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Volumn 9, Issue 1, 2016, Pages

A complete annotation of the chromosomes of the cellulase producer Trichoderma reesei provides insights in gene clusters, their expression and reveals genes required for fitness

Author keywords

Cellulases; Chromosomes; Gene clusters; Gene silencing; Proteases; Siderophores; T. reesei; Telomeres

Indexed keywords

ALKYLATION; AMINO ACIDS; CHROMOSOMES; ENCODING (SYMBOLS); ENZYMES; GENE ENCODING; GENES; GENETIC ENGINEERING; HEALTH; KETONES; PLANTS (BOTANY); PROTEINS; TRANSCRIPTION;

EID: 84963878389     PISSN: 17546834     EISSN: None     Source Type: Journal    
DOI: 10.1186/s13068-016-0488-z     Document Type: Article
Times cited : (35)

References (86)
  • 1
    • 1842427830 scopus 로고    scopus 로고
    • The evolutionary dynamics of eukaryotic gene order
    • 1:CAS:528:DC%2BD2cXjtVartLg%3D Hurst L, Pal C, Lercher MJ. The evolutionary dynamics of eukaryotic gene order. Nat Rev Genet. 2004;5:299-310
    • Hurst L, Pal C, Lercher MJ. The evolutionary dynamics of eukaryotic gene order. Nat Rev Genet. 2004;5:299-310.
    • (2004) Nat Rev Genet , vol.5 , pp. 299-310
    • Hurst, L.1    Pal, C.2    Lercher, M.J.3
  • 2
    • 7444260237 scopus 로고    scopus 로고
    • Gene order and dynamic domains
    • 1:CAS:528:DC%2BD2cXos1Kqtb4%3D Kosak ST, Groudine M. Gene order and dynamic domains. Science. 2004;306:644-7
    • Kosak ST, Groudine M. Gene order and dynamic domains. Science. 2004;306:644-7.
    • (2004) Science , vol.306 , pp. 644-647
    • Kosak, S.T.1    Groudine, M.2
  • 3
    • 39149119250 scopus 로고    scopus 로고
    • Coexpression, coregulation, and cofunctionality of neighboring genes in eukaryotic genomes
    • Michalak P. Coexpression, coregulation, and cofunctionality of neighboring genes in eukaryotic genomes. Genomics. 2008;3:243-8
    • Michalak P. Coexpression, coregulation, and cofunctionality of neighboring genes in eukaryotic genomes. Genomics. 2008;3:243-8.
    • (2008) Genomics , vol.3 , pp. 243-248
    • Michalak, P.1
  • 4
    • 70849118522 scopus 로고    scopus 로고
    • Operons
    • 1:CAS:528:DC%2BD1MXhtl2ktbnI Osbourn AE, Field B. Operons. Cell Mol Life Sci. 2009;66:3755-75
    • Osbourn AE, Field B. Operons. Cell Mol Life Sci. 2009;66:3755-75.
    • (2009) Cell Mol Life Sci , vol.66 , pp. 3755-3775
    • Osbourn, A.E.1    Field, B.2
  • 5
    • 84963803750 scopus 로고    scopus 로고
    • Mining the genome of the biotrophic fungal pathogen Ustilago maydis
    • Ka die;mper J, Kahmann R, Bo die;lker M, Ma L-J, Brefort T, Mining the genome of the biotrophic fungal pathogen Ustilago maydis. Nature. 2006;444:S1-2
    • Kämper J, Kahmann R, Bölker M, Ma L-J, Brefort T, et al. Mining the genome of the biotrophic fungal pathogen Ustilago maydis. Nature. 2006;444:S1-2.
    • (2006) Nature , vol.444 , pp. S1-S2
    • Kämper, J.1    Kahmann, R.2    Bölker, M.3    Ma, L.-J.4    Brefort, T.5
  • 6
    • 0141854009 scopus 로고    scopus 로고
    • The human transcriptome map reveals extremes in gene density, intron length, GC content, and repeat pattern for domains of highly and weakly expressed genes
    • 1:CAS:528:DC%2BD3sXnslKhtrc%3D Versteeg R, van Schaik BD, van Batenburg MF, Roos M, Monajemi R, The human transcriptome map reveals extremes in gene density, intron length, GC content, and repeat pattern for domains of highly and weakly expressed genes. Genome Res. 2003;13:1998-2004
    • Versteeg R, van Schaik BD, van Batenburg MF, Roos M, Monajemi R, et al. The human transcriptome map reveals extremes in gene density, intron length, GC content, and repeat pattern for domains of highly and weakly expressed genes. Genome Res. 2003;13:1998-2004.
    • (2003) Genome Res , vol.13 , pp. 1998-2004
    • Versteeg, R.1    Van Schaik, B.D.2    Van Batenburg, M.F.3    Roos, M.4    Monajemi, R.5
  • 7
    • 77957891169 scopus 로고    scopus 로고
    • Coordinated expression domains in mammalian genomes
    • Woo YH, Walker M, Churchill GA. Coordinated expression domains in mammalian genomes. PLoS One. 2010;5:e12158
    • Woo YH, Walker M, Churchill GA. Coordinated expression domains in mammalian genomes. PLoS One. 2010;5:e12158.
    • (2010) PLoS One , vol.5 , pp. e12158
    • Woo, Y.H.1    Walker, M.2    Churchill, G.A.3
  • 8
    • 0032112293 scopus 로고    scopus 로고
    • A genome-wide transcriptional analysis of the mitotic cell cycle
    • 1:CAS:528:DyaK1cXltVektLw%3D Cho RJ, Campbell MJ, Winzeler EA, Steinmetz L, Conway A, A genome-wide transcriptional analysis of the mitotic cell cycle. Mol Cell. 1998;2:65-73
    • Cho RJ, Campbell MJ, Winzeler EA, Steinmetz L, Conway A, et al. A genome-wide transcriptional analysis of the mitotic cell cycle. Mol Cell. 1998;2:65-73.
    • (1998) Mol Cell , vol.2 , pp. 65-73
    • Cho, R.J.1    Campbell, M.J.2    Winzeler, E.A.3    Steinmetz, L.4    Conway, A.5
  • 9
    • 0033780450 scopus 로고    scopus 로고
    • A computational analysis of whole-genome expression data reveals chromosomal domains of gene expression
    • 1:CAS:528:DC%2BD3cXntlGms70%3D Cohen BA, Mitra RD, Hughes JD, Church GM. A computational analysis of whole-genome expression data reveals chromosomal domains of gene expression. Nat Genet. 2000;26:183-6
    • Cohen BA, Mitra RD, Hughes JD, Church GM. A computational analysis of whole-genome expression data reveals chromosomal domains of gene expression. Nat Genet. 2000;26:183-6.
