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Volumn 44, Issue 3, 2016, Pages 1370-1383

Circular RNAs are long-lived and display only minimal early alterations in response to a growth factor

Author keywords

[No Author keywords available]

Indexed keywords

CIRCULAR RNA; EPIDERMAL GROWTH FACTOR; MESSENGER RNA; MICRORNA; RNA; UNCLASSIFIED DRUG; HBEGF PROTEIN, HUMAN; HEPARIN BINDING EPIDERMAL GROWTH FACTOR; RNA, CIRCULAR; TGFA PROTEIN, HUMAN; TRANSFORMING GROWTH FACTOR ALPHA;

EID: 84965000033     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkv1367     Document Type: Article
Times cited : (516)

References (61)
  • 1
    • 36849048584 scopus 로고    scopus 로고
    • Nuclear EGFR signalling network in cancers: Linking EGFR pathway to cell cycle progression, nitric oxide pathway and patient survival
    • Lo, H.W. and Hung, M.C. (2007) Nuclear EGFR signalling network in cancers: linking EGFR pathway to cell cycle progression, nitric oxide pathway and patient survival. Br. J. Cancer, 96(Suppl), R16-R20.
    • (2007) Br. J. Cancer , vol.96 , pp. R16-R20
    • Lo, H.W.1    Hung, M.C.2
  • 2
    • 77951967101 scopus 로고    scopus 로고
    • Roles for growth factors in cancer progression
    • Witsch, E., Sela, M. and Yarden, Y. (2010) Roles for growth factors in cancer progression. Physiology (Bethesda), 25, 85-101.
    • (2010) Physiology (Bethesda) , vol.25 , pp. 85-101
    • Witsch, E.1    Sela, M.2    Yarden, Y.3
  • 3
    • 0035869649 scopus 로고    scopus 로고
    • Mechanisms of platelet-derived growth factor-induced chemotaxis
    • Ronnstrand, L. and Heldin, C.H. (2001) Mechanisms of platelet-derived growth factor-induced chemotaxis. Int. J. Cancer, 91, 757-762.
    • (2001) Int. J. Cancer , vol.91 , pp. 757-762
    • Ronnstrand, L.1    Heldin, C.H.2
  • 4
    • 78951489049 scopus 로고    scopus 로고
    • Feedback regulation of EGFR signalling: Decision making by early and delayed loops
    • Avraham, R. and Yarden, Y. (2011) Feedback regulation of EGFR signalling: decision making by early and delayed loops. Nat. Rev. Mol. Cell Biol., 12, 104-117.
    • (2011) Nat. Rev. Mol. Cell Biol , vol.12 , pp. 104-117
    • Avraham, R.1    Yarden, Y.2
  • 6
    • 84900316922 scopus 로고    scopus 로고
    • A long noncoding RNA activated by TGF-beta promotes the invasion-metastasis cascade in hepatocellular carcinoma
    • Yuan, J.H., Yang, F., Wang, F., Ma, J.Z., Guo, Y.J., Tao, Q.F., Liu, F., Pan, W., Wang, T.T., Zhou, C.C. et al. (2014) A long noncoding RNA activated by TGF-beta promotes the invasion-metastasis cascade in hepatocellular carcinoma. Cancer Cell, 25, 666-681.
    • (2014) Cancer Cell , vol.25 , pp. 666-681
    • Yuan, J.H.1    Yang, F.2    Wang, F.3    Ma, J.Z.4    Guo, Y.J.5    Tao, Q.F.6    Liu, F.7    Pan, W.8    Wang, T.T.9    Zhou, C.C.10
  • 7
    • 0029053190 scopus 로고
    • Initiation of protein synthesis by the eukaryotic translational apparatus on circular RNAs
    • Chen, C.Y. and Sarnow, P. (1995) Initiation of protein synthesis by the eukaryotic translational apparatus on circular RNAs. Science, 268, 415-417.
    • (1995) Science , vol.268 , pp. 415-417
    • Chen, C.Y.1    Sarnow, P.2
  • 8
    • 84900322651 scopus 로고    scopus 로고
    • Detecting and characterizing circular RNAs
    • Jeck, W.R. and Sharpless, N.E. (2014) Detecting and characterizing circular RNAs. Nat. Biotechnol., 32, 453-461.
    • (2014) Nat. Biotechnol , vol.32 , pp. 453-461
    • Jeck, W.R.1    Sharpless, N.E.2
  • 14
    • 84911491114 scopus 로고    scopus 로고
    • Circular RNAs: Diversity of form and function
    • Lasda, E. and Parker, R. (2014) Circular RNAs: diversity of form and function. RNA, 20, 1829-1842.
    • (2014) RNA , vol.20 , pp. 1829-1842
    • Lasda, E.1    Parker, R.2
  • 16
    • 84884687363 scopus 로고    scopus 로고
