-
1
-
-
0032005792
-
Nucleotide excision repair and photolyase preferentially repair the nontranscribed strand of RNA polymerase III-transcribed genes in Saccharomyces cerevisiae
-
Aboussekhra, A. and Thoma, F. (1998) Nucleotide excision repair and photolyase preferentially repair the nontranscribed strand of RNA polymerase III-transcribed genes in Saccharomyces cerevisiae. Genes Dev., 12, 411-121.
-
(1998)
Genes Dev.
, vol.12
, pp. 411-1121
-
-
Aboussekhra, A.1
Thoma, F.2
-
2
-
-
0018039667
-
A nuclear extract of Xenopus laevis oocytes that accurately transcribes 5S RNA genes
-
Birkenmeier, E.H., Brown, D.D. and Jordan, E. (1978) A nuclear extract of Xenopus laevis oocytes that accurately transcribes 5S RNA genes. Cell, 15, 1077-1086.
-
(1978)
Cell
, vol.15
, pp. 1077-1086
-
-
Birkenmeier, E.H.1
Brown, D.D.2
Jordan, E.3
-
3
-
-
0020039303
-
Stable transcrption complexes of Xenopus 5S RNA genes: A means to maintain the differentiated state
-
Bogenhagen, D.F. Wormington, W.M. and Brown, D.D. (1982) Stable transcrption complexes of Xenopus 5S RNA genes: a means to maintain the differentiated state. Cell, 28, 413-421.
-
(1982)
Cell
, vol.28
, pp. 413-421
-
-
Bogenhagen, D.F.1
Wormington, W.M.2
Brown, D.D.3
-
4
-
-
0003593519
-
-
Marcel Dekker Inc., New York, NY
-
Bohr, V.A. and Okumoto, D.S. (1988) DNA Repair: A Laboratory Manual of Research Procedures. Marcel Dekker Inc., New York, NY, pp. 347-366.
-
(1988)
DNA Repair: A Laboratory Manual of Research Procedures
, pp. 347-366
-
-
Bohr, V.A.1
Okumoto, D.S.2
-
5
-
-
0021905437
-
DNA repair in an active gene: Removal of pyrimidine dimers from the DHFR gene of CHO cells is much more efficient than in the genome overall
-
Bohr, V.A., Smith, C.A., Okumoto, D.S. and Hanawalt, P.C. (1985) DNA repair in an active gene: removal of pyrimidine dimers from the DHFR gene of CHO cells is much more efficient than in the genome overall. Cell, 40, 359-369.
-
(1985)
Cell
, vol.40
, pp. 359-369
-
-
Bohr, V.A.1
Smith, C.A.2
Okumoto, D.S.3
Hanawalt, P.C.4
-
6
-
-
0024049252
-
UV mutagenic photoproducts in Escherichia coli and human cells: A molecular genetics perspective on human skin cancer
-
Brash, D.E. (1988) UV mutagenic photoproducts in Escherichia coli and human cells: a molecular genetics perspective on human skin cancer. Photochem. Photobiol., 48, 59-66.
-
(1988)
Photochem. Photobiol.
, vol.48
, pp. 59-66
-
-
Brash, D.E.1
-
7
-
-
0026700525
-
Photochemistry of nucleic acids in cells
-
Cadet, J., Anselmino, C., Douki, T. and Voituriez, L. (1992) Photochemistry of nucleic acids in cells. J. Photochem. Photobiol., B15, 277-298.
-
(1992)
J. Photochem. Photobiol.
, vol.B15
, pp. 277-298
-
-
Cadet, J.1
Anselmino, C.2
Douki, T.3
Voituriez, L.4
-
8
-
-
0027370604
-
Lack of transcription-coupled repair in mammalian ribosomal RNA genes
-
Christians, F.C. and Hanawalt, P.C. (1993) Lack of transcription-coupled repair in mammalian ribosomal RNA genes. Biochemistry, 32, 10512-10518.
-
(1993)
Biochemistry
, vol.32
, pp. 10512-10518
-
-
Christians, F.C.1
Hanawalt, P.C.2
-
9
-
-
0031014596
-
Lack of gene- and strand-specific DNA repair in RNA polymerase III-transcribed human tRNA genes
-
Dammann, R. and Pfeifer, G.P. (1997) Lack of gene- and strand-specific DNA repair in RNA polymerase III-transcribed human tRNA genes. Mol. Cell. Biol., 17, 219-229.