    • (2000) Nat Genet , vol.26 , pp. 183-186
    • Cohen, B.A.1    Mitra, R.D.2    Hughes, J.D.3    Church, G.M.4
  • 10
    • 65949116565 scopus 로고    scopus 로고
    • Gene clusters, molecular evolution and disease: A speculation
    • 1:CAS:528:DC%2BD1MXks1Cgsrk%3D Elizondo LI, Jafar-Nejad P, Clewing JM, Boerkoel CF. Gene clusters, molecular evolution and disease: a speculation. Curr Genomics. 2009;10:64-75
    • Elizondo LI, Jafar-Nejad P, Clewing JM, Boerkoel CF. Gene clusters, molecular evolution and disease: a speculation. Curr Genomics. 2009;10:64-75.
    • (2009) Curr Genomics , vol.10 , pp. 64-75
    • Elizondo, L.I.1    Jafar-Nejad, P.2    Clewing, J.M.3    Boerkoel, C.F.4
  • 11
    • 0037194732 scopus 로고    scopus 로고
    • Chromosomal clustering of muscle-expressed genes in Caenorhabditis elegans
    • 1:CAS:528:DC%2BD38XmsFWkt78%3D Roy PJ, Stuart JM, Lund J, Kim SK. Chromosomal clustering of muscle-expressed genes in Caenorhabditis elegans. Nature. 2002;418:975-9
    • Roy PJ, Stuart JM, Lund J, Kim SK. Chromosomal clustering of muscle-expressed genes in Caenorhabditis elegans. Nature. 2002;418:975-9.
    • (2002) Nature , vol.418 , pp. 975-979
    • Roy, P.J.1    Stuart, J.M.2    Lund, J.3    Kim, S.K.4
  • 12
    • 0017833637 scopus 로고
    • A tandemly repeated sequence at the termini of the extrachromosomal ribosomal RNA genes in Tetrahymena
    • 1:CAS:528:DyaE1cXktVejsbc%3D Blackburn AM, Gall JG. A tandemly repeated sequence at the termini of the extrachromosomal ribosomal RNA genes in Tetrahymena. J Mol Biol. 1978;120:33-53
    • Blackburn AM, Gall JG. A tandemly repeated sequence at the termini of the extrachromosomal ribosomal RNA genes in Tetrahymena. J Mol Biol. 1978;120:33-53.
    • (1978) J Mol Biol , vol.120 , pp. 33-53
    • Blackburn, A.M.1    Gall, J.G.2
  • 13
    • 0030789715 scopus 로고    scopus 로고
    • Incidence of SUC-RTM telomeric repeated genes in brewing and wild wine strains of Saccharomyces
    • 1:CAS:528:DyaK2sXkslGgtLc%3D Denayrolles M, de Villechenon EP, Lonvaud-Funel A, Aigle M. Incidence of SUC-RTM telomeric repeated genes in brewing and wild wine strains of Saccharomyces. Curr Genet. 1997;31:457-61
    • Denayrolles M, de Villechenon EP, Lonvaud-Funel A, Aigle M. Incidence of SUC-RTM telomeric repeated genes in brewing and wild wine strains of Saccharomyces. Curr Genet. 1997;31:457-61.
    • (1997) Curr Genet , vol.31 , pp. 457-461
    • Denayrolles, M.1    De Villechenon, E.P.2    Lonvaud-Funel, A.3    Aigle, M.4
  • 14
    • 0037245489 scopus 로고    scopus 로고
    • Why are parasite contingency genes often associated with telomeres?
    • 1:CAS:528:DC%2BD3sXlt1yjtA%3D%3D Barry JD, Ginger ML, Burton P, McCulloch R. Why are parasite contingency genes often associated with telomeres? Int J Parasitol. 2003;33:29-45
    • Barry JD, Ginger ML, Burton P, McCulloch R. Why are parasite contingency genes often associated with telomeres? Int J Parasitol. 2003;33:29-45.
    • (2003) Int J Parasitol , vol.33 , pp. 29-45
    • Barry, J.D.1    Ginger, M.L.2    Burton, P.3    McCulloch, R.4
  • 15
    • 0031038587 scopus 로고    scopus 로고
    • Expressed var genes are found in Plasmodium falciparum subtelomeric regions
    • 1:CAS:528:DyaK2sXmvVahsA%3D%3D Hernandez-Rivas R, Mattei D, Sterkers Y, Peterson DS, Wellems TE, Expressed var genes are found in Plasmodium falciparum subtelomeric regions. Mol Cell Biol. 1997;17:604-11
    • Hernandez-Rivas R, Mattei D, Sterkers Y, Peterson DS, Wellems TE, et al. Expressed var genes are found in Plasmodium falciparum subtelomeric regions. Mol Cell Biol. 1997;17:604-11.
    • (1997) Mol Cell Biol , vol.17 , pp. 604-611
    • Hernandez-Rivas, R.1    Mattei, D.2    Sterkers, Y.3    Peterson, D.S.4    Wellems, T.E.5
  • 16
    • 25444471509 scopus 로고    scopus 로고
    • Gene arrays at Pneumocystis carinii telomeres
    • Keely SP, Renauld H, Wakefield AE, Cushion MT, Smulian AG, Gene arrays at Pneumocystis carinii telomeres. Genetics. 2005;105:1589-600
    • Keely SP, Renauld H, Wakefield AE, Cushion MT, Smulian AG, et al. Gene arrays at Pneumocystis carinii telomeres. Genetics. 2005;105:1589-600.
    • (2005) Genetics , vol.105 , pp. 1589-1600
    • Keely, S.P.1    Renauld, H.2    Wakefield, A.E.3    Cushion, M.T.4    Smulian, A.G.5
  • 17
    • 84861952937 scopus 로고    scopus 로고
    • Anatomy and evolution of telomeric and subtelomeric regions in the human protozoan parasite Trypanosoma cruzi
    • Moraes Barros RR, Marini MM, Anto circ;nio CR, Cortez DR, Miyake AM, Lima FM, Ruiz JC, Bartholomeu DC, Chiurillo MA, Ramirez JL, da Silveira JF. Anatomy and evolution of telomeric and subtelomeric regions in the human protozoan parasite Trypanosoma cruzi. BMC Genomics. 2012;13:229
    • Moraes Barros RR, Marini MM, Antônio CR, Cortez DR, Miyake AM, Lima FM, Ruiz JC, Bartholomeu DC, Chiurillo MA, Ramirez JL, da Silveira JF. Anatomy and evolution of telomeric and subtelomeric regions in the human protozoan parasite Trypanosoma cruzi. BMC Genomics. 2012;13:229.
