-
1
-
-
84856090651
-
-
Recommendations of the National Institute of Standards and Technology, Special Publication
-
Mell P, Grance T. The NIST definition of cloud computing. Recommendations of the National Institute of Standards and Technology, Special Publication, 800–145 http://csrc. nist.gov/publications/PubsSPs.html
-
The NIST Definition of Cloud Computing
, pp. 800-145
-
-
Mell, P.1
Grance, T.2
-
5
-
-
78650153693
-
Protein-to-protein interactions: Technologies, databases, and algorithms
-
Cannataro M, Guzzi PH, Veltri P (2010) Protein-to-protein interactions: technologies, databases, and algorithms. ACM Comput Surv 43 (1):1–36
-
(2010)
ACM Comput Surv
, vol.43
, Issue.1
, pp. 1-36
-
-
Cannataro, M.1
Guzzi, P.H.2
Veltri, P.3
-
6
-
-
73449110582
-
SNP databases
-
Komar AA, Humana, Totowa, NJ, ch. 3
-
Phillips C (2009) SNP databases. In: Komar AA (ed) Single nucleotide polymorphisms, vol 578. Humana, Totowa, NJ, pp 43–71, ch. 3
-
(2009)
Single Nucleotide Polymorphisms
, vol.578
, pp. 43-71
-
-
Phillips, C.1
-
7
-
-
79951813794
-
Cloud and heterogeneous computing solutions exist today for the emerging big data problems in biology
-
Schadt EE, Linderman MD, Sorenson J et al (2011) Cloud and heterogeneous computing solutions exist today for the emerging big data problems in biology. Nat Rev Genet 12(3):224
-
(2011)
Nat Rev Genet
, vol.12
, Issue.3
, pp. 224
-
-
Schadt, E.E.1
Linderman, M.D.2
Sorenson, J.3
-
8
-
-
84855915647
-
A vision for a biomedical cloud
-
Grossmann RL, White KP (2011) A vision for a biomedical cloud. J Intern Med 271(2): 122–130
-
(2011)
J Intern Med
, vol.271
, Issue.2
, pp. 122-130
-
-
Grossmann, R.L.1
White, K.P.2
-
9
-
-
78751680760
-
Translational bioinformatics in the cloud: An affordable alternative
-
Dudley JT, Pouliot Y, Chen JR et al (2010) Translational bioinformatics in the cloud: an affordable alternative. Genome Med 2:51
-
(2010)
Genome Med
, vol.2
, pp. 51
-
-
Dudley, J.T.1
Pouliot, Y.2
Chen, J.R.3
-
10
-
-
80052308152
-
Biomedical cloud computing with Amazon web services
-
Fusaro VA, Patil P, Gafni E et al (2011) Biomedical cloud computing with Amazon web services. PLoS Comput Biol 7(8):e1002147. doi:10.1371/journal.pcbi.1002147
-
(2011)
Plos Comput Biol
, vol.7
, Issue.8
-
-
Fusaro, V.A.1
Patil, P.2
Gafni, E.3
-
11
-
-
84870057823
-
Bioinformatics clouds for big data manipulation
-
Dai L, Gao X, Guo Y et al (2012) Bioinformatics clouds for big data manipulation. Biol Direct 7:43. doi:10.1186/1745-6150-7-43
-
(2012)
Biol Direct
, vol.7
, pp. 43
-
-
Dai, L.1
Gao, X.2
Guo, Y.3
-
12
-
-
84862943583
-
Gene set analysis in the cloud
-
Zhang L, Gu S, Wang B et al (2012) Gene set analysis in the cloud. Bioinformatics 28 (2):294–295
-
(2012)
Bioinformatics
, vol.28
, Issue.2
, pp. 294-295
-
-
Zhang, L.1
Gu, S.2
Wang, B.3
-
13
-
-
79954517240
-
ECEO: An efficient Cloud Epistasis cOmputing model in genome-wide association study
-
Wang Z, Wang Y, Tan KL et al (2011) eCEO: an efficient Cloud Epistasis cOmputing model in genome-wide association study. Bioinformatics 27(8):1045–1051
-
(2011)
Bioinformatics
, vol.27
, Issue.8
, pp. 1045-1051
-
-
Wang, Z.1
Wang, Y.2
Tan, K.L.3
-
14
-
-
84898639657
-
STORMSeq: An open-source, user-friendly pipeline for processing personal genomics data in the cloud
-
Karczewski KJ, Fernald GH, Martin AR et al (2014) STORMSeq: an open-source, user-friendly pipeline for processing personal genomics data in the cloud. PLoS One 9(1): e84860. doi:10.1371/journal.pone.0084860
