메뉴 건너뛰기




Volumn 532, Issue 7598, 2016, Pages 264-267

Nucleotide excision repair is impaired by binding of transcription factors to DNA

Author keywords

[No Author keywords available]

Indexed keywords

DNA; TRANSCRIPTION FACTOR; DNA BINDING PROTEIN; NUCLEOSOME; PROTEIN BINDING;

EID: 84964403759     PISSN: 00280836     EISSN: 14764687     Source Type: Journal    
DOI: 10.1038/nature17661     Document Type: Article
Times cited : (222)

References (36)
  • 1
  • 2
    • 84865248380 scopus 로고    scopus 로고
    • Chromatin organization is a major influence on regional mutation rates in human cancer cells
    • Schuster-Böckler, B., Lehner, B. Chromatin organization is a major influence on regional mutation rates in human cancer cells. Nature 488, 504-507 (2012).
    • (2012) Nature , vol.488 , pp. 504-507
    • Schuster-Böckler, B.1    Lehner, B.2
  • 3
    • 84880507665 scopus 로고    scopus 로고
    • Mutational heterogeneity in cancer and the search for new cancer-associated genes
    • Lawrence, M. S. et al. Mutational heterogeneity in cancer and the search for new cancer-associated genes. Nature 499, 214-218 (2013).
    • (2013) Nature , vol.499 , pp. 214-218
    • Lawrence, M.S.1
  • 4
    • 84892161493 scopus 로고    scopus 로고
    • Reduced local mutation density in regulatory DNA of cancer genomes is linked to DNA repair
    • Polak, P. et al. Reduced local mutation density in regulatory DNA of cancer genomes is linked to DNA repair. Nature Biotechnol. 32, 71-75 (2014).
    • (2014) Nature Biotechnol. , vol.32 , pp. 71-75
    • Polak, P.1
  • 5
    • 84923358817 scopus 로고    scopus 로고
    • Cell-of-origin chromatin organization shapes the mutational landscape of cancer
    • Polak, P. et al. Cell-of-origin chromatin organization shapes the mutational landscape of cancer. Nature 518, 360-364 (2015).
    • (2015) Nature , vol.518 , pp. 360-364
    • Polak, P.1
  • 6
    • 84929463303 scopus 로고    scopus 로고
    • Genome-wide analysis of human global and transcription-coupled excision repair of UV damage at single-nucleotide resolution
    • Hu, J., Adar, S., Selby, C. P., Lieb, J. D., Sancar, A. Genome-wide analysis of human global and transcription-coupled excision repair of UV damage at single-nucleotide resolution. Genes Dev. 29, 948-960 (2015).
    • (2015) Genes Dev. , vol.29 , pp. 948-960
    • Hu, J.1    Adar, S.2    Selby, C.P.3    Lieb, J.D.4    Sancar, A.5
  • 7
    • 0028270157 scopus 로고
    • DNA repair rates mapped along the human PGK1 gene at nucleotide resolution
    • Gao, S., Drouin, R., Holmquist, G. P. DNA repair rates mapped along the human PGK1 gene at nucleotide resolution. Science 263, 1438-1440 (1994).
    • (1994) Science , vol.263 , pp. 1438-1440
    • Gao, S.1    Drouin, R.2    Holmquist, G.P.3
  • 8
    • 0033105605 scopus 로고    scopus 로고
    • Tight correlation between inhibition of DNA repair in vitro and transcription factor IIIA binding in a 5S ribosomal RNA gene
    • Conconi, A., Liu, X., Koriazova, L., Ackerman, E. J., Smerdon, M. J. Tight correlation between inhibition of DNA repair in vitro and transcription factor IIIA binding in a 5S ribosomal RNA gene. EMBO J. 18, 1387-1396 (1999).
    • (1999) EMBO J. , vol.18 , pp. 1387-1396
    • Conconi, A.1    Liu, X.2    Koriazova, L.3    Ackerman, E.J.4    Smerdon, M.J.5
  • 9
    • 77957966453 scopus 로고    scopus 로고
    • The International Cancer Genome Consortium International network of cancer genome projects
    • The International Cancer Genome Consortium International network of cancer genome projects. Nature 464, 993-998 (2010).
    • (2010) Nature , vol.464 , pp. 993-998
  • 10
    • 84884994218 scopus 로고    scopus 로고
    • The Cancer Genome Atlas Research Network the Cancer Genome Atlas pan-cancer analysis project
    • The Cancer Genome Atlas Research Network The Cancer Genome Atlas pan-cancer analysis project. Nature Genet. 45, 1113-1120 (2013).
    • (2013) Nature Genet , vol.45 , pp. 1113-1120
  • 11