    • (2012) BMC Genomics , vol.13 , pp. 229
    • Moraes Barros, R.R.1    Marini, M.M.2    Antônio, C.R.3    Cortez, D.R.4    Miyake, A.M.5    Lima, F.M.6    Ruiz, J.C.7    Bartholomeu, D.C.8    Chiurillo, M.A.9    Ramirez, J.L.10    Da Silveira, J.F.11
  • 18
    • 84923914516 scopus 로고    scopus 로고
    • DNA double-strand breaks and telomeres play important roles in Trypanosoma brucei antigenic variation
    • 1:CAS:528:DC%2BC2MXkvV2gs70%3D Li B. DNA double-strand breaks and telomeres play important roles in Trypanosoma brucei antigenic variation. Eukaryot Cell. 2015;14:196-205
    • Li B. DNA double-strand breaks and telomeres play important roles in Trypanosoma brucei antigenic variation. Eukaryot Cell. 2015;14:196-205.
    • (2015) Eukaryot Cell , vol.14 , pp. 196-205
    • Li, B.1
  • 19
    • 26844506268 scopus 로고    scopus 로고
    • Regulation of antigen gene expression in Trypanosoma brucei
    • 1:CAS:528:DC%2BD2MXhtFeiu7vL Pays E. Regulation of antigen gene expression in Trypanosoma brucei. Trends Parasitol. 2005;21:517-20
    • Pays E. Regulation of antigen gene expression in Trypanosoma brucei. Trends Parasitol. 2005;21:517-20.
    • (2005) Trends Parasitol , vol.21 , pp. 517-520
    • Pays, E.1
  • 20
    • 84872184440 scopus 로고    scopus 로고
    • Systems biological approaches towards understanding cellulase production by Trichoderma reesei
    • 1:CAS:528:DC%2BC38XhtVymsrbN Kubicek CP. Systems biological approaches towards understanding cellulase production by Trichoderma reesei. J Biotechnol. 2013;163:133-42
    • Kubicek CP. Systems biological approaches towards understanding cellulase production by Trichoderma reesei. J Biotechnol. 2013;163:133-42.
    • (2013) J Biotechnol , vol.163 , pp. 133-142
    • Kubicek, C.P.1
  • 21
    • 84855228527 scopus 로고    scopus 로고
    • Trichoderma reesei RUT-C30-thirty years of strain improvement
    • 1:CAS:528:DC%2BC38XitVKmsr8%3D Peterson R, Nevalainen H. Trichoderma reesei RUT-C30-thirty years of strain improvement. Microbiology. 2012;158:58-68
    • Peterson R, Nevalainen H. Trichoderma reesei RUT-C30-thirty years of strain improvement. Microbiology. 2012;158:58-68.
    • (2012) Microbiology , vol.158 , pp. 58-68
    • Peterson, R.1    Nevalainen, H.2
  • 22
    • 43449098828 scopus 로고    scopus 로고
    • Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn. Hypocrea jecorina)
    • 1:CAS:528:DC%2BD1cXls12jurg%3D Martinez D, Berka RM, Henrissat B, Saloheimo M, Arvas M, Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn. Hypocrea jecorina). Nat Biotechnol. 2008;26:553-60
    • Martinez D, Berka RM, Henrissat B, Saloheimo M, Arvas M, et al. Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn. Hypocrea jecorina). Nat Biotechnol. 2008;26:553-60.
    • (2008) Nat Biotechnol , vol.26 , pp. 553-560
    • Martinez, D.1    Berka, R.M.2    Henrissat, B.3    Saloheimo, M.4    Arvas, M.5
  • 23
    • 84961282063 scopus 로고    scopus 로고
    • Familiar stranger: Ecological genomics of the model saprotroph and industrial enzyme producer Trichoderma reesei breaks the stereotypes
    • Druzhinina IS, Kubicek CP. Familiar stranger: ecological genomics of the model saprotroph and industrial enzyme producer Trichoderma reesei breaks the stereotypes. Adv Appl Microbiol. 2016. doi: 10.1016/bs.aambs.2016.02.001.
    • (2016) Adv Appl Microbiol
    • Druzhinina, I.S.1    Kubicek, C.P.2
  • 25
    • 83655197847 scopus 로고    scopus 로고
    • Correlation of gene expression and protein production rate - A system wide study
    • 1:CAS:528:DC%2BC38XivVWitrc%3D Arvas M, Pakula T, Smit B, Rautio J, Koivistoinen H, Correlation of gene expression and protein production rate - a system wide study. BMC Genom. 2011;12:616
    • Arvas M, Pakula T, Smit B, Rautio J, Koivistoinen H, et al. Correlation of gene expression and protein production rate - a system wide study. BMC Genom. 2011;12:616.
    • (2011) BMC Genom , vol.12 , pp. 616
    • Arvas, M.1    Pakula, T.2    Smit, B.3    Rautio, J.4    Koivistoinen, H.5
  • 26
    • 84871398239 scopus 로고    scopus 로고
    • Re-annotation of the CAZy genes of Trichoderma reesei and transcription in the presence of lignocellulosic substrates
    • Ha die;kkinen M, Arvas M, Oja M, Aro N, Penttila die; M, Re-annotation of the CAZy genes of Trichoderma reesei and transcription in the presence of lignocellulosic substrates. Microb Cell Fact. 2012;11:134
    • Häkkinen M, Arvas M, Oja M, Aro N, Penttilä M, et al. Re-annotation of the CAZy genes of Trichoderma reesei and transcription in the presence of lignocellulosic substrates. Microb Cell Fact. 2012;11:134.
    • (2012) Microb Cell Fact , vol.11 , pp. 134
    • Häkkinen, M.1    Arvas, M.2    Oja, M.3    Aro, N.4    Penttilä, M.5
  • 27
    • 84894288311 scopus 로고    scopus 로고
    • Screening of candidate regulators for cellulase and hemicellulase production in Trichoderma reesei and identification of a factor essential for cellulase production
    • Ha die;kkinen M, Valkonen MJ, Westerholm-Parvinen A, Aro N, Arvas M. Screening of candidate regulators for cellulase and hemicellulase production in Trichoderma reesei and identification of a factor essential for cellulase production. Biotechnol Biofuels. 2014;7:14
    • Häkkinen M, Valkonen MJ, Westerholm-Parvinen A, Aro N, Arvas M. Screening of candidate regulators for cellulase and hemicellulase production in Trichoderma reesei and identification of a factor essential for cellulase production. Biotechnol Biofuels. 2014;7:14.
    • (2014) Biotechnol Biofuels , vol.7 , pp. 14
    • Häkkinen, M.1    Valkonen, M.J.2    Westerholm-Parvinen, A.3    Aro, N.4    Arvas, M.5
  • 28
    • 0026744443 scopus 로고
    • Chromosomal and genetic analysis of the electrophoretic karyotype of Trichoderma reesei: Mapping of the cellulase and xylanase genes
    • 1:CAS:528:DyaK38XlvVGqs7k%3D Carter GL, Allison D, Rey MW, Dunn-Coleman NS. Chromosomal and genetic analysis of the electrophoretic karyotype of Trichoderma reesei: mapping of the cellulase and xylanase genes. Mol Microbiol. 1992;6:2167-74
    • Carter GL, Allison D, Rey MW, Dunn-Coleman NS. Chromosomal and genetic analysis of the electrophoretic karyotype of Trichoderma reesei: mapping of the cellulase and xylanase genes. Mol Microbiol. 1992;6:2167-74.