-
(2014)
Plos One
, vol.9
, Issue.1
-
-
Karczewski, K.J.1
Fernald, G.H.2
Martin, A.R.3
-
15
-
-
65649120715
-
CloudBurst: Highly sensitive read mapping with MapReduce
-
Schatz MC (2009) CloudBurst: highly sensitive read mapping with MapReduce. Bioinformatics 25(11):1363–1369
-
(2009)
Bioinformatics
, vol.25
, Issue.11
, pp. 1363-1369
-
-
Schatz, M.C.1
-
16
-
-
79957895842
-
CloudAligner: A fast and full-featured MapReduce based tool for sequence mapping
-
Nguyen T, Shi W, Ruden D (2011) CloudAligner: a fast and full-featured MapReduce based tool for sequence mapping. BMC Res Notes 4:171. doi:10.1186/1756-0500-4-171
-
(2011)
BMC Res Notes
, vol.4
, pp. 171
-
-
Nguyen, T.1
Shi, W.2
Ruden, D.3
-
17
-
-
72849149423
-
Searching for SNPs with cloud computing
-
Langmead B, Schatz MC, Lin J et al (2009) Searching for SNPs with cloud computing. Genome Biol 10:R134. doi:10.1186/gb-2009-10-11-r134
-
(2009)
Genome Biol
, vol.10
, pp. R134
-
-
Langmead, B.1
Schatz, M.C.2
Lin, J.3
-
18
-
-
84865530942
-
VAT: A computational framework to functionally annotate variants in personal genomes within a cloud-computing environment
-
Habegger L, Balasubramanian S, Chen DZ et al (2012) VAT: a computational framework to functionally annotate variants in personal genomes within a cloud-computing environment. Bioinformatics 28(17):2267–2269
-
(2012)
Bioinformatics
, vol.28
, Issue.17
, pp. 2267-2269
-
-
Habegger, L.1
Balasubramanian, S.2
Chen, D.Z.3
-
19
-
-
84863289036
-
FX: An RNA-Seq analysis tool on the cloud
-
Hong D (2012) FX: an RNA-Seq analysis tool on the cloud. Bioinformatics 28(5):721–723
-
(2012)
Bioinformatics
, vol.28
, Issue.5
, pp. 721-723
-
-
Hong, D.1
-
20
-
-
77955343193
-
Cloud-scale RNA-sequencing differential expression analysis with Myrna
-
Langmead B, Hansen KD, Leek JT (2010) Cloud-scale RNA-sequencing differential expression analysis with Myrna. Genome Biol 11:R83. doi:10.1186/gb-2010-11-8-r83
-
(2010)
Genome Biol
, vol.11
, pp. R83
-
-
Langmead, B.1
Hansen, K.D.2
Leek, J.T.3
-
21
-
-
79955676390
-
PeakRanger: A cloud-enabled peak caller for ChIP-seq data
-
Feng X, Grossman R, Stein L (2011) PeakRanger: a cloud-enabled peak caller for ChIP-seq data. BMC Bioinformatics 12:139. doi:10. 1186/1471-2105-12-139
-
(2011)
BMC Bioinformatics
, vol.12
, pp. 139
-
-
Feng, X.1
Grossman, R.2
Stein, L.3
-
22
-
-
84893419172
-
ProteoCloud: A full-featured open source proteomics cloud computing pipeline
-
Muth T, Peters J, Blackburn J et al (2013) ProteoCloud: a full-featured open source proteomics cloud computing pipeline. J Proteomics 88:104–108
-
(2013)
J Proteomics
, vol.88
, pp. 104-108
-
-
Muth, T.1
Peters, J.2
Blackburn, J.3
-
23
-
-
84866519569
-
BioVLABMMIA: A cloud environment for microRNA and mRNA integrated analysis (MMIA) on Amazon EC2
-
Lee H, Yang Y, Chae H et al (2012) BioVLABMMIA: a cloud environment for microRNA and mRNA integrated analysis (MMIA) on Amazon EC2. IEEE Trans Nanobioscience 11 (3):266–272
-
(2012)
IEEE Trans Nanobioscience
, vol.11
, Issue.3
, pp. 266-272
-
-
Lee, H.1
Yang, Y.2
Chae, H.3
-
24
-
-
84928994404
-
BioVLAB-MMIA-NGS: MicroRNA-mRNA integrated analysis using high throughput sequencing data
-
Chae H, Rhee S, Nephew KP et al (2014) BioVLAB-MMIA-NGS: MicroRNA-mRNA integrated analysis using high throughput sequencing data. Bioinformatics 31:265–267. doi:10.1093/bioinformatics/btu614
-
(2014)
Bioinformatics
, vol.31
, pp. 265-267
-
-
Chae, H.1