    • Cell- Type specific features of circular RNA expression
    • Salzman, J., Chen, R.E., Olsen, M.N., Wang, P.L. and Brown, P.O. (2013) Cell- Type specific features of circular RNA expression. PLoS Genet., 9, e1003777.
    • (2013) Plos Genet , vol.9 , pp. e1003777
    • Salzman, J.1    Chen, R.E.2    Olsen, M.N.3    Wang, P.L.4    Brown, P.O.5
  • 18
    • 84876580450 scopus 로고    scopus 로고
    • A circuitous route to noncoding RNA
    • Wilusz, J.E. and Sharp, P.A. (2013) A circuitous route to noncoding RNA. Science, 340, 440-441.
    • (2013) Science , vol.340 , pp. 440-441
    • Wilusz, J.E.1    Sharp, P.A.2
  • 19
    • 84860171056 scopus 로고    scopus 로고
    • Transcriptome-wide discovery of circular RNAs in archaea
    • Danan, M., Schwartz, S., Edelheit, S. and Sorek, R. (2012) Transcriptome-wide discovery of circular RNAs in Archaea. Nucleic Acids Res., 40, 3131-3142.
    • (2012) Nucleic Acids Res , vol.40 , pp. 3131-3142
    • Danan, M.1    Schwartz, S.2    Edelheit, S.3    Sorek, R.4
  • 20
    • 84863045982 scopus 로고    scopus 로고
    • Circular RNAs are the predominant transcript isoform from hundreds of human genes in diverse cell types
    • Salzman, J., Gawad, C., Wang, P.L., Lacayo, N. and Brown, P.O. (2012) Circular RNAs are the predominant transcript isoform from hundreds of human genes in diverse cell types. Plos One, 7, e30733.
    • (2012) Plos One , vol.7 , pp. e30733
    • Salzman, J.1    Gawad, C.2    Wang, P.L.3    Lacayo, N.4    Brown, P.O.5
  • 22
    • 84892402186 scopus 로고    scopus 로고
    • Circ2 traits: A comprehensive database for circular RNA potentially associated with disease and traits
    • Ghosal, S., Das, S., Sen, R. and Chakrabarti, J. (2013) Circ2Traits: A comprehensive database for circular RNA potentially associated with disease and traits. Front. Bioinform. Comput. Biol., 4, 283.
    • (2013) Front. Bioinform. Comput. Biol , vol.4 , pp. 283
    • Ghosal, S.1    Das, S.2    Sen, R.3    Chakrabarti, J.4
  • 23
    • 84875370871 scopus 로고    scopus 로고
    • Molecular biology: Circles reshape the RNA world
    • Kosik, K.S. (2013) Molecular biology: circles reshape the RNA world. Nature, 495, 322-324.
    • (2013) Nature , vol.495 , pp. 322-324
    • Kosik, K.S.1
  • 24
    • 84891818924 scopus 로고    scopus 로고
    • Starbase v2.0: Decoding miRNA-ceRNA, miRNA-ncRNA and protein-RNA interaction networks from large-scale CLIP-Seq data
    • Li, J.-H., Liu, S., Zhou, H., Qu, L.-H. and Yang, J.-H. (2014) starBase v2.0: decoding miRNA-ceRNA, miRNA-ncRNA and protein-RNA interaction networks from large-scale CLIP-Seq data. Nucleic Acids Res., 42, D92-D97.
    • (2014) Nucleic Acids Res. , vol.42 , pp. D92-D97
    • Li, J.-H.1    Liu, S.2    Zhou, H.3    Qu, L.-H.4    Yang, J.-H.5
  • 25
    • 84877252350 scopus 로고    scopus 로고
    • From pseudo- ceRNAs to circ-ceRNAs: A tale of cross- Talk and competition
    • Taulli, R., Loretelli, C. and Pandolfi, P.P. (2013) From pseudo-ceRNAs to circ-ceRNAs: A tale of cross- Talk and competition. Nat. Struct. Mol. Biol., 20, 541-543.
    • (2013) Nat. Struct. Mol. Biol , vol.20 , pp. 541-543
    • Taulli, R.1    Loretelli, C.2    Pandolfi, P.P.3
  • 26
    • 84892573723 scopus 로고    scopus 로고
    • The multilayered complexity of ceRNA crosstalk and competition
    • Tay, Y., Rinn, J. and Pandolfi, P.P. (2014) The multilayered complexity of ceRNA crosstalk and competition. Nature, 505, 344-352.
    • (2014) Nature , vol.505 , pp. 344-352
    • Tay, Y.1    Rinn, J.2    Pandolfi, P.P.3
  • 27
    • 84956906428 scopus 로고    scopus 로고
    • Expanded identification and characterization of mammalian circular RNAs
    • Guo, J.U., Agarwal, V., Guo, H. and Bartel, D.P. (2014) Expanded identification and characterization of mammalian circular RNAs. Genome Biol., 15, 409.
