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Volumn 98, Issue 4, 2016, Pages 709-727

Genomic Characterization of Esophageal Squamous Cell Carcinoma Reveals Critical Genes Underlying Tumorigenesis and Poor Prognosis

Author keywords

[No Author keywords available]

Indexed keywords

MICRORNA; CARRIER PROTEIN; CELL CYCLE PROTEIN; FADD PROTEIN, HUMAN; FAS ASSOCIATED DEATH DOMAIN PROTEIN; MEMBRANE PROTEIN; MYBL2 PROTEIN, HUMAN; NERVE PROTEIN; SHANK2 PROTEIN, HUMAN; TRANSACTIVATOR PROTEIN; VANGL1 PROTEIN, HUMAN;

EID: 84964917106     PISSN: 00029297     EISSN: 15376605     Source Type: Journal    
DOI: 10.1016/j.ajhg.2016.02.021     Document Type: Article
Times cited : (119)

References (61)
  • 1
    • 69349101039 scopus 로고    scopus 로고
    • Treatment of esophageal cancer based on histology: A surveillance epidemiology and end results analysis
    • D.T. Chang, C. Chapman, J. Shen, Z. Su, and A.C. Koong Treatment of esophageal cancer based on histology: a surveillance epidemiology and end results analysis Am. J. Clin. Oncol. 32 2009 405 410
    • (2009) Am. J. Clin. Oncol. , vol.32 , pp. 405-410
    • Chang, D.T.1    Chapman, C.2    Shen, J.3    Su, Z.4    Koong, A.C.5
  • 2
    • 76949094319 scopus 로고    scopus 로고
    • Long-term results of a randomized trial of surgery with or without preoperative chemotherapy in esophageal cancer
    • W.H. Allum, S.P. Stenning, J. Bancewicz, P.I. Clark, and R.E. Langley Long-term results of a randomized trial of surgery with or without preoperative chemotherapy in esophageal cancer J. Clin. Oncol. 27 2009 5062 5067
    • (2009) J. Clin. Oncol. , vol.27 , pp. 5062-5067
    • Allum, W.H.1    Stenning, S.P.2    Bancewicz, J.3    Clark, P.I.4    Langley, R.E.5
  • 3
    • 70350241385 scopus 로고    scopus 로고
    • Genome-wide association study in esophageal squamous cell carcinoma
    • A.J. Bass, and M. Meyerson Genome-wide association study in esophageal squamous cell carcinoma Gastroenterology 137 2009 1573 1576
    • (2009) Gastroenterology , vol.137 , pp. 1573-1576
    • Bass, A.J.1    Meyerson, M.2
  • 4
    • 77956626748 scopus 로고    scopus 로고
    • Genome-wide association study of esophageal squamous cell carcinoma in Chinese subjects identifies susceptibility loci at PLCE1 and C20orf54
    • L.D. Wang, F.Y. Zhou, X.M. Li, L.D. Sun, X. Song, Y. Jin, J.M. Li, G.Q. Kong, H. Qi, J. Cui, and et al. Genome-wide association study of esophageal squamous cell carcinoma in Chinese subjects identifies susceptibility loci at PLCE1 and C20orf54 Nat. Genet. 42 2010 759 763
    • (2010) Nat. Genet. , vol.42 , pp. 759-763
    • Wang, L.D.1    Zhou, F.Y.2    Li, X.M.3    Sun, L.D.4    Song, X.5    Jin, Y.6    Li, J.M.7    Kong, G.Q.8    Qi, H.9    Cui, J.10
  • 5
    • 79959769727 scopus 로고    scopus 로고
    • Genome-wide association study identifies three new susceptibility loci for esophageal squamous-cell carcinoma in Chinese populations
    • C. Wu, Z. Hu, Z. He, W. Jia, F. Wang, Y. Zhou, Z. Liu, Q. Zhan, Y. Liu, D. Yu, and et al. Genome-wide association study identifies three new susceptibility loci for esophageal squamous-cell carcinoma in Chinese populations Nat. Genet. 43 2011 679 684
    • (2011) Nat. Genet. , vol.43 , pp. 679-684
    • Wu, C.1    Hu, Z.2    He, Z.3    Jia, W.4    Wang, F.5    Zhou, Y.6    Liu, Z.7    Zhan, Q.8    Liu, Y.9    Yu, D.10
