015.02.053 (2015).
-
(2015)
Cell
, vol.161
, pp. 790-802
-
-
Goodarzi, H.1
-
28
-
-
75849145292
-
Expansion of the eukaryotic proteome by alternative splicing
-
Nilsen, T. W. & Graveley, B. R. Expansion of the eukaryotic proteome by alternative splicing. Nature 463, 457-463, doi: 10.1038/nature08909 (2010).
-
(2010)
Nature
, vol.463
, pp. 457-463
-
-
Nilsen, T.W.1
Graveley, B.R.2
-
29
-
-
71049160053
-
Endogenous gene and protein expression of drug-transporting proteins in cell lines routinely used in drug discovery programs
-
Ahlin, G. et al. Endogenous gene and protein expression of drug-transporting proteins in cell lines routinely used in drug discovery programs. Drug Metab Dispos 37, 2275-2283, doi: 10.1124/dmd.109.028654 (2009).
-
(2009)
Drug Metab Dispos
, vol.37
, pp. 2275-2283
-
-
Ahlin, G.1
-
30
-
-
33745612095
-
Pvclust: An R package for assessing the uncertainty in hierarchical clustering
-
Suzuki, R. & Shimodaira, H. Pvclust: an R package for assessing the uncertainty in hierarchical clustering. Bioinformatics 22, 1540-1542, doi: 10.1093/bioinformatics/btl117 (2006).
-
(2006)
Bioinformatics
, vol.22
, pp. 1540-1542
-
-
Suzuki, R.1
Shimodaira, H.2
-
31
-
-
0038005018
-
DAVID: Database for Annotation, Visualization, and Integrated Discovery
-
Dennis, G. Jr. et al. DAVID: Database for Annotation, Visualization, and Integrated Discovery. Genome Biol 4, P3 (2003).
-
(2003)
Genome Biol
, vol.4
, pp. 3
-
-
Dennis, G.1
-
32
-
-
79960610118
-
REVIGO summarizes and visualizes long lists of gene ontology terms
-
Supek, F., Bosnjak, M., Skunca, N. & Smuc, T. REVIGO summarizes and visualizes long lists of gene ontology terms. Plos One 6, e21800, doi: 10.1371/journal.pone.0021800 (2011).
-
(2011)
Plos One
, vol.6
-
-
Supek, F.1
Bosnjak, M.2
Skunca, N.3
Smuc, T.4
|