-
(1997)
Mol. Cell. Biol.
, vol.17
, pp. 219-229
-
-
Dammann, R.1
Pfeifer, G.P.2
-
10
-
-
0026014997
-
High yield purification of active transcription factor IIIA expressed in E.coli
-
Del Rio, S. and Setzer, D.R. (1991) High yield purification of active transcription factor IIIA expressed in E.coli. Nucleic Acids Res., 19, 6197-6203.
-
(1991)
Nucleic Acids Res.
, vol.19
, pp. 6197-6203
-
-
Del Rio, S.1
Setzer, D.R.2
-
11
-
-
0024452308
-
Structure-function studies of the T4 endonuclease V repair enzyme
-
Dodson, M.L. and Lloyd, R.S. (1989) Structure-function studies of the T4 endonuclease V repair enzyme. Mutat. Res., 218, 49-65.
-
(1989)
Mutat. Res.
, vol.218
, pp. 49-65
-
-
Dodson, M.L.1
Lloyd, R.S.2
-
12
-
-
0030013201
-
Relationships between DNA repair and transcription
-
Friedberg, E.C. (1996) Relationships between DNA repair and transcription. Annu. Rev. Biochem., 65, 15-42.
-
(1996)
Annu. Rev. Biochem.
, vol.65
, pp. 15-42
-
-
Friedberg, E.C.1
-
13
-
-
0004228157
-
-
ASM Press, Washington, DC
-
Friedberg, E.C., Walker, G.C. and Siede, W. (1995) DNA Repair and Mutagenesis. ASM Press, Washington, DC.
-
(1995)
DNA Repair and Mutagenesis
-
-
Friedberg, E.C.1
Walker, G.C.2
Siede, W.3
-
14
-
-
0028871666
-
Repair of UV damage in actively transcribed ribosomal genes
-
Fritz, L.K. and Smerdon, M.J. (1995) Repair of UV damage in actively transcribed ribosomal genes. Biochemistry, 34, 13117-13124.
-
(1995)
Biochemistry
, vol.34
, pp. 13117-13124
-
-
Fritz, L.K.1
Smerdon, M.J.2
-
15
-
-
17544363923
-
Strand breaks are repaired efficiently in human ribosomal genes
-
Fritz, L.K., Suquet, C. and Smerdon, M.J. (1996) Strand breaks are repaired efficiently in human ribosomal genes. J. Biol. Chem., 271, 12972-12976.
-
(1996)
J. Biol. Chem.
, vol.271
, pp. 12972-12976
-
-
Fritz, L.K.1
Suquet, C.2
Smerdon, M.J.3
-
16
-
-
0030595338
-
Chromatin assembly coupled to DNA repair: A new role for chromatin assembly factor I
-
Gaillard, P.H., Martini, E.M., Kaufman, P.D., Stillman, B., Moustacchi, E. and Almouzni, G. (1996) Chromatin assembly coupled to DNA repair: a new role for chromatin assembly factor I. Cell, 86, 887-896.
-
(1996)
Cell
, vol.86
, pp. 887-896
-
-
Gaillard, P.H.1
Martini, E.M.2
Kaufman, P.D.3
Stillman, B.4
Moustacchi, E.5
Almouzni, G.6
-
17
-
-
0028270157
-
DNA repair rates mapped along the human PGK-1 gene at nucleotide resolution
-
Gao, S., Drouin, R. and Holmquist, G.P. (1994) DNA repair rates mapped along the human PGK-1 gene at nucleotide resolution. Science, 263, 1438-1440.
-
(1994)
Science
, vol.263
, pp. 1438-1440
-
-
Gao, S.1
Drouin, R.2
Holmquist, G.P.3
-
18
-
-
0002225411
-
Stranded in an active gene
-
Hanawalt, P.C. and Mellon, I. (1993) Stranded in an active gene. Curr. Biol., 3, 67-69.
-
(1993)
Curr. Biol.
, vol.3
, pp. 67-69
-
-
Hanawalt, P.C.1
Mellon, I.2
-
19
-
-
0026760950
-
Structure of the TFIIIA-5S DNA complex
-
Hayes, J.J. and Tullius, T.D. (1992) Structure of the TFIIIA-5S DNA complex. J. Mol. Biol., 227, 407-417.