    • (1992) Mol Microbiol , vol.6 , pp. 2167-2174
    • Carter, G.L.1    Allison, D.2    Rey, M.W.3    Dunn-Coleman, N.S.4
  • 29
    • 0026516542 scopus 로고
    • Electrophoretic karyotyping of wild-type and mutant Trichoderma longibrachiatum (reesei) strains
    • Ma die;ntyla die; AL, Rossi KH, Vanhanen SA, Penttila die; ME, Suominen PL, Electrophoretic karyotyping of wild-type and mutant Trichoderma longibrachiatum (reesei) strains. Curr Genet. 1992;21:471-7
    • Mäntylä AL, Rossi KH, Vanhanen SA, Penttilä ME, Suominen PL, et al. Electrophoretic karyotyping of wild-type and mutant Trichoderma longibrachiatum (reesei) strains. Curr Genet. 1992;21:471-7.
    • (1992) Curr Genet , vol.21 , pp. 471-477
    • Mäntylä, A.L.1    Rossi, K.H.2    Vanhanen, S.A.3    Penttilä, M.E.4    Suominen, P.L.5
  • 30
    • 84922698599 scopus 로고    scopus 로고
    • High-quality genome (re)assembly using chromosomal contact data
    • 1:CAS:528:DC%2BC2MXktFegu7o%3D Marie-Nelly H, Marbouty M, Cournac A, Flot JF, Liti G, High-quality genome (re)assembly using chromosomal contact data. Nat Commun. 2014;5:5695
    • Marie-Nelly H, Marbouty M, Cournac A, Flot JF, Liti G, et al. High-quality genome (re)assembly using chromosomal contact data. Nat Commun. 2014;5:5695.
    • (2014) Nat Commun , vol.5 , pp. 5695
    • Marie-Nelly, H.1    Marbouty, M.2    Cournac, A.3    Flot, J.F.4    Liti, G.5
  • 31
    • 85040327765 scopus 로고    scopus 로고
    • Aspergillus nidulans linkage map and genome sequence: Closing gaps and adding telomeres
    • Boca Raton CRC Press G Goldman S Osmani Clutterbuck J, Farman ML. Aspergillus nidulans linkage map and genome sequence: closing gaps and adding telomeres. In: Goldman G, Osmani S, editors. The Aspergilli: Genomics, Medicine, Biotechnology and Research Methods. Boca Raton: CRC Press; 2007. p. 57-73
    • Clutterbuck J, Farman ML. Aspergillus nidulans linkage map and genome sequence: closing gaps and adding telomeres. In: Goldman G, Osmani S, editors. The Aspergilli: Genomics, Medicine, Biotechnology and Research Methods. Boca Raton: CRC Press; 2007. p. 57-73.
    • (2007) The Aspergilli: Genomics, Medicine, Biotechnology and Research Methods , pp. 57-73
    • Clutterbuck, J.1    Farman, M.L.2
  • 32
    • 0036741619 scopus 로고    scopus 로고
    • Evolution and organization of a highly dynamic, subtelomeric helicase gene family in the rice blast fungus Magnaporthe grisea
    • 1:CAS:528:DC%2BD38Xotl2gsr0%3D Gao W, Khang CH, Park SY, Lee YH, Kang SK. Evolution and organization of a highly dynamic, subtelomeric helicase gene family in the rice blast fungus Magnaporthe grisea. Genetics. 2002;162:103-12
    • Gao W, Khang CH, Park SY, Lee YH, Kang SK. Evolution and organization of a highly dynamic, subtelomeric helicase gene family in the rice blast fungus Magnaporthe grisea. Genetics. 2002;162:103-12.
    • (2002) Genetics , vol.162 , pp. 103-112
    • Gao, W.1    Khang, C.H.2    Park, S.Y.3    Lee, Y.H.4    Kang, S.K.5
  • 33
    • 33750219521 scopus 로고    scopus 로고
    • Organization of chromosome ends in the rice blast fungus, Magnaporthe oryzae
    • 1:CAS:528:DC%2BD28XhtFeisLfO Rehmeyer C, Li W, Kusaba M, Kim YS, Brown D, Staben C, Dean R, Farman M. Organization of chromosome ends in the rice blast fungus, Magnaporthe oryzae. Nucleic Acids Res. 2006;34:4685-701
    • Rehmeyer C, Li W, Kusaba M, Kim YS, Brown D, Staben C, Dean R, Farman M. Organization of chromosome ends in the rice blast fungus, Magnaporthe oryzae. Nucleic Acids Res. 2006;34:4685-701.
    • (2006) Nucleic Acids Res , vol.34 , pp. 4685-4701
    • Rehmeyer, C.1    Li, W.2    Kusaba, M.3    Kim, Y.S.4    Brown, D.5    Staben, C.6    Dean, R.7    Farman, M.8
  • 34
    • 62549126963 scopus 로고    scopus 로고
    • Characterization of chromosome ends in the filamentous fungus Neurospora crassa
    • 1:CAS:528:DC%2BD1MXksFemt70%3D Wu C, Kim YS, Smith KM, Li W, Hood HM, Characterization of chromosome ends in the filamentous fungus Neurospora crassa. Genetics. 2009;181:1129-45
    • Wu C, Kim YS, Smith KM, Li W, Hood HM, et al. Characterization of chromosome ends in the filamentous fungus Neurospora crassa. Genetics. 2009;181:1129-45.
    • (2009) Genetics , vol.181 , pp. 1129-1145
    • Wu, C.1    Kim, Y.S.2    Smith, K.M.3    Li, W.4    Hood, H.M.5
  • 36
    • 84903698653 scopus 로고    scopus 로고
    • A brief review: The Z curve theory and its application to genome analysis
    • 1:CAS:528:DC%2BC2cXnt1emu7o%3D Zhang R, Zhang CT. A brief review: the Z curve theory and its application to genome analysis. Curr Genomics. 2014;15:78-94
    • Zhang R, Zhang CT. A brief review: the Z curve theory and its application to genome analysis. Curr Genomics. 2014;15:78-94.