  • 6
    • 84878698619 scopus 로고    scopus 로고
    • Genome-wide association study identifies common variants in SLC39A6 associated with length of survival in esophageal squamous-cell carcinoma
    • C. Wu, D. Li, W. Jia, Z. Hu, Y. Zhou, D. Yu, T. Tong, M. Wang, D. Lin, Y. Qiao, and et al. Genome-wide association study identifies common variants in SLC39A6 associated with length of survival in esophageal squamous-cell carcinoma Nat. Genet. 45 2013 632 638
    • (2013) Nat. Genet. , vol.45 , pp. 632-638
    • Wu, C.1    Li, D.2    Jia, W.3    Hu, Z.4    Zhou, Y.5    Yu, D.6    Tong, T.7    Wang, M.8    Lin, D.9    Qiao, Y.10
  • 7
    • 77956626748 scopus 로고    scopus 로고
    • Genome-wide association study of esophageal squamous cell carcinoma in Chinese subjects identifies susceptibility loci at PLCE1 and C20orf54
    • L.D. Wang, F.Y. Zhou, X.M. Li, L.D. Sun, X. Song, Y. Jin, J.M. Li, G.Q. Kong, H. Qi, J. Cui, and et al. Genome-wide association study of esophageal squamous cell carcinoma in Chinese subjects identifies susceptibility loci at PLCE1 and C20orf54 Nat. Genet. 42 2010 759 763
    • (2010) Nat. Genet. , vol.42 , pp. 759-763
    • Wang, L.D.1    Zhou, F.Y.2    Li, X.M.3    Sun, L.D.4    Song, X.5    Jin, Y.6    Li, J.M.7    Kong, G.Q.8    Qi, H.9    Cui, J.10
  • 9
    • 0031812661 scopus 로고    scopus 로고
    • P53 alterations in oesophageal cancer: Association with clinicopathological features, risk factors, and survival
    • A.G. Casson, M. Tammemagi, S. Eskandarian, M. Redston, J. McLaughlin, and H. Ozcelik p53 alterations in oesophageal cancer: association with clinicopathological features, risk factors, and survival MP, Mol. Pathol. 51 1998 71 79
    • (1998) MP, Mol. Pathol. , vol.51 , pp. 71-79
    • Casson, A.G.1    Tammemagi, M.2    Eskandarian, S.3    Redston, M.4    McLaughlin, J.5    Ozcelik, H.6
  • 12
    • 84899747138 scopus 로고    scopus 로고
    • Identification of genomic alterations in oesophageal squamous cell cancer
    • Y. Song, L. Li, Y. Ou, Z. Gao, E. Li, X. Li, W. Zhang, J. Wang, L. Xu, Y. Zhou, and et al. Identification of genomic alterations in oesophageal squamous cell cancer Nature 509 2014 91 95
    • (2014) Nature , vol.509 , pp. 91-95
    • Song, Y.1    Li, L.2    Ou, Y.3    Gao, Z.4    Li, E.5    Li, X.6    Zhang, W.7    Wang, J.8    Xu, L.9    Zhou, Y.10
  • 14
    • 84926142624 scopus 로고    scopus 로고
    • Genomic analyses reveal mutational signatures and frequently altered genes in esophageal squamous cell carcinoma
    • L. Zhang, Y. Zhou, C. Cheng, H. Cui, L. Cheng, P. Kong, J. Wang, Y. Li, W. Chen, B. Song, and et al. Genomic analyses reveal mutational signatures and frequently altered genes in esophageal squamous cell carcinoma Am. J. Hum. Genet. 96 2015 597 611
    • (2015) Am. J. Hum. Genet. , vol.96 , pp. 597-611
    • Zhang, L.1    Zhou, Y.2    Cheng, C.3    Cui, H.4    Cheng, L.5    Kong, P.6    Wang, J.7    Li, Y.8    Chen, W.9    Song, B.10
  • 17
    • 84964801345 scopus 로고    scopus 로고
    • Gviz: Plotting data and annotation information along genomic coordinates
    • F, H., S, D., R, I., A, M., S, L., G, T., and L, P.
    • F, H., S, D., R, I., A, M., S, L., G, T., and L, P. (2014). Gviz: Plotting data and annotation information along genomic coordinates. R package version 1.10.3.
    • (2014) R Package Version 1.10.3.