    • (2014) Genome Biol. , vol.15 , pp. 409
    • Guo, J.U.1    Agarwal, V.2    Guo, H.3    Bartel, D.P.4
  • 29
    • 84937629100 scopus 로고    scopus 로고
    • Exon skipping is correlated with exon circularization
    • Kelly, S., Greenman, C., Cook, P.R. and Papantonis, A. (2015) Exon skipping is correlated with exon circularization. J. Mol. Biol., 427, 2414-2417.
    • (2015) J. Mol. Biol , vol.427 , pp. 2414-2417
    • Kelly, S.1    Greenman, C.2    Cook, P.R.3    Papantonis, A.4
  • 31
    • 0025129728 scopus 로고
    • Ultrastructural and immunocytochemical characterization of an immortalized human breast epithelial cell line, MCF-10
    • Tait, L., Soule, H.D. and Russo, J. (1990) Ultrastructural and immunocytochemical characterization of an immortalized human breast epithelial cell line, MCF-10. Cancer Res., 50, 6087-6094.
    • (1990) Cancer Res. , vol.50 , pp. 6087-6094
    • Tait, L.1    Soule, H.D.2    Russo, J.3
  • 37
    • 84877932998 scopus 로고    scopus 로고
    • An accessible database for mouse and human whole transcriptome qPCR primers
    • Zeisel, A., Yitzhaky, A., Bossel Ben-Moshe, N. and Domany, E. (2013) An accessible database for mouse and human whole transcriptome qPCR primers. Bioinformatics, 29, 1355-1356.
    • (2013) Bioinformatics , vol.29 , pp. 1355-1356
    • Zeisel, A.1    Yitzhaky, A.2    Bossel Ben-Moshe, N.3    Domany, E.4
  • 39
    • 77952850620 scopus 로고    scopus 로고
    • Halo- A Java framework for precise transcript half-life determination
    • Friedel, C.C., Kaufmann, S., Dölken, L. and Zimmer, R. (2010) HALO- A Java framework for precise transcript half-life determination. Bioinformatics, 26, 1264-1266.
    • (2010) Bioinformatics , vol.26 , pp. 1264-1266
    • Friedel, C.C.1    Kaufmann, S.2    Dölken, L.3    Zimmer, R.4
  • 43
    • 84875207585 scopus 로고    scopus 로고
    • High- Throughput chromatin immunoprecipitation for genome-wide mapping of in vivo protein-DNA interactions and epigenomic states
    • Blecher-Gonen, R., Barnett-Itzhaki, Z., Jaitin, D., Amann-Zalcenstein, D., Lara-Astiaso, D. and Amit, I. (2013) High- Throughput chromatin immunoprecipitation for genome-wide mapping of in vivo protein-DNA interactions and epigenomic states. Nat. Protoc., 539-554.
    • (2013) Nat. Protoc , pp. 539-554
    • Blecher-Gonen, R.1    Barnett-Itzhaki, Z.2    Jaitin, D.3    Amann-Zalcenstein, D.4    Lara-Astiaso, D.5    Amit, I.6
  • 44
    • 84859210032 scopus 로고    scopus 로고
    • Fast gapped-read alignment with bowtie 2
    • Langmead, B. and Salzberg, S.L. (2012) Fast gapped-read alignment with Bowtie 2. Nat. Meth., 9, 357-359.
    • (2012) Nat. Meth. , vol.9 , pp. 357-359
    • Langmead, B.1    Salzberg, S.L.2
  • 45
    • 77952567987 scopus 로고    scopus 로고
    • Simple combinations of lineage-determining transcription factors prime CIS-regulatory elements required for macrophage and B cell identities
    • Heinz, S., Benner, C., Spann, N., Bertolino, E., Lin, Y.C., Laslo, P., Cheng, J.X., Murre, C., Singh, H. and Glass, C.K. (2010) Simple combinations of lineage-determining transcription factors prime CIS-regulatory elements required for macrophage and B cell identities. Mol. Cell, 38, 576-589.
    • (2010) Mol. Cell , vol.38 , pp. 576-589
    • Heinz, S.1    Benner, C.2    Spann, N.3    Bertolino, E.4    Lin, Y.C.5    Laslo, P.6    Cheng, J.X.7    Murre, C.8    Singh, H.9    Glass, C.K.10
  • 47
    • 84908128765 scopus 로고    scopus 로고
    • CircBase: A database for circular RNAs
    • Glazar, P., Papavasileiou, P. and Rajewsky, N. (2014) circBase: A database for circular RNAs. RNA, 20, 1666-1670.
    • (2014) RNA , vol.20 , pp. 1666-1670
    • Glazar, P.1    Papavasileiou, P.2    Rajewsky, N.3
  • 48
    • 77951083459 scopus 로고    scopus 로고
    • Major role for mRNA stability in shaping the kinetics of gene induction