    • (2014) Curr Genomics , vol.15 , pp. 78-94
    • Zhang, R.1    Zhang, C.T.2
  • 37
    • 25844517894 scopus 로고    scopus 로고
    • Monomorphic subtelomeric DNA in the filamentous fungus, Metarhizium anisopliae, contains a RecQ helicase-like gene
    • 1:CAS:528:DC%2BD2MXhtVGntrrM Inglis PW, Rigden DJ, Mello LV, Louis EJ, Valadares-Inglis MC. Monomorphic subtelomeric DNA in the filamentous fungus, Metarhizium anisopliae, contains a RecQ helicase-like gene. Mol Genet Genomics. 2005;274:79-90
    • Inglis PW, Rigden DJ, Mello LV, Louis EJ, Valadares-Inglis MC. Monomorphic subtelomeric DNA in the filamentous fungus, Metarhizium anisopliae, contains a RecQ helicase-like gene. Mol Genet Genomics. 2005;274:79-90.
    • (2005) Mol Genet Genomics , vol.274 , pp. 79-90
    • Inglis, P.W.1    Rigden, D.J.2    Mello, L.V.3    Louis, E.J.4    Valadares-Inglis, M.C.5
  • 38
    • 0031971801 scopus 로고    scopus 로고
    • Organization of chromosome ends in Ustilago maydis: RecQ-like helicase motifs at telomeric regions
    • Sanchez-AlonsoP Guzman P. Organization of chromosome ends in Ustilago maydis: RecQ-like helicase motifs at telomeric regions. Genetics. 1998;148:1043-54
    • Sanchez-AlonsoP Guzman P. Organization of chromosome ends in Ustilago maydis: RecQ-like helicase motifs at telomeric regions. Genetics. 1998;148:1043-54.
    • (1998) Genetics , vol.148 , pp. 1043-1054
    • Sanchez-AlonsoP, G.P.1
  • 39
    • 79955115574 scopus 로고    scopus 로고
    • Comparative genome sequence analysis underscores mycoparasitism as the ancestral life style of Trichoderma
    • 1:CAS:528:DC%2BC3MXlslGnur0%3D Kubicek CP, Herrera-Estrella A, Seidl-Seiboth V, Martinez DA, Druzhinina IS, Comparative genome sequence analysis underscores mycoparasitism as the ancestral life style of Trichoderma. Genome Biol. 2011;12:R40
    • Kubicek CP, Herrera-Estrella A, Seidl-Seiboth V, Martinez DA, Druzhinina IS, et al. Comparative genome sequence analysis underscores mycoparasitism as the ancestral life style of Trichoderma. Genome Biol. 2011;12:R40.
    • (2011) Genome Biol , vol.12 , pp. R40
    • Kubicek, C.P.1    Herrera-Estrella, A.2    Seidl-Seiboth, V.3    Martinez, D.A.4    Druzhinina, I.S.5
  • 40
    • 84921842252 scopus 로고    scopus 로고
    • Swollenin from Trichoderma reesei exhibits hydrolytic activity against cellulosic substrates with features of both endoglucanases and cellobiohydrolases
    • 1:CAS:528:DC%2BC2MXhsVagt7o%3D Andberg M, Penttila die; M, Saloheimo M. Swollenin from Trichoderma reesei exhibits hydrolytic activity against cellulosic substrates with features of both endoglucanases and cellobiohydrolases. Bioresour Technol. 2015;181:105-13
    • Andberg M, Penttilä M, Saloheimo M. Swollenin from Trichoderma reesei exhibits hydrolytic activity against cellulosic substrates with features of both endoglucanases and cellobiohydrolases. Bioresour Technol. 2015;181:105-13.
    • (2015) Bioresour Technol , vol.181 , pp. 105-113
    • Andberg, M.1    Penttilä, M.2    Saloheimo, M.3
  • 41
    • 84888235488 scopus 로고    scopus 로고
    • Genomic mechanisms accounting for the adaptation to parasitism in nematode-trapping fungi
    • Meerupati T, Andersson KM, Friman E, Kumar D, Tunlid A, Genomic mechanisms accounting for the adaptation to parasitism in nematode-trapping fungi. PLoS Genet. 2013;9:e1003909
    • Meerupati T, Andersson KM, Friman E, Kumar D, Tunlid A, et al. Genomic mechanisms accounting for the adaptation to parasitism in nematode-trapping fungi. PLoS Genet. 2013;9:e1003909.
    • (2013) PLoS Genet , vol.9 , pp. e1003909
    • Meerupati, T.1    Andersson, K.M.2    Friman, E.3    Kumar, D.4    Tunlid, A.5
  • 42
    • 78650100793 scopus 로고    scopus 로고
    • Pathogenicity determinants in smut fungi revealed by genome comparison
    • 1:CAS:528:DC%2BC3cXhsFaht7rE Schirawski J, Mannhaupt G, Mu die;nch K, Brefort T, Schipper K, Pathogenicity determinants in smut fungi revealed by genome comparison. Science. 2010;330:1546-8
    • Schirawski J, Mannhaupt G, Münch K, Brefort T, Schipper K, et al. Pathogenicity determinants in smut fungi revealed by genome comparison. Science. 2010;330:1546-8.
    • (2010) Science , vol.330 , pp. 1546-1548
    • Schirawski, J.1    Mannhaupt, G.2    Münch, K.3    Brefort, T.4    Schipper, K.5
  • 43
    • 84869047032 scopus 로고    scopus 로고
    • Novel traits of Trichoderma predicted through the analysis of its secretome
    • 1:CAS:528:DC%2BC38Xhsl2iu73F Druzhinina IS, Shelest E, Kubicek CP. Novel traits of Trichoderma predicted through the analysis of its secretome. FEMS Microbiol Lett. 2012;337:1-9
    • Druzhinina IS, Shelest E, Kubicek CP. Novel traits of Trichoderma predicted through the analysis of its secretome. FEMS Microbiol Lett. 2012;337:1-9.
    • (2012) FEMS Microbiol Lett , vol.337 , pp. 1-9
    • Druzhinina, I.S.1    Shelest, E.2    Kubicek, C.P.3
  • 44
    • 84855225440 scopus 로고    scopus 로고
    • Phylogenomic analysis of polyketide synthase-encoding genes in Trichoderma
    • 1:CAS:528:DC%2BC38XitVKmsrc%3D Baker SE, Perrone G, Richardson NM, Gallo A, Kubicek CP. Phylogenomic analysis of polyketide synthase-encoding genes in Trichoderma. Microbiology. 2012;158:147-54
    • Baker SE, Perrone G, Richardson NM, Gallo A, Kubicek CP. Phylogenomic analysis of polyketide synthase-encoding genes in Trichoderma. Microbiology. 2012;158:147-54.
    • (2012) Microbiology , vol.158 , pp. 147-154
    • Baker, S.E.1    Perrone, G.2    Richardson, N.M.3    Gallo, A.4    Kubicek, C.P.5
  • 45
    • 84886422571 scopus 로고    scopus 로고
    • The polyketide synthase gene pks4 of Trichoderma reesei provides pigmentation and stress resistance
    • 1:CAS:528:DC%2BC3sXhslSqs7rK Atanasova L, Knox BP, Kubicek CP, Druzhinina IS, Baker SE. The polyketide synthase gene pks4 of Trichoderma reesei provides pigmentation and stress resistance. Eukaryot Cell. 2013;12:1499-508
    • Atanasova L, Knox BP, Kubicek CP, Druzhinina IS, Baker SE. The polyketide synthase gene pks4 of Trichoderma reesei provides pigmentation and stress resistance. Eukaryot Cell. 2013;12:1499-508.