  • 18
    • 84881167398 scopus 로고    scopus 로고
    • RCircos: An R package for Circos 2D track plots
    • H. Zhang, P. Meltzer, and S. Davis RCircos: an R package for Circos 2D track plots BMC Bioinformatics 14 2013 244
    • (2013) BMC Bioinformatics , vol.14 , pp. 244
    • Zhang, H.1    Meltzer, P.2    Davis, S.3
  • 20
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • H. Li, and R. Durbin Fast and accurate short read alignment with Burrows-Wheeler transform Bioinformatics 25 2009 1754 1760
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 26
    • 77956534324 scopus 로고    scopus 로고
    • ANNOVAR: Functional annotation of genetic variants from high-throughput sequencing data
    • K. Wang, M. Li, and H. Hakonarson ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data Nucleic Acids Res. 38 2010 e164
    • (2010) Nucleic Acids Res. , vol.38 , pp. e164
    • Wang, K.1    Li, M.2    Hakonarson, H.3
  • 29
    • 0035026704 scopus 로고    scopus 로고
    • Predicting deleterious amino acid substitutions
    • P.C. Ng, and S. Henikoff Predicting deleterious amino acid substitutions Genome Res. 11 2001 863 874
    • (2001) Genome Res. , vol.11 , pp. 863-874
    • Ng, P.C.1    Henikoff, S.2
  • 31
    • 77951770756 scopus 로고    scopus 로고
    • BEDTools: A flexible suite of utilities for comparing genomic features
    • A.R. Quinlan, and I.M. Hall BEDTools: a flexible suite of utilities for comparing genomic features Bioinformatics 26 2010 841 842
    • (2010) Bioinformatics , vol.26 , pp. 841-842
    • Quinlan, A.R.1    Hall, I.M.2
  • 33
    • 79955495946 scopus 로고    scopus 로고
    • Global gene expression profiling and validation in esophageal squamous cell carcinoma and its association with clinical phenotypes
    • H. Su, N. Hu, H.H. Yang, C. Wang, M. Takikita, Q.H. Wang, C. Giffen, R. Clifford, S.M. Hewitt, J.Z. Shou, and et al. Global gene expression profiling and validation in esophageal squamous cell carcinoma and its association with clinical phenotypes Clin. Cancer Res. 17 2011 2955 2966
    • (2011) Clin. Cancer Res. , vol.17 , pp. 2955-2966
    • Su, H.1    Hu, N.2    Yang, H.H.3    Wang, C.4    Takikita, M.5    Wang, Q.H.6    Giffen, C.7    Clifford, R.8    Hewitt, S.M.9    Shou, J.Z.10
  • 34
    • 77957924361 scopus 로고    scopus 로고
    • Genome wide analysis of DNA copy number neutral loss of heterozygosity (CNNLOH) and its relation to gene expression in esophageal squamous cell carcinoma
    • N. Hu, R.J. Clifford, H.H. Yang, C. Wang, A.M. Goldstein, T. Ding, P.R. Taylor, and M.P. Lee Genome wide analysis of DNA copy number neutral loss of heterozygosity (CNNLOH) and its relation to gene expression in esophageal squamous cell carcinoma BMC Genomics 11 2010 576
    • (2010) BMC Genomics , vol.11 , pp. 576
    • Hu, N.1    Clifford, R.J.2    Yang, H.H.3    Wang, C.4    Goldstein, A.M.5    Ding, T.6    Taylor, P.R.7    Lee, M.P.8
  • 37
    • 11844278458 scopus 로고    scopus 로고
    • Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets
    • B.P. Lewis, C.B. Burge, and D.P. Bartel Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets Cell 120 2005 15 20
    • (2005) Cell , vol.120 , pp. 15-20
    • Lewis, B.P.1    Burge, C.B.2    Bartel, D.P.3
  • 38
    • 44149083586 scopus 로고    scopus 로고
    • MiRDB: A microRNA target prediction and functional annotation database with a wiki interface
    • X. Wang miRDB: a microRNA target prediction and functional annotation database with a wiki interface RNA 14 2008 1012 1017
    • (2008) RNA , vol.14 , pp. 1012-1017
    • Wang, X.1
  • 39
    • 38849145861 scopus 로고    scopus 로고