    • 84882837534 scopus 로고    scopus 로고
    • Signatures of mutational processes in human cancer
    • Alexandrov, L. B. et al. Signatures of mutational processes in human cancer. Nature 500, 415-421 (2013).
    • (2013) Nature , vol.500 , pp. 415-421
    • Alexandrov, L.B.1
  • 12
    • 84925615834 scopus 로고    scopus 로고
    • Differential DNA mismatch repair underlies mutation rate variation across the human genome
    • Supek, F., Lehner, B. Differential DNA mismatch repair underlies mutation rate variation across the human genome. Nature 521, 81-84 (2015).
    • (2015) Nature , vol.521 , pp. 81-84
    • Supek, F.1    Lehner, B.2
  • 13
    • 0034461931 scopus 로고    scopus 로고
    • DNA damage in the nucleosome core is refractory to repair by human excision nuclease
    • Hara, R., Mo, J., Sancar, A. DNA damage in the nucleosome core is refractory to repair by human excision nuclease. Mol. Cell. Biol. 20, 9173-9181 (2000).
    • (2000) Mol. Cell. Biol. , vol.20 , pp. 9173-9181
    • Hara, R.1    Mo, J.2    Sancar, A.3
  • 14
    • 84943328026 scopus 로고    scopus 로고
    • Increasing nucleosome occupancy is correlated with an increasing mutation rate so long as DNA repair machinery is intact
    • Yazdi, P. G. et al. Increasing nucleosome occupancy is correlated with an increasing mutation rate so long as dna repair machinery is intact. PLoS ONE 10, e0136574 (2015).
    • (2015) PLoS ONE , vol.10 , pp. e0136574
    • Yazdi, P.G.1
  • 16
    • 0030111234 scopus 로고    scopus 로고
    • UV damage and repair mechanisms in mammalian cells
    • Tornaletti, S., Pfeifer, G. P. UV damage and repair mechanisms in mammalian cells. Bioessays 18, 221-228 (1996).
    • (1996) Bioessays , vol.18 , pp. 221-228
    • Tornaletti, S.1    Pfeifer, G.P.2
  • 17
    • 84924072858 scopus 로고    scopus 로고
    • Lagging-strand replication shapes the mutational landscape of the genome
    • Reijns, M. A. et al. Lagging-strand replication shapes the mutational landscape of the genome. Nature 518, 502-506 (2015).
    • (2015) Nature , vol.518 , pp. 502-506
    • Reijns, M.A.1
  • 18
    • 84933278077 scopus 로고    scopus 로고
    • CTCF/cohesin-binding sites are frequently mutated in cancer
    • Katainen, R. et al. CTCF/cohesin-binding sites are frequently mutated in cancer. Nature Genet. 47, 818-821 (2015).
    • (2015) Nature Genet. , vol.47 , pp. 818-821
    • Katainen, R.1
  • 19
    • 84922527340 scopus 로고    scopus 로고
    • Systematic analysis of noncoding somatic mutations and gene expression alterations across 14 tumor types
    • Fredriksson, N. J., Ny, L., Nilsson, J. A., Larsson, E. Systematic analysis of noncoding somatic mutations and gene expression alterations across 14 tumor types. Nature Genet. 46, 1258-1263 (2014).
    • (2014) Nature Genet. , vol.46 , pp. 1258-1263
    • Fredriksson, N.J.1    Ny, L.2    Nilsson, J.A.3    Larsson, E.4
  • 20
    • 84929991442 scopus 로고    scopus 로고
    • High burden and pervasive positive selection of somatic mutations in normal human skin
    • Martincorena, I. et al. High burden and pervasive positive selection of somatic mutations in normal human skin. Science 348, 880-886 (2015).
    • (2015) Science , vol.348 , pp. 880-886
    • Martincorena, I.1
  • 22
    • 0029058984 scopus 로고
    • UV light as a footprinting agent: Modulation of UV-induced DNA damage by transcription factors bound at the promoters of three human genes
    • Tornaletti, S., Pfeifer, G. P. UV light as a footprinting agent: modulation of UV-induced DNA damage by transcription factors bound at the promoters of three human genes. J. Mol. Biol. 249, 714-728 (1995).
    • (1995) J. Mol. Biol. , vol.249 , pp. 714-728
    • Tornaletti, S.1    Pfeifer, G.P.2
  • 23
    • 0005001210 scopus 로고
    • UV-induced formation of pyrimidine dimers in nucleosome core DNA is strongly modulated with a period of 10.3 bases
    • Gale, J. M., Nissen, K. A., Smerdon, M. J. UV-induced formation of pyrimidine dimers in nucleosome core DNA is strongly modulated with a period of 10.3 bases. Proc. Natl Acad. Sci. USA 84, 6644-6648 (1987).