-
(1992)
J. Mol. Biol.
, vol.227
, pp. 407-417
-
-
Hayes, J.J.1
Tullius, T.D.2
-
20
-
-
0024515156
-
A protein-protein interaction is essential for stable complex formation on a 5S RNA gene
-
Hayes, J., Tullius, T.D. and Wolffe, A.P. (1989) A protein-protein interaction is essential for stable complex formation on a 5S RNA gene. J. Biol. Chem., 264, 6009-6012.
-
(1989)
J. Biol. Chem.
, vol.264
, pp. 6009-6012
-
-
Hayes, J.1
Tullius, T.D.2
Wolffe, A.P.3
-
21
-
-
0025340988
-
DNA repair within nucleosome cores of UV-irradiated human cells
-
Jensen, K.A. and Smerdon, M.J. (1990) DNA repair within nucleosome cores of UV-irradiated human cells. Biochemistry, 29, 4773-4782.
-
(1990)
Biochemistry
, vol.29
, pp. 4773-4782
-
-
Jensen, K.A.1
Smerdon, M.J.2
-
22
-
-
0029338999
-
Contrasting structural impacts induced by cis-syn cyclobutane dimer and (6-4) adduct in DNA duplex decamers: Implication in mutagenesis and repair activity
-
Kim, J.K., Patel, D. and Choi, B.S. (1995) Contrasting structural impacts induced by cis-syn cyclobutane dimer and (6-4) adduct in DNA duplex decamers: implication in mutagenesis and repair activity. Photochem. Photobiol., 62, 44-50.
-
(1995)
Photochem. Photobiol.
, vol.62
, pp. 44-50
-
-
Kim, J.K.1
Patel, D.2
Choi, B.S.3
-
23
-
-
0030815234
-
Strand-specific modulation of UV photoproducts in 5S rDNA by TFIIIA binding and their effect on TFIIIA complex formation
-
Liu, X., Conconi, A. and Smerdon, M.J. (1997) Strand-specific modulation of UV photoproducts in 5S rDNA by TFIIIA binding and their effect on TFIIIA complex formation. Biochemistry, 36, 13710-13717.
-
(1997)
Biochemistry
, vol.36
, pp. 13710-13717
-
-
Liu, X.1
Conconi, A.2
Smerdon, M.J.3
-
24
-
-
0030960760
-
DNA damage can alter the stability of nucleosomes: Effects are dependent on damage type
-
Mann, D.B., Springer, D.L. and Smerdon, M.J. (1997) DNA damage can alter the stability of nucleosomes: effects are dependent on damage type. Proc. Nati Acad. Sci. USA, 94, 2215-2220.
-
(1997)
Proc. Nati Acad. Sci. USA
, vol.94
, pp. 2215-2220
-
-
Mann, D.B.1
Springer, D.L.2
Smerdon, M.J.3
-
25
-
-
0024426244
-
Induction of the Escherichia coli lactose operon selectively increases repair of its transcribed DNA strand
-
Mellon, I. and Hanawalt, P.C. (1989) Induction of the Escherichia coli lactose operon selectively increases repair of its transcribed DNA strand. Nature, 342, 95-98.
-
(1989)
Nature
, vol.342
, pp. 95-98
-
-
Mellon, I.1
Hanawalt, P.C.2
-
26
-
-
0024675824
-
The biology of the (6-4) photoproduct
-
Mitchell, D.L. and Nairn, R.S. (1989) The biology of the (6-4) photoproduct. Photochem. Photobiol., 49, 805-819.
-
(1989)
Photochem. Photobiol.
, vol.49
, pp. 805-819
-
-
Mitchell, D.L.1
Nairn, R.S.2
-
27
-
-
0032539846
-
Differing roles for zinc fingers in DNA recognition: Structure of a six-finger transcription factor IIIA complex
-
Nolte, R.T., Conlin, R.M., Harrison, S.C. and Brown, R.S. (1998) Differing roles for zinc fingers in DNA recognition: structure of a six-finger transcription factor IIIA complex. Proc. Natl Acad. Sci. USA, 95, 2938-2943.