    • Prediction of both conserved and nonconserved microRNA targets in animals
    • X. Wang, and I.M. El Naqa Prediction of both conserved and nonconserved microRNA targets in animals Bioinformatics 24 2008 325 332
    • (2008) Bioinformatics , vol.24 , pp. 325-332
    • Wang, X.1    El Naqa, I.M.2
  • 41
    • 83555177355 scopus 로고    scopus 로고
    • MicroRNA-375 inhibits tumour growth and metastasis in oesophageal squamous cell carcinoma through repressing insulin-like growth factor 1 receptor
    • K.L. Kong, D.L. Kwong, T.H. Chan, S.Y. Law, L. Chen, Y. Li, Y.R. Qin, and X.Y. Guan MicroRNA-375 inhibits tumour growth and metastasis in oesophageal squamous cell carcinoma through repressing insulin-like growth factor 1 receptor Gut 61 2012 33 42
    • (2012) Gut , vol.61 , pp. 33-42
    • Kong, K.L.1    Kwong, D.L.2    Chan, T.H.3    Law, S.Y.4    Chen, L.5    Li, Y.6    Qin, Y.R.7    Guan, X.Y.8
  • 42
    • 33644764887 scopus 로고    scopus 로고
    • An inducible short-hairpin RNA vector against osteopontin reduces metastatic potential of human esophageal squamous cell carcinoma in vitro and in vivo
    • T. Ito, Y. Hashimoto, E. Tanaka, T. Kan, S. Tsunoda, F. Sato, M. Higashiyama, T. Okumura, and Y. Shimada An inducible short-hairpin RNA vector against osteopontin reduces metastatic potential of human esophageal squamous cell carcinoma in vitro and in vivo Clin. Cancer Res. 12 2006 1308 1316
    • (2006) Clin. Cancer Res. , vol.12 , pp. 1308-1316
    • Ito, T.1    Hashimoto, Y.2    Tanaka, E.3    Kan, T.4    Tsunoda, S.5    Sato, F.6    Higashiyama, M.7    Okumura, T.8    Shimada, Y.9
  • 44
    • 0036141525 scopus 로고    scopus 로고
    • The planar cell-polarity gene stbm regulates cell behaviour and cell fate in vertebrate embryos
    • M. Park, and R.T. Moon The planar cell-polarity gene stbm regulates cell behaviour and cell fate in vertebrate embryos Nat. Cell Biol. 4 2002 20 25
    • (2002) Nat. Cell Biol. , vol.4 , pp. 20-25
    • Park, M.1    Moon, R.T.2
  • 45
    • 78650656885 scopus 로고    scopus 로고
    • MYBL2, a link between proliferation and differentiation in maturing colon epithelial cells
    • M. Papetti, and L.H. Augenlicht MYBL2, a link between proliferation and differentiation in maturing colon epithelial cells J. Cell. Physiol. 226 2011 785 791
    • (2011) J. Cell. Physiol. , vol.226 , pp. 785-791
    • Papetti, M.1    Augenlicht, L.H.2
  • 48
    • 84862654141 scopus 로고    scopus 로고
    • Genome-wide screening for genetic alterations in esophageal cancer by aCGH identifies 11q13 amplification oncogenes associated with nodal metastasis
    • J. Ying, L. Shan, J. Li, L. Zhong, L. Xue, H. Zhao, L. Li, C. Langford, L. Guo, T. Qiu, and et al. Genome-wide screening for genetic alterations in esophageal cancer by aCGH identifies 11q13 amplification oncogenes associated with nodal metastasis PLoS ONE 7 2012 e39797
    • (2012) PLoS ONE , vol.7 , pp. e39797
    • Ying, J.1    Shan, L.2    Li, J.3    Zhong, L.4    Xue, L.5    Zhao, H.6    Li, L.7    Langford, C.8    Guo, L.9    Qiu, T.10
  • 49
    • 84864296088 scopus 로고    scopus 로고
    • Genomic copy-number alterations of MYC and FHIT genes are associated with survival in esophageal squamous-cell carcinoma
    • Y. Miyawaki, H. Kawachi, A. Ooi, Y. Eishi, T. Kawano, J. Inazawa, and I. Imoto Genomic copy-number alterations of MYC and FHIT genes are associated with survival in esophageal squamous-cell carcinoma Cancer Sci. 103 2012 1558 1566
    • (2012) Cancer Sci. , vol.103 , pp. 1558-1566
    • Miyawaki, Y.1    Kawachi, H.2    Ooi, A.3    Eishi, Y.4    Kawano, T.5    Inazawa, J.6    Imoto, I.7