    • (2013) Eukaryot Cell , vol.12 , pp. 1499-1508
    • Atanasova, L.1    Knox, B.P.2    Kubicek, C.P.3    Druzhinina, I.S.4    Baker, S.E.5
  • 46
    • 84883353135 scopus 로고    scopus 로고
    • AntiSMASH 2.0 - A versatile platform for genome mining of secondary metabolite producers
    • Blin K, Medema MH, Kazempour D, Fischbach MA, Breitling R, AntiSMASH 2.0 - a versatile platform for genome mining of secondary metabolite producers. Nucl Acids Res. 2013;41:W204-12
    • Blin K, Medema MH, Kazempour D, Fischbach MA, Breitling R, et al. AntiSMASH 2.0 - a versatile platform for genome mining of secondary metabolite producers. Nucl Acids Res. 2013;41(Web Server issue):W204-12.
    • (2013) Nucl Acids Res , vol.41 , Issue.WEB SERVER ISSUE , pp. W204-212
    • Blin, K.1    Medema, M.H.2    Kazempour, D.3    Fischbach, M.A.4    Breitling, R.5
  • 47
    • 80051799474 scopus 로고    scopus 로고
    • Iron homeostasis-Achilles' heel of Aspergillus fumigatus?
    • 1:CAS:528:DC%2BC3MXhtVGlsL3O Schrettl M, Haas H. Iron homeostasis-Achilles' heel of Aspergillus fumigatus? Curr Opin Microbiol. 2011;14:400-5
    • Schrettl M, Haas H. Iron homeostasis-Achilles' heel of Aspergillus fumigatus? Curr Opin Microbiol. 2011;14:400-5.
    • (2011) Curr Opin Microbiol , vol.14 , pp. 400-405
    • Schrettl, M.1    Haas, H.2
  • 48
    • 0345204609 scopus 로고
    • Biological effects of Sirodesmin-PL, a phytotoxin produced by Leptosphaeria maculans
    • 1:CAS:528:DyaL1cXmt1Krtbw%3D Rouxel T, Chupeau Y, Fritz R, Kollmann A, Bousquet JF. Biological effects of Sirodesmin-PL, a phytotoxin produced by Leptosphaeria maculans. Plant Sci. 1988;57:45-53
    • Rouxel T, Chupeau Y, Fritz R, Kollmann A, Bousquet JF. Biological effects of Sirodesmin-PL, a phytotoxin produced by Leptosphaeria maculans. Plant Sci. 1988;57:45-53.
    • (1988) Plant Sci , vol.57 , pp. 45-53
    • Rouxel, T.1    Chupeau, Y.2    Fritz, R.3    Kollmann, A.4    Bousquet, J.F.5
  • 49
    • 41549141861 scopus 로고    scopus 로고
    • Horizontal transfer of a nitrate assimilation gene cluster and ecological transitions in fungi: A phylogenetic study
    • Slot JC, Hibbett DS. Horizontal transfer of a nitrate assimilation gene cluster and ecological transitions in fungi: a phylogenetic study. PLoS One. 2007;2:e1097
    • Slot JC, Hibbett DS. Horizontal transfer of a nitrate assimilation gene cluster and ecological transitions in fungi: a phylogenetic study. PLoS One. 2007;2:e1097.
    • (2007) PLoS One , vol.2 , pp. e1097
    • Slot, J.C.1    Hibbett, D.S.2
  • 50
    • 14544301584 scopus 로고    scopus 로고
    • Clusters of co-expressed genes in mammalian genomes are conserved by natural selection
    • Singer GA, Lloyd AT, Huminiecki LH, Wolfe KH. Clusters of co-expressed genes in mammalian genomes are conserved by natural selection. Mol Biol Evol. 2005;3:767-75
    • Singer GA, Lloyd AT, Huminiecki LH, Wolfe KH. Clusters of co-expressed genes in mammalian genomes are conserved by natural selection. Mol Biol Evol. 2005;3:767-75.
    • (2005) Mol Biol Evol , vol.3 , pp. 767-775
    • Singer, G.A.1    Lloyd, A.T.2    Huminiecki, L.H.3    Wolfe, K.H.4
  • 51
    • 84877263015 scopus 로고    scopus 로고
    • Systems analysis of lactose metabolism in Trichoderma reesei identifies a lactose permease that is essential for cellulase induction
    • 1:CAS:528:DC%2BC3sXnvVyitb8%3D Ivanova C, Baath J, Seiboth B, Kubicek CP. Systems analysis of lactose metabolism in Trichoderma reesei identifies a lactose permease that is essential for cellulase induction. PLoS One. 2013;8:e62631
    • Ivanova C, Baath J, Seiboth B, Kubicek CP. Systems analysis of lactose metabolism in Trichoderma reesei identifies a lactose permease that is essential for cellulase induction. PLoS One. 2013;8:e62631.
    • (2013) PLoS One , vol.8 , pp. e62631
    • Ivanova, C.1    Baath, J.2    Seiboth, B.3    Kubicek, C.P.4
  • 52
    • 84883620601 scopus 로고    scopus 로고
    • Comparative analysis of the Trichoderma reesei transcriptome during growth on the cellulase inducing substrates wheat straw and lactose
    • 1:CAS:528:DC%2BC3sXhvVegs77O Bischof R, Fourtis L, Limbeck A, Gamauf C, Seiboth B, Comparative analysis of the Trichoderma reesei transcriptome during growth on the cellulase inducing substrates wheat straw and lactose. Biotechnol Biofuels. 2013;6:127
    • Bischof R, Fourtis L, Limbeck A, Gamauf C, Seiboth B, et al. Comparative analysis of the Trichoderma reesei transcriptome during growth on the cellulase inducing substrates wheat straw and lactose. Biotechnol Biofuels. 2013;6:127.
    • (2013) Biotechnol Biofuels , vol.6 , pp. 127
    • Bischof, R.1    Fourtis, L.2    Limbeck, A.3    Gamauf, C.4    Seiboth, B.5
  • 53
    • 84926417899 scopus 로고    scopus 로고
    • The β-importin KAP8 (Pse1/Kap121) is required for nuclear import of the cellulase transcriptional regulator XYR1, asexual sporulation and stress resistance in Trichoderma reesei
    • 1:CAS:528:DC%2BC2MXlvV2qtrc%3D Ghassemi S, Lichius A, Bidard F, Lemoine S, Rossignol MN, The beta;-importin KAP8 (Pse1/Kap121) is required for nuclear import of the cellulase transcriptional regulator XYR1, asexual sporulation and stress resistance in Trichoderma reesei. Mol Microbiol. 2015;96:405-18
    • Ghassemi S, Lichius A, Bidard F, Lemoine S, Rossignol MN, et al. The β-importin KAP8 (Pse1/Kap121) is required for nuclear import of the cellulase transcriptional regulator XYR1, asexual sporulation and stress resistance in Trichoderma reesei. Mol Microbiol. 2015;96:405-18.