-
(1998)
Proc. Natl Acad. Sci. USA
, vol.95
, pp. 2938-2943
-
-
Nolte, R.T.1
Conlin, R.M.2
Harrison, S.C.3
Brown, R.S.4
-
28
-
-
0029884675
-
DNA polymerases α and β are required for DNA repair in an efficient nuclear extract from Xenopus oocytes
-
Oda, N., Saxena, J.K., Jenkins, T.M., Prasad, R., Wilson, S.H. and Ackerman, E.J. (1996) DNA polymerases α and β are required for DNA repair in an efficient nuclear extract from Xenopus oocytes. J. Biol. Chem., 271, 13816-13820.
-
(1996)
J. Biol. Chem.
, vol.271
, pp. 13816-13820
-
-
Oda, N.1
Saxena, J.K.2
Jenkins, T.M.3
Prasad, R.4
Wilson, S.H.5
Ackerman, E.J.6
-
29
-
-
0025008425
-
Characterization of the equilibrium binding of Xenopus transcription factor IIIA to the 5S RNA gene
-
Romaniuk, P.J. (1990) Characterization of the equilibrium binding of Xenopus transcription factor IIIA to the 5S RNA gene. J. Biol. Chem., 265, 17593-17600.
-
(1990)
J. Biol. Chem.
, vol.265
, pp. 17593-17600
-
-
Romaniuk, P.J.1
-
30
-
-
0029892790
-
DNA excision repair
-
Sancar, A. (1996) DNA excision repair. Annu. Rev. Biochem., 65, 43-81.
-
(1996)
Annu. Rev. Biochem.
, vol.65
, pp. 43-81
-
-
Sancar, A.1
-
31
-
-
0025598197
-
Excision repair of UV-damaged plasmid DNA in Xenopus oocytes is mediated by DNA polymerase α (and/or δ)
-
Saxena, J.K., Hays, J.B. and Ackerman, E.J. (1990) Excision repair of UV-damaged plasmid DNA in Xenopus oocytes is mediated by DNA polymerase α (and/or δ). Nucleic Acids Res., 18, 7425-7432.
-
(1990)
Nucleic Acids Res.
, vol.18
, pp. 7425-7432
-
-
Saxena, J.K.1
Hays, J.B.2
Ackerman, E.J.3
-
32
-
-
0025610725
-
Transcription preferentially inhibits nucleotide excision repair of the template DNA strand in vitro
-
Selby, C.P. and Sancar, A. (1990) Transcription preferentially inhibits nucleotide excision repair of the template DNA strand in vitro. J. Biol. Chem., 265, 21330-21336.
-
(1990)
J. Biol. Chem.
, vol.265
, pp. 21330-21336
-
-
Selby, C.P.1
Sancar, A.2
-
33
-
-
0023135193
-
Photofootprinting in vivo detects transcription-dependent changes in yeast TATA boxes
-
Selleck, S.B. and Majors, J. (1987) Photofootprinting in vivo detects transcription-dependent changes in yeast TATA boxes. Nature, 325, 173-177.
-
(1987)
Nature
, vol.325
, pp. 173-177
-
-
Selleck, S.B.1
Majors, J.2
-
34
-
-
0025316080
-
Site-specific DNA repair at the nucleosome level in a yeast minichromosome
-
Smerdon, M.J. and Thoma, F. (1990) Site-specific DNA repair at the nucleosome level in a yeast minichromosome. Cell, 61, 675-684.
-
(1990)
Cell
, vol.61
, pp. 675-684
-
-
Smerdon, M.J.1
Thoma, F.2
-
35
-
-
0032601589
-
Modulation of DNA damage and DNA repair in chromatin
-
Moldave, K. (ed.), Academic Press, San Diego, CA
-
Smerdon, M.J. and Conconi, A. (1999) Modulation of DNA damage and DNA repair in chromatin. In Moldave, K. (ed.), Progress in Nucleic Acids Research and Molecular Biology. Vol. 62. Academic Press, San Diego, CA, pp. 227-255.
-
(1999)
Progress in Nucleic Acids Research and Molecular Biology
, vol.62
, pp. 227-255
-
-
Smerdon, M.J.1
Conconi, A.2
-
36
-
-
0029774202
-
Inhibition of transcription factor binding by ultraviolet-induced pyrimidine dimers
-
Tommasi, S., Swiderski, P.M., Tu, Y., Kaplan, B.E. and Pfeifer, G.P. (1996) Inhibition of transcription factor binding by ultraviolet-induced pyrimidine dimers. Biochemistry, 35, 15693-15703.