    • Elkon, R., Zlotorynski, E., Zeller, K.I. and Agami, R. (2010) Major role for mRNA stability in shaping the kinetics of gene induction. BMC Genomics, 11, 259.
    • (2010) BMC Genomics , vol.11 , pp. 259
    • Elkon, R.1    Zlotorynski, E.2    Zeller, K.I.3    Agami, R.4
  • 49
    • 34247238676 scopus 로고    scopus 로고
    • Genomics and gene transcription kinetics in yeast
    • Pérez-Ortín, J.E., Alepuz, P.M. and Moreno, J. (2007) Genomics and gene transcription kinetics in yeast. Trends Genet., 23, 250-257.
    • (2007) Trends Genet , vol.23 , pp. 250-257
    • Pérez-Ortín, J.E.1    Alepuz, P.M.2    Moreno, J.3
  • 50
    • 73049097101 scopus 로고    scopus 로고
    • Conserved principles of mammalian transcriptional regulation revealed by RNA half-life
    • Friedel, C.C., Dölken, L., Ruzsics, Z., Koszinowski, U.H. and Zimmer, R. (2009) Conserved principles of mammalian transcriptional regulation revealed by RNA half-life. Nucleic Acids Res., 37, e115.
    • (2009) Nucleic Acids Res , vol.37 , pp. e115
    • Friedel, C.C.1    Dölken, L.2    Ruzsics, Z.3    Koszinowski, U.H.4    Zimmer, R.5
  • 51
    • 84924330592 scopus 로고    scopus 로고
    • Competition between target sites of regulators shapes post- Transcriptional gene regulation
    • Jens, M. and Rajewsky, N. (2015) Competition between target sites of regulators shapes post- Transcriptional gene regulation. Nat. Rev. Genet., 16, 113-126.
    • (2015) Nat. Rev. Genet , vol.16 , pp. 113-126
    • Jens, M.1    Rajewsky, N.2
  • 52
    • 84901838697 scopus 로고    scopus 로고
    • Assessing the ceRNA hypothesis with quantitative measurements of miRNA and target abundance
    • Denzler, R., Agarwal, V., Stefano, J., Bartel, D.P. and Stoffel, M. (2014) Assessing the ceRNA hypothesis with quantitative measurements of miRNA and target abundance. Mol. Cell, 54, 766-776.
    • (2014) Mol. Cell , vol.54 , pp. 766-776
    • Denzler, R.1    Agarwal, V.2    Stefano, J.3    Bartel, D.P.4    Stoffel, M.5
  • 53
    • 84922418997 scopus 로고    scopus 로고
    • Endogenous miRNA and target concentrations determine susceptibility to potential ceRNA competition
    • Bosson, A.D., Zamudio, J.R. and Sharp, P.A. (2014) Endogenous miRNA and target concentrations determine susceptibility to potential ceRNA competition. Mol. Cell, 56, 347-359.
    • (2014) Mol. Cell , vol.56 , pp. 347-359
    • Bosson, A.D.1    Zamudio, J.R.2    Sharp, P.A.3
  • 54
    • 58249088751 scopus 로고    scopus 로고
    • Micro RNAs: Target recognition and regulatory functions
    • Bartel, D.P. (2009) Micro RNAs: Target recognition and regulatory functions. Cell, 136, 215-233.
    • (2009) Cell , vol.136 , pp. 215-233
    • Bartel, D.P.1
  • 57
    • 84915820022 scopus 로고    scopus 로고
    • Genome-wide analysis of drosophila circular RNAs reveals their structural and sequence properties and age-dependent neural accumulation
    • Westholm, J.O., Miura, P., Olson, S., Shenker, S., Joseph, B., Sanfilippo, P., Celniker, S.E., Graveley, B.R. and Lai, E.C. (2014) Genome-wide analysis of Drosophila circular RNAs reveals their structural and sequence properties and age-dependent neural accumulation. Cell Rep., 9, 1966-1980.
    • (2014) Cell Rep. , vol.9 , pp. 1966-1980
    • Westholm, J.O.1    Miura, P.2    Olson, S.3    Shenker, S.4    Joseph, B.5    Sanfilippo, P.6    Celniker, S.E.7    Graveley, B.R.8    Lai, E.C.9
  • 60
  • 61
    • 84908093894 scopus 로고    scopus 로고
    • Short intronic repeat sequences facilitate circular RNA production
    • Liang, D. and Wilusz, J.E. (2014) Short intronic repeat sequences facilitate circular RNA production. Genes Dev., 28, 2233-2247.
    • (2014) Genes Dev , vol.28 , pp. 2233-2247
    • Liang, D.1    Wilusz, J.E.2


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