Reconstitution of a secondary cell wall in a secondary cell wall-deficient arabidopsis mutant

Plant and Cell Physiology

Volumn 56, Issue 2, 2015, Pages 299-310

  Sakamoto, Shingo ^a   Mitsuda, Nobutaka ^a  

^a NATIONAL INSTITUTE OF ADVANCED INDUSTRIAL SCIENCE AND TECHNOLOGY AIST   (Japan)

Author keywords

Arabidopsis; Fiber cell; Secondary cell wall; Synthetic biology; Transcription factor

Indexed keywords

ARABIDOPSIS PROTEIN; LIGNIN; MONOSACCHARIDE; TRANSCRIPTION FACTOR;

ARABIDOPSIS; CARBOHYDRATE METABOLISM; CELL WALL; CYTOLOGY; GENE EXPRESSION REGULATION; GENE INACTIVATION; GENETICS; METABOLISM; MUTATION; PHENOTYPE; PLANT STEM;

ARABIDOPSIS; ARABIDOPSIS PROTEINS; CARBOHYDRATE METABOLISM; CELL WALL; GENE EXPRESSION REGULATION, PLANT; GENE KNOCKOUT TECHNIQUES; LIGNIN; MONOSACCHARIDES; MUTATION; PHENOTYPE; PLANT STEMS; TRANSCRIPTION FACTORS;

EID: 84965085706     PISSN: 00320781     EISSN: 14719053     Source Type: Journal    
DOI: 10.1093/pcp/pcu208     Document Type: Article

References (56)