  • 51
    • 84871846692 scopus 로고    scopus 로고
    • WNT signalling pathways as therapeutic targets in cancer
    • J.N. Anastas, and R.T. Moon WNT signalling pathways as therapeutic targets in cancer Nat. Rev. Cancer 13 2013 11 26
    • (2013) Nat. Rev. Cancer , vol.13 , pp. 11-26
    • Anastas, J.N.1    Moon, R.T.2
  • 52
    • 84897997022 scopus 로고    scopus 로고
    • A disrupted RNA editing balance mediated by ADARs (Adenosine DeAminases that act on RNA) in human hepatocellular carcinoma
    • T.H. Chan, C.H. Lin, L. Qi, J. Fei, Y. Li, K.J. Yong, M. Liu, Y. Song, R.K. Chow, V.H. Ng, and et al. A disrupted RNA editing balance mediated by ADARs (Adenosine DeAminases that act on RNA) in human hepatocellular carcinoma Gut 63 2014 832 843
    • (2014) Gut , vol.63 , pp. 832-843
    • Chan, T.H.1    Lin, C.H.2    Qi, L.3    Fei, J.4    Li, Y.5    Yong, K.J.6    Liu, M.7    Song, Y.8    Chow, R.K.9    Ng, V.H.10
  • 53
    • 60049091422 scopus 로고    scopus 로고
    • KITENIN recruits Dishevelled/PKC delta to form a functional complex and controls the migration and invasiveness of colorectal cancer cells
    • D.H. Kho, J.A. Bae, J.H. Lee, H.J. Cho, S.H. Cho, J.H. Lee, Y.W. Seo, K.Y. Ahn, I.J. Chung, and K.K. Kim KITENIN recruits Dishevelled/PKC delta to form a functional complex and controls the migration and invasiveness of colorectal cancer cells Gut 58 2009 509 519
    • (2009) Gut , vol.58 , pp. 509-519
    • Kho, D.H.1    Bae, J.A.2    Lee, J.H.3    Cho, H.J.4    Cho, S.H.5    Lee, J.H.6    Seo, Y.W.7    Ahn, K.Y.8    Chung, I.J.9    Kim, K.K.10
  • 56
    • 79952383925 scopus 로고    scopus 로고
    • KITENIN is associated with activation of AP-1 target genes via MAPK cascades signaling in human hepatocellular carcinoma progression
    • S.B. Cho, Y.L. Park, S.J. Park, S.Y. Park, W.S. Lee, C.H. Park, S.K. Choi, Y.H. Heo, Y.S. Koh, C.K. Cho, and et al. KITENIN is associated with activation of AP-1 target genes via MAPK cascades signaling in human hepatocellular carcinoma progression Oncol. Res. 19 2011 115 123
    • (2011) Oncol. Res. , vol.19 , pp. 115-123
    • Cho, S.B.1    Park, Y.L.2    Park, S.J.3    Park, S.Y.4    Lee, W.S.5    Park, C.H.6    Choi, S.K.7    Heo, Y.H.8    Koh, Y.S.9    Cho, C.K.10
  • 57
    • 84923286238 scopus 로고    scopus 로고
    • KITENIN promotes glioma invasiveness and progression, associated with the induction of EMT and stemness markers
    • K.H. Lee, E.J. Ahn, S.J. Oh, O. Kim, Y.E. Joo, J.A. Bae, S. Yoon, H.H. Ryu, S. Jung, K.K. Kim, and et al. KITENIN promotes glioma invasiveness and progression, associated with the induction of EMT and stemness markers Oncotarget 6 2015 3240 3253
    • (2015) Oncotarget , vol.6 , pp. 3240-3253
    • Lee, K.H.1    Ahn, E.J.2    Oh, S.J.3    Kim, O.4    Joo, Y.E.5    Bae, J.A.6    Yoon, S.7    Ryu, H.H.8    Jung, S.9    Kim, K.K.10
  • 60
    • 77957065335 scopus 로고    scopus 로고
    • SOX2 identified as a target gene for the amplification at 3q26 that is frequently detected in esophageal squamous cell carcinoma
    • Y. Gen, K. Yasui, Y. Zen, K. Zen, O. Dohi, M. Endo, K. Tsuji, N. Wakabayashi, Y. Itoh, Y. Naito, and et al. SOX2 identified as a target gene for the amplification at 3q26 that is frequently detected in esophageal squamous cell carcinoma Cancer Genet. Cytogenet. 202 2010 82 93
    • (2010) Cancer Genet. Cytogenet. , vol.202 , pp. 82-93
    • Gen, Y.1    Yasui, K.2    Zen, Y.3    Zen, K.4    Dohi, O.5    Endo, M.6    Tsuji, K.7    Wakabayashi, N.8    Itoh, Y.9    Naito, Y.10


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