Rhee, S.2
Nephew, K.P.3
-
26
-
-
80755125553
-
Harnessing cloud computing with Galaxy Cloud
-
Afgan E, Baker D, Coraor N et al (2011) Harnessing cloud computing with Galaxy Cloud. Nat Biotechnol 29(11):972–974
-
(2011)
Nat Biotechnol
, vol.29
, Issue.11
, pp. 972-974
-
-
Afgan, E.1
Baker, D.2
Coraor, N.3
-
27
-
-
84869862536
-
Cloud-Man as a platform for tool, data and analysis distribution
-
Afgan E, Chapman B, Taylor J (2012) Cloud-Man as a platform for tool, data and analysis distribution. BMC Bioinformatics 13:315. doi:10.1186/1471-2105-13-315
-
(2012)
BMC Bioinformatics
, vol.13
, pp. 315
-
-
Afgan, E.1
Chapman, B.2
Taylor, J.3
-
28
-
-
84861736018
-
Eoulsan: A cloud computing-based framework facilitating high throughput sequencing analyses
-
Jourdren L, Bernard M, Dillies MA et al (2012) Eoulsan: a cloud computing-based framework facilitating high throughput sequencing analyses. Bioinformatics 11(28):1542–1543
-
(2012)
Bioinformatics
, vol.11
, Issue.28
, pp. 1542-1543
-
-
Jourdren, L.1
Bernard, M.2
Dillies, M.A.3
-
29
-
-
84893702985
-
Bionimbus: A cloud for managing, analyzing and sharing large genomics datasets
-
Heath P, Greenway M, Powell R et al (2014) Bionimbus: a cloud for managing, analyzing and sharing large genomics datasets. Int J Med Inform 21(6):969–975. doi:10.1136/ amiajnl-2013-002155
-
(2014)
Int J Med Inform
, vol.21
, Issue.6
, pp. 969-975
-
-
Heath, P.1
Greenway, M.2
Powell, R.3
-
30
-
-
80052121849
-
CloVR: A virtual machine for automated and portable sequence analysis from the desktop using cloud computing
-
Angiuoli SV, Matalka M, Gussman A et al (2011) CloVR: a virtual machine for automated and portable sequence analysis from the desktop using cloud computing. BMC Bioinformatics 12:356. doi:10.1186/1471-2105-12-356
-
(2011)
BMC Bioinformatics
, vol.12
, pp. 356
-
-
Angiuoli, S.V.1
Matalka, M.2
Gussman, A.3
-
31
-
-
84858330364
-
Cloud BioLinux: Pre-configured and ondemand bioinformatics computing for the genomics community
-
Krampis K, Booth T, Chapman B et al (2012) Cloud BioLinux: pre-configured and ondemand bioinformatics computing for the genomics community. Bioinformatics 13:42. doi:10.1186/1471-2105-13-42
-
(2012)
Bioinformatics
, vol.13
, pp. 42
-
-
Krampis, K.1
Booth, T.2
Chapman, B.3
-
33
-
-
84965048720
-
-
Guidelines on security and privacy in public cloud computing. National Institute of Standards and Technology (NIST), U.S. Department of Commerce. Special Publication
-
Guidelines on security and privacy in public cloud computing. National Institute of Standards and Technology (NIST), U.S. Department of Commerce. Special Publication, 800–144. http://csrc.nist.gov/publications/ nistpubs/800-144/SP800-144.pdf
-
-
-
-
34
-
-
77956137294
-
Cryptographic Cloud Storage, Financial Cryptography and Data Security
-
Kamara S, Lauter K (2010) Cryptographic Cloud Storage, Financial Cryptography and Data Security, Lecture Notes in Computer Science Volume 6054, pp. 136–149. doi:10. 1007/978-3-642-14992-4_13
-
(2010)
Lecture Notes in Computer Science
, vol.6054
, pp. 136-149
-
-
Kamara, S.1
Lauter, K.2
-
35
-
-
84904352832
-
A review on the state-of-the-art privacy preserving approaches in the e-health clouds
-
Abbas A, Khan SU (2014) A review on the state-of-the-art privacy preserving approaches in the e-health clouds. IEEE J Biomed Health Inform 18(4):1431–1441
-
(2014)
IEEE J Biomed Health Inform
, vol.18
, Issue.4
, pp. 1431-1441
-
-
Abbas, A.1
Khan, S.U.2
|