-
(1996)
Biochemistry
, vol.35
, pp. 15693-15703
-
-
Tommasi, S.1
Swiderski, P.M.2
Tu, Y.3
Kaplan, B.E.4
Pfeifer, G.P.5
-
37
-
-
0029058984
-
UV-light as a footprinting agent: Modulation of UV-induced DNA damage by transcription factors bound at the promoters of three human genes
-
Tornaletti, S. and Pfeifer, G.P. (1995) UV-light as a footprinting agent: modulation of UV-induced DNA damage by transcription factors bound at the promoters of three human genes. J. Mol. Biol., 249, 714-728.
-
(1995)
J. Mol. Biol.
, vol.249
, pp. 714-728
-
-
Tornaletti, S.1
Pfeifer, G.P.2
-
38
-
-
0030024358
-
DNA repair domains within a human gene: Selective repair of sequences near the transcription initiation site
-
Tu, Y., Tornaletti, S. and Pfeifer, G.P. (1996) DNA repair domains within a human gene: selective repair of sequences near the transcription initiation site. EMBO J., 15, 675-683.
-
(1996)
EMBO J.
, vol.15
, pp. 675-683
-
-
Tu, Y.1
Tornaletti, S.2
Pfeifer, G.P.3
-
39
-
-
0029670373
-
Repair of rDNA in Saccharomyces cerevisiae: RAD4-independent strand-specific nucleotide excision repair of RNA polymerase I transcribed genes
-
Verhage, R.A., van de Putte, P. and Brouwer, J. (1996) Repair of rDNA in Saccharomyces cerevisiae: RAD4-independent strand-specific nucleotide excision repair of RNA polymerase I transcribed genes. Nucleic Acids Res., 24, 1020-1025.
-
(1996)
Nucleic Acids Res.
, vol.24
, pp. 1020-1025
-
-
Verhage, R.A.1
Van De Putte, P.2
Brouwer, J.3
-
40
-
-
0023867502
-
Selective visualization of gene structure with ultraviolet light
-
Wang, Z. and Becker, M.M. (1988) Selective visualization of gene structure with ultraviolet light. Proc. Natl Acad. Sci. USA, 85, 654-658.
-
(1988)
Proc. Natl Acad. Sci. USA
, vol.85
, pp. 654-658
-
-
Wang, Z.1
Becker, M.M.2
-
41
-
-
0023987647
-
Transcription factor TFIIIC can regulate differential Xenopus 5S RNA gene transcription in vitro
-
Wolffe, A.P. (1988) Transcription factor TFIIIC can regulate differential Xenopus 5S RNA gene transcription in vitro. EMBO J., 7, 1071-1079.
-
(1988)
EMBO J.
, vol.7
, pp. 1071-1079
-
-
Wolffe, A.P.1
-
42
-
-
0028064887
-
The role of transcription factors, chromatin structure and DNA replication in 5S RNA gene regulation
-
Wolffe, A.P. (1994) The role of transcription factors, chromatin structure and DNA replication in 5S RNA gene regulation. J. Cell Sci., 107, 2055-2063.
-
(1994)
J. Cell Sci.
, vol.107
, pp. 2055-2063
-
-
Wolffe, A.P.1
-
44
-
-
0023026843
-
DNA replication in vitro erases a Xenopus 5S RNA gene transcription complex
-
Wolffe, A.P. and Brown, D.D. (1986) DNA replication in vitro erases a Xenopus 5S RNA gene transcription complex. Cell, 47, 217-227.
-
(1986)
Cell
, vol.47
, pp. 217-227
-
-
Wolffe, A.P.1
Brown, D.D.2
-
45
-
-
0022458166
-
A bacteriophage RNA polymerase transcribes through a Xenopus 5S RNA gene transcription complex without disrupting it
-
Wolffe, A.P., Jordan, E. and Brown, D.D. (1986) A bacteriophage RNA polymerase transcribes through a Xenopus 5S RNA gene transcription complex without disrupting it. Cell, 44, 381-389.
-
(1986)
Cell
, vol.44
, pp. 381-389
-
-
Wolffe, A.P.1
Jordan, E.2
Brown, D.D.3
|