1. Ajanovic, A. (2011) Biofuels versus food production: does biofuels production increase food prices?. Energy 36: 2070-2076.
2. Albersheim, P., Darvill, A., Roberts, K., Sederoff, R. and Staehelin, A. (2010) Plant Cell Walls. From Chemistry to Biology pp. 67-118. Garland Science, New York.
3. Brown, D.M., Goubet, F., Wong, V.W., Goodacre, R., Stephens, E., Dupree, P. et al. (2007) Comparison of five xylan synthesis mutants reveals new insight into the mechanisms of xylan synthesis. Plant J. 52: 1154-1168.
4. Chen, F. and Dixon, R.A. (2007) Lignin modification improves fermentable sugar yields for biofuel production. Nat. Biotechnol. 25: 759-761.
5. Clough, S.J. and Bent, A.F. (1998) Floral dip: A simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. Plant J. 16: 735-743.
6. Cook, C.M., Daudi, A., Millar, D.J., Bindschedler, L.V., Khan, S., Bolwell, G.P. et al. (2012) Transcriptional changes related to secondary wall formation in xylem of transgenic lines of tobacco altered for lignin or xylan content which show improved saccharification. Phytochemistry 74: 79-89.
7. Endo, H., Yamaguchi, M., Tamura, T., Nakano, Y., Nishikubo, N., Yoneda, A. et al. (2015) Multiple classes of transcription factors regulate the expression of VASCULAR-RELATED NAC-DOMAIN7, a master switch of xylem vessel differentiation. Plant Cell Physiol. 56: 242-254.
8. Eudes, A., George, A., Mukerjee, P., Kim, J.S., Pollet, B., Benke, P.I. et al. (2012) Biosynthesis and incorporation of side-chain-Truncated lignin monomers to reduce lignin polymerization and enhance saccharification. Plant Biotechnol. J. 10: 609-620.
9. Fu, C., Mielenz, J.R., Xiao, X., Ge, Y., Hamilton, C.Y., Rodriguez, M. et al. (2011) Genetic manipulation of lignin reduces recalcitrance and improves ethanol production from switchgrass. Proc. Natl Acad. Sci. USA 108: 3803-3808.
10. Fujiwara, S., Sakamoto, S., Kigoshi, K., Suzuki, K. and Ohme-Takagi, M. (2014) VP16 fusion induces the multiple-knockout phenotype of redundant transcriptional repressors partly by med25-independent mechanisms in Arabidopsis. FEBS Lett. 588: 3665-3672.
11. Hahn-Hagerdal, B., Galbe, M., Gorwa-Grauslund, M.F., Liden, G. and Zacchi, G. (2006) Bio-ethanol-The fuel of tomorrow from the residues of today. Trends Biotechnol. 24: 549-556.
12. Hirano, K., Kondo, M., Aya, K., Miyao, A., Sato, Y., Antonio, B.A. et al. (2013) Identification of transcription factors involved in rice secondary cell wall formation. Plant Cell Physiol. 54: 1791-1802.
13. Hiratsu, K., Ohta, M., Matsui, K. and Ohme-Takagi, M. (2002) The SUPERMAN protein is an active repressor whose carboxy-Terminal repression domain is required for the development of normal flowers. FEBS Lett. 514: 351-254.
14. Huang, J., Gu, M., Lai, Z., Fan, B., Shi, K., Zhou, Y.H. et al. (2010) Functional analysis of the Arabidopsis PAL gene family in plant growth, development, and response to environmental stress. Plant Physiol. 153: 1526-1538.
15. Iwase, A., Hideno, A., Watanabe, K., Mitsuda, N. and Ohme-Takagi, M. (2009) A chimeric NST repressor has the potential to improve glucose productivity from plant cell walls. J. Biotechnol. 142: 279-84.
16. Johansson, B., Christensson, C., Hobley, T. and Hahn-Hagerdal, B. (2001) Xylulokinase overexpression in two strains of Saccharomyces cerevisiae also expressing xylose reductase and xylitol dehydrogenase and its effect on fermentation of xylose and lignocellulosic hydrolysate. Appl. Environ. Microbiol. 67: 4249-4255.
17. Kim, S. and Dale, B.E. (2004) Global potential bioethanol production from wasted crops. Biomass Bioenergy 26: 361-375.
18. Kim, W.C., Kim, J.Y., Ko, J.H., Kang, H. and Han, K.H. (2014a) Identification of direct targets of transcription factor MYB46 provides insights into the transcriptional regulation of secondary wall biosynthesis. Plant Mol. Biol. 85: 589-599.
19. Kim, W.C., Reca, I.B., Kim, Y., Park, S., Thomashow, M.F., Keegstra, K. et al. (2014b) Transcription factors that directly regulate the expression of CSLA9 encoding mannan synthase in Arabidopsis thaliana. Plant Mol. Biol. 84: 577-587.
20. Ko, J.H., Kim, W.C. and Han, K.H. (2009) Ectopic expression of MYB46 identifies transcriptional regulatory genes involved in secondary wall biosynthesis in Arabidopsis. Plant J. 60: 649-665.
21. Kubo, M., Udagawa, M., Nishikubo, N., Horiguchi, G., Yamaguchi, M., Ito, J. et al. (2005) Transcription switches for protoxylem and metaxylem vessel formation. Genes Dev. 19: 1855-1860.
22. Kumagai, Y., Usuki, H., Yamamoto, Y., Yamasato, A., Mukaihara, T. and Hatanaka, T. (2012) Preparation of hemicellulolic oligosaccharides from chamaecyparis obtuse (hinoki) slurry using commercial enzymes. Front. Chem. Sci. Eng. 6: 224-231.
23. Kuroyama, H., Tsutsui, N., Hashimoto, Y. and Tsumuraya, Y. (2001) Purification and characterization of a beta-glucuronidase from Aspergillus niger. Carbohydr. Res. 333: 27-39.
24. Lao, N.T., Long, D., Kiang, S., Coupland, G., Shoue, D.A., Carpita, N.C. et al. (2003) Mutation of a family 8 glycosyltransferase gene alters cell wall carbohydrate composition and causes a humidity-sensitive semi-sterile dwarf phenotype in Arabidopsis. Plant Mol. Biol. 53: 647-661.
25. Lee, C., Teng, Q., Huang, W., Zhong, R. and Ye, Z.H. (2009) Down-regulation of poGT47C expression in poplar results in a reduced glucuronoxylan content and an increased wood digestibility by cellulase. Plant Cell Physiol. 50: 1075-1089.
26. Lee, C., Teng, Q., Zhong, R., Yuan, Y., Haghighat, M. and Ye, Z.H. (2012) Three Arabidopsis DUF579 domain-containing GXM proteins are methyltransferases catalyzing 4-O-methylation of glucuronic acid on xylan. Plant Cell Physiol. 53: 1934-1949.
27. Mansfield, S.D., Kang, K.Y. and Chapple, C. (2012) Designed for deconstruction-poplar trees altered in cell wall lignification improve the efficacy of bioethanol production. New Phytol. 194: 91-101.
28. McCarthy, R.L., Zhong, R. and Ye, Z.H. (2009) MYB83 is a direct target of SND1 and acts redundantly with MYB46 in the regulation of secondary cell wall biosynthesis in Arabidopsis. Plant Cell Physiol. 50: 1950-1964.
29. Mitsuda, N., Hiratsu, K., Todaka, D., Nakashima, K., Yamaguchi-Shinozaki, K. and Ohme-Takagi, M. (2006) Efficient production of male and female sterile plants by expression of a chimeric repressor in Arabidopsis and rice. Plant Biotechnol. J. 4: 325-332.
30. Mitsuda, N., Ikeda, M., Takada, S., Takiguchi, Y., Kondou, Y., Yoshizumi, T. et al. (2010) Efficient yeast one-/two-hybrid screening using a library composed only of transcription factors in Arabidopsis thaliana. Plant Cell Physiol. 51: 2145-2151.
31. Mitsuda, N., Iwase, A., Yamamoto, H., Yoshida, M., Seki, M., Shinozaki, K. et al. (2007) NAC transcription factors, NST1 and NST3, are key regulators of the formation of secondary walls in woody tissues of Arabidopsis. Plant Cell 19: 270-280.
32. Mitsuda, N. and Ohme-Takagi, M. (2009) Functional analysis of transcription factors in Arabidopsis. Plant Cell Physiol. 50: 1232-1248.
33. Mitsuda, N., Seki, M., Shinozaki, K. and Ohme-Takagi, M. (2005) The NAC transcription factors NST1 and NST2 of Arabidopsis regulate secondary wall thickenings and are required for anther dehiscence. Plant Cell 17: 2993-3006.
34. Nakamura, K., Tsumuraya, Y., Hashimoto, Y. and Yamamoto, S. (1984) Arabinogalactan-proteins reacting with eel anti-H agglutinin from leaves of cruciferous plants. Agric. Biol. Chem. 48: 753-760.
35. Ohta, M., Ohme-Takagi, M. and Shinshi, H. (2000) Three ethylene-responsive transcription factors in tobacco with distinct transactivation functions. Plant J. 22: 29-38.
36. Pena, M.J., Zhong, R., Zhou, G.K., Richardson, E.A., O'Neill, M.A., Darvill, A.G. et al. (2007) Arabidopsis irregular xylem8 and irregular xylem9: implications for the complexity of glucuronoxylan biosynthesis. Plant Cell 19: 549-563.
37. Persson, S., Caffall, K.H., Freshour, G., Hilley, M.T., Bauer, S., Poindexter, P. et al. (2007) The Arabidopsis irregular xylem8 mutant is deficient in glucuronoxylan and homogalacturonan, which are essential for secondary cell wall integrity. Plant Cell 19: 237-255.
38. Petersen, P.D., Lau, J., Ebert, B., Yang, F., Verhertbruggen, Y., Kim, J.S. et al. (2012) Engineering of plants with improved properties as biofuels feedstocks by vessel-specific complementation of xylan biosynthesis mutants. Biotechnol. Biofuels 5: 84.
39. Quentin, M., Allasia, V., Pegard, A., Allais, F., Ducrot, P.H., Favery, B. et al. (2009) Imbalanced lignin biosynthesis promotes the sexual reproduction of homothallic oomycete pathogens. PLoS Pathog. 5: e1000264.
40. Sakurai, N., Nishitani, K. and Masuda, Y. (1979) Auxin-induced changes in the molecular weight of hemicellulosic polysaccharides of the avena coleoptile cell wall. Plant Cell Physiol. 20: 1349-1357.
41. Schmid, M., Davison, T.S., Henz, S.R., Pape, U.J., Demar, M., Vingron, M. et al. (2005) A gene expression map of Arabidopsis thaliana development. Nat. Genet. 37: 501-506.
42. Sluiter, A., Hames, B., Ruiz, R., Scarlata, C., Sluiter, J. and Templeton, D. (2008) Determination of Sugars, Byproducts, and Degradation Products in Liquid Fraction Process Samples National Renewable Energy Laboratory, Golden, CO.
43. Sonderegger, M., Jeppsson, M., Larsson, C., Gorwa-Grauslund, M.F., Boles, E., Olsson, L. et al. (2004) Fermentation performance of engineered and evolved xylose-fermenting Saccharomyces cerevisiae strains. Biotechnol. Bioeng. 87: 90-98.
44. Soyano, T., Thitamadee, S., Machida, Y. and Chua, N.H. (2008) ASYMMETRIC LEAVES2-LIKE19/LATERAL ORGAN BOUNDARIES DOMAIN30 and ASL20/LBD18 regulate tracheary element differentiation in Arabidopsis. Plant Cell 20: 3359-3373.
45. Urbanowicz, B.R., Pena, M.J., Ratnaparkhe, S., Avci, U., Backe, J., Steet, H.F. et al. (2012) 4-O-methylation of glucuronic acid in Arabidopsis glucuronoxylan is catalyzed by a domain of unknown function family 579 protein. Proc. Natl Acad. Sci. USA 109: 14253-14258.
46. Van Acker, R., Vanholme, R., Storme, V., Mortimer, J.C., Dupree, P. and Boerjan, W. (2013) Lignin biosynthesis perturbations affect secondary cell wall composition and saccharification yield in Arabidopsis thaliana. Biotechnol. Biofuels. 6: 46.
47. Xu, B., Escamilla-Trevino, L.L., Sathitsuksanoh, N., Shen, Z., Shen, H., Zhang, Y.H. et al. (2011) Silencing of 4-coumarate:coenzyme A ligase in switchgrass leads to reduced lignin content and improved fermentable sugar yields for biofuel production. New Phytol. 192: 611-625.
48. Xu, B., Ohtani, M., Yamaguchi, M., Toyooka, K., Wakazaki, M., Sato, M. et al. (2014) Contribution of NAC transcription factors to plant adaptation to land. Science 343: 1505-1508.
49. Yamaguchi, M., Mitsuda, N., Ohtani, M., Ohme-Takagi, M., Kato, K. and Demura, T. (2011) VASCULAR-RELATED NAC-DOMAIN7 directly regulates the expression of a broad range of genes for xylem vessel formation. Plant J. 66: 579-590.
50. Yang, F., Mitra, P., Zhang, L., Prak, L., Verhertbruggen, Y., Kim, J.S. et al. (2013) Engineering secondary cell wall deposition in plants. Plant Biotechnol. J. 11: 325-335.
51. York, W.S., Darvill, A.G., McNeil, M., Stevenson, T.T. and Albersheim, P. (1986) Isolation and characterization of plant cell walls and cell wall components. Methods Enzymol. 118: 3-40.
52. Zhang, K., Bhuiya, M.W., Pazo, J.R., Miao, Y., Kim, H., Ralph, J. et al. (2012) An engineered monolignol 4-O-methyltransferase depresses lignin biosynthesis and confers novel metabolic capability in Arabidopsis. Plant Cell 24: 3135-3152.
53. Zhong, R., Demura, T. and Ye, Z.H. (2006) SND1, a NAC domain transcription factor, is a key regulator of secondary wall synthesis in fibers of Arabidopsis. Plant Cell 18: 3158-3170.
54. Zhong, R., Lee, C., Zhou, J., McCarthy, R.L. and Ye, Z.H. (2008) A battery of transcription factors involved in the regulation of secondary cell wall biosynthesis in Arabidopsis. Plant Cell 20: 2763-2782.
55. Zhong, R., Richardson, E.A. and Ye, Z.H. (2007) The MYB46 transcription factor is a direct target of SND1 and regulates secondary wall biosynthesis in Arabidopsis. Plant Cell 19: 2776-2792.
56. Zhou, J., Lee, C., Zhong, R. and Ye, Z.H. (2009) MYB58 and MYB63 are transcriptional activators of the lignin biosynthetic pathway during secondary cell wall formation in Arabidopsis. Plant Cell 21: 248-266.