    • (1987) Proc. Natl Acad. Sci. USA , vol.84 , pp. 6644-6648
    • Gale, J.M.1    Nissen, K.A.2    Smerdon, M.J.3
  • 24
    • 84865790047 scopus 로고    scopus 로고
    • An integrated encyclopedia of DNA elements in the human genome
    • ENCODE Project Consortium
    • ENCODE Project Consortium. An integrated encyclopedia of DNA elements in the human genome. Nature 489, 57-74 (2012).
    • (2012) Nature , vol.489 , pp. 57-74
  • 26
    • 62349131315 scopus 로고    scopus 로고
    • DNA repair in mammalian cells
    • Nouspikel, T. DNA repair in mammalian cells. Cell. Mol. Life Sci. 66, 994-1009 (2009).
    • (2009) Cell. Mol. Life Sci. , vol.66 , pp. 994-1009
    • Nouspikel, T.1
  • 27
    • 84961971182 scopus 로고    scopus 로고
    • Genomic approaches to DNA repair and mutagenesis
    • Wyrick, J. J., Roberts, S. A. Genomic approaches to DNA repair and mutagenesis. DNA Repair (Amst.) 36, 146-155 (2015).
    • (2015) DNA Repair (Amst.) , vol.36 , pp. 146-155
    • Wyrick, J.J.1    Roberts, S.A.2
  • 28
    • 84885639776 scopus 로고    scopus 로고
    • Integrative annotation of variants from 1092 humans: Application to cancer genomics
    • Khurana, E. et al. Integrative annotation of variants from 1092 humans: application to cancer genomics. Science 342, 1235587 (2013).
    • (2013) Science , vol.342 , pp. 1235587
    • Khurana, E.1
  • 29
    • 84865760395 scopus 로고    scopus 로고
    • GENCODE: The reference human genome annotation for the ENCODE Project
    • Harrow, J. et al. GENCODE: the reference human genome annotation for The ENCODE Project. Genome Res. 22, 1760-1774 (2012).
    • (2012) Genome Res. , vol.22 , pp. 1760-1774
    • Harrow, J.1
  • 30
    • 84923362619 scopus 로고    scopus 로고
    • Integrative analysis of 111 reference human epigenomes
    • Roadmap Epigenomics Consortium, et al.
    • Roadmap Epigenomics Consortium et al. Integrative analysis of 111 reference human epigenomes. Nature 518, 317-330 (2015).
    • (2015) Nature , vol.518 , pp. 317-330
  • 31
    • 84893863046 scopus 로고    scopus 로고
    • Discovery of directional and nondirectional pioneer transcription factors by modeling DNase profile magnitude and shape
    • Sherwood, R. I. et al. Discovery of directional and nondirectional pioneer transcription factors by modeling DNase profile magnitude and shape. Nature Biotechnol. 32, 171-178 (2014).
    • (2014) Nature Biotechnol. , vol.32 , pp. 171-178
    • Sherwood, R.I.1
  • 32
    • 84855989774 scopus 로고    scopus 로고
    • Fast computation and applications of genome mappability
    • Derrien, T. et al. Fast computation and applications of genome mappability. PLoS ONE 7, e30377 (2012).
    • (2012) PLoS ONE , vol.7 , pp. e30377
    • Derrien, T.1
  • 33
    • 0001677717 scopus 로고
    • Controlling the false discovery rate: A practical and powerful approach to multiple testing
    • Benjamini, Y., Hochberg, Y. Controlling the false discovery rate: a practical and powerful approach to multiple testing. J. R. Stat. Soc. 57, 289-300 (1995).
    • (1995) J. R. Stat. Soc. , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 34
    • 77951770756 scopus 로고    scopus 로고
    • BEDTools: A flexible suite of utilities for comparing genomic features
    • Quinlan, A. R., Hall, I. M. BEDTools: a flexible suite of utilities for comparing genomic features. Bioinformatics 26, 841-842 (2010).
    • (2010) Bioinformatics , vol.26 , pp. 841-842
    • Quinlan, A.R.1    Hall, I.M.2
  • 35
  • 36
    • 84955592205 scopus 로고    scopus 로고
    • Mutational strand asymmetries in cancer genomes reveal mechanisms of DNA damage and repair
    • Haradhvala, N. J. et al. Mutational strand asymmetries in cancer genomes reveal mechanisms of DNA damage and repair. Cell 164, 538-549 (2016).
    • (2016) Cell , vol.164 , pp. 538-549
    • Haradhvala, N.J.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.