    • (2015) Mol Microbiol , vol.96 , pp. 405-418
    • Ghassemi, S.1    Lichius, A.2    Bidard, F.3    Lemoine, S.4    Rossignol, M.N.5
  • 54
    • 84883170660 scopus 로고    scopus 로고
    • Functional analyses of Trichoderma reesei LAE1 reveal conserved and contrasting roles of this regulator
    • Aghcheh RK, Bok JW, Phatale PA, Smith KM, Baker SE, Functional analyses of Trichoderma reesei LAE1 reveal conserved and contrasting roles of this regulator. G3 (Bethesda). 2013;3:369-78
    • Aghcheh RK, Bok JW, Phatale PA, Smith KM, Baker SE, et al. Functional analyses of Trichoderma reesei LAE1 reveal conserved and contrasting roles of this regulator. G3 (Bethesda). 2013;3:369-78.
    • (2013) G3 (Bethesda) , vol.3 , pp. 369-378
    • Aghcheh, R.K.1    Bok, J.W.2    Phatale, P.A.3    Smith, K.M.4    Baker, S.E.5
  • 55
    • 79958032907 scopus 로고    scopus 로고
    • Heterochromatin is required for normal distribution of Neurospora crassa CenH3
    • 1:CAS:528:DC%2BC3MXnvFWlu7Y%3D Smith KM, Phatale PA, Sullivan CM, Pomraning KR, Freitag M. Heterochromatin is required for normal distribution of Neurospora crassa CenH3. Mol Cell Biol. 2011;31:2528-42
    • Smith KM, Phatale PA, Sullivan CM, Pomraning KR, Freitag M. Heterochromatin is required for normal distribution of Neurospora crassa CenH3. Mol Cell Biol. 2011;31:2528-42.
    • (2011) Mol Cell Biol , vol.31 , pp. 2528-2542
    • Smith, K.M.1    Phatale, P.A.2    Sullivan, C.M.3    Pomraning, K.R.4    Freitag, M.5
  • 56
    • 34447499169 scopus 로고    scopus 로고
    • Telomeres in the rice blast fungus Magnaporthe oryzae: The world of the end as we know it
    • 1:CAS:528:DC%2BD2sXovFartbo%3D Farman ML. Telomeres in the rice blast fungus Magnaporthe oryzae: the world of the end as we know it. FEMS Microbiol Letts. 2007;273:125-32
    • Farman ML. Telomeres in the rice blast fungus Magnaporthe oryzae: the world of the end as we know it. FEMS Microbiol Letts. 2007;273:125-32.
    • (2007) FEMS Microbiol Letts , vol.273 , pp. 125-132
    • Farman, M.L.1
  • 57
    • 84874041895 scopus 로고    scopus 로고
    • Comparative transcriptomics reveals different strategies of Trichoderma mycoparasitism
    • 1:CAS:528:DC%2BC3sXosVSgurc%3D Atanasova L, Le Crom S, Gruber S, Coulpier F, Seidl-Seiboth V, Comparative transcriptomics reveals different strategies of Trichoderma mycoparasitism. BMC Genom. 2013;14:121
    • Atanasova L, Le Crom S, Gruber S, Coulpier F, Seidl-Seiboth V, et al. Comparative transcriptomics reveals different strategies of Trichoderma mycoparasitism. BMC Genom. 2013;14:121.
    • (2013) BMC Genom , vol.14 , pp. 121
    • Atanasova, L.1    Le Crom, S.2    Gruber, S.3    Coulpier, F.4    Seidl-Seiboth, V.5
  • 58
    • 80055121191 scopus 로고    scopus 로고
    • Expression of biomass-degrading enzymes is a major event during conidium development in Trichoderma reesei
    • 1:CAS:528:DC%2BC3MXhsV2qtLbI Metz B, Seidl-Seiboth V, Haarmann T, Kopchinskiy A, Lorenz P, Expression of biomass-degrading enzymes is a major event during conidium development in Trichoderma reesei. Eukaryot Cell. 2011;10:1527-735
    • Metz B, Seidl-Seiboth V, Haarmann T, Kopchinskiy A, Lorenz P, et al. Expression of biomass-degrading enzymes is a major event during conidium development in Trichoderma reesei. Eukaryot Cell. 2011;10:1527-735.
    • (2011) Eukaryot Cell , vol.10 , pp. 1527-1735
    • Metz, B.1    Seidl-Seiboth, V.2    Haarmann, T.3    Kopchinskiy, A.4    Lorenz, P.5
  • 59
    • 0037371689 scopus 로고    scopus 로고
    • Evidence for co-evolution of gene order and recombination rate
    • Pa acute;l C, Hurst LD. Evidence for co-evolution of gene order and recombination rate. Nat Genet. 2003;33:392-5
    • Pál C, Hurst LD. Evidence for co-evolution of gene order and recombination rate. Nat Genet. 2003;33:392-5.
    • (2003) Nat Genet , vol.33 , pp. 392-395
    • Pál, C.1    Hurst, L.D.2
  • 60
    • 84908378438 scopus 로고    scopus 로고
    • Trichoderma reesei XYN VI- A novel appendage-dependent eukaryotic glucuronoxylan hydrolase
    • 1:CAS:528:DC%2BC2cXhsVGgsrvN Biely P, Puchart V, Stringer MA, M oslash;rkeberg Krogh KB. Trichoderma reesei XYN VI- a novel appendage-dependent eukaryotic glucuronoxylan hydrolase. FEBS J. 2014;281:3894-903
    • Biely P, Puchart V, Stringer MA, Mørkeberg Krogh KB. Trichoderma reesei XYN VI- a novel appendage-dependent eukaryotic glucuronoxylan hydrolase. FEBS J. 2014;281:3894-903.
    • (2014) FEBS J , vol.281 , pp. 3894-3903
    • Biely, P.1    Puchart, V.2    Stringer, M.A.3    Mørkeberg Krogh, K.B.4
  • 61
    • 20244366844 scopus 로고    scopus 로고
    • The genome sequence of the rice blast fungus Magnaporthe grisea
    • 1:CAS:528:DC%2BD2MXjsVequ74%3D Dean RA, Talbot NJ, Ebbole DJ, Farman ML, Mitchell TK, The genome sequence of the rice blast fungus Magnaporthe grisea. Nature. 2005;434:980-6
    • Dean RA, Talbot NJ, Ebbole DJ, Farman ML, Mitchell TK, et al. The genome sequence of the rice blast fungus Magnaporthe grisea. Nature. 2005;434:980-6.
    • (2005) Nature , vol.434 , pp. 980-986
    • Dean, R.A.1    Talbot, N.J.2    Ebbole, D.J.3    Farman, M.L.4    Mitchell, T.K.5
  • 62
    • 84908555992 scopus 로고    scopus 로고
    • Similar is not the same: Differences in the function of the (hemi) cellulolytic regulator XlnR (Xlr1/Xyr1) in filamentous fungi
    • 1:CAS:528:DC%2BC2cXhtlWktbnJ Klaubauf S, Narang HM, Post H, Zhou M, Brunner K, Similar is not the same: differences in the function of the (hemi) cellulolytic regulator XlnR (Xlr1/Xyr1) in filamentous fungi. Fungal Genet Biol. 2014;72:73-81
    • Klaubauf S, Narang HM, Post H, Zhou M, Brunner K, et al. Similar is not the same: differences in the function of the (hemi) cellulolytic regulator XlnR (Xlr1/Xyr1) in filamentous fungi. Fungal Genet Biol. 2014;72:73-81.
    • (2014) Fungal Genet Biol , vol.72 , pp. 73-81
    • Klaubauf, S.1    Narang, H.M.2    Post, H.3    Zhou, M.4    Brunner, K.5
  • 63
    • 33845671822 scopus 로고    scopus 로고
    • Xyr1 (xylanase regulator 1) regulates both the hydrolytic enzyme system and d-xylose metabolism in Hypocrea jecorina
    • 1:CAS:528:DC%2BD28XhtlGrurrM Stricker AR, Grosstessner-Hain K, Wu die;rleitner E, Mach RL. Xyr1 (xylanase regulator 1) regulates both the hydrolytic enzyme system and d-xylose metabolism in Hypocrea jecorina. Eukaryot Cell. 2006;5:2128-37
    • Stricker AR, Grosstessner-Hain K, Würleitner E, Mach RL. Xyr1 (xylanase regulator 1) regulates both the hydrolytic enzyme system and d-xylose metabolism in Hypocrea jecorina. Eukaryot Cell. 2006;5:2128-37.
    • (2006) Eukaryot Cell , vol.5 , pp. 2128-2137
    • Stricker, A.R.1    Grosstessner-Hain, K.2    Würleitner, E.3    Mach, R.L.4
  • 64
    • 33947317206 scopus 로고    scopus 로고
    • The epigenetic regulation of mammalian telomeres
    • 1:CAS:528:DC%2BD2sXivVGkur4%3D Blasco MA. The epigenetic regulation of mammalian telomeres. Nat Rev Genet. 2007;8:299-309
    • Blasco MA. The epigenetic regulation of mammalian telomeres. Nat Rev Genet. 2007;8:299-309.
    • (2007) Nat Rev Genet , vol.8 , pp. 299-309
    • Blasco, M.A.1
  • 65
    • 72949121660 scopus 로고    scopus 로고
    • The fungus Neurospora crassa displays telomeric silencing mediated by multiple sirtuins and by methylation of histone H3 lysine 9
    • Smith KM, Kothe GO, Matsen CB, Khlafallah TK, Adhvaryu KK, The fungus Neurospora crassa displays telomeric silencing mediated by multiple sirtuins and by methylation of histone H3 lysine 9. Epigenetics Chromatin. 2008;3:5
    • Smith KM, Kothe GO, Matsen CB, Khlafallah TK, Adhvaryu KK, et al. The fungus Neurospora crassa displays telomeric silencing mediated by multiple sirtuins and by methylation of histone H3 lysine 9. Epigenetics Chromatin. 2008;3:5.
    • (2008) Epigenetics Chromatin , vol.3 , pp. 5
    • Smith, K.M.1    Kothe, G.O.2    Matsen, C.B.3    Khlafallah, T.K.4    Adhvaryu, K.K.5
  • 66
    • 84939172583 scopus 로고    scopus 로고
    • L-Methionine repressible promoters for tuneable gene expression in Trichoderma reesei
    • Bischof RH, Horejs J, Metz B, Gamauf C, Kubicek CP, L-Methionine repressible promoters for tuneable gene expression in Trichoderma reesei. Microb Cell Fact. 2015;14:120
    • Bischof RH, Horejs J, Metz B, Gamauf C, Kubicek CP, et al. L-Methionine repressible promoters for tuneable gene expression in Trichoderma reesei. Microb Cell Fact. 2015;14:120.
    • (2015) Microb Cell Fact , vol.14 , pp. 120
    • Bischof, R.H.1    Horejs, J.2    Metz, B.3    Gamauf, C.4    Kubicek, C.P.5
  • 67
    • 0031460176 scopus 로고    scopus 로고
    • Chromosome ends: All the same under their caps
    • 1:CAS:528:DyaK1cXosFKmuw%3D%3D Pryde FA, Gorham HC, Louis EJ. Chromosome ends: all the same under their caps. Curr Opin Genet Develop. 1997;7:822-8
    • Pryde FA, Gorham HC, Louis EJ. Chromosome ends: all the same under their caps. Curr Opin Genet Develop. 1997;7:822-8.
    • (1997) Curr Opin Genet Develop , vol.7 , pp. 822-828
    • Pryde, F.A.1    Gorham, H.C.2    Louis, E.J.3
  • 68
    • 0034079739 scopus 로고    scopus 로고
    • Evidence for the coincident initiation of homolog pairing and synapsis during the telomere-clustering (bouquet) stage of meiotic prophase
    • 1:CAS:528:DC%2BD3cXisVygsbs%3D Bass HW, Riera-Lizarazu O, Ananiev EV, Bordoli SJ, Rines HW, Evidence for the coincident initiation of homolog pairing and synapsis during the telomere-clustering (bouquet) stage of meiotic prophase. J Cell Sci. 2000;113:1033-42
    • Bass HW, Riera-Lizarazu O, Ananiev EV, Bordoli SJ, Rines HW, et al. Evidence for the coincident initiation of homolog pairing and synapsis during the telomere-clustering (bouquet) stage of meiotic prophase. J Cell Sci. 2000;113:1033-42.
    • (2000) J Cell Sci , vol.113 , pp. 1033-1042
    • Bass, H.W.1    Riera-Lizarazu, O.2    Ananiev, E.V.3    Bordoli, S.J.4    Rines, H.W.5
  • 69
    • 84914148322 scopus 로고    scopus 로고
    • The subtelomeric region is important for chromosome recognition and pairing during meiosis
    • del Carmen Caldero acute;n M, Rey MD, Cabrera A, Prieto P. The subtelomeric region is important for chromosome recognition and pairing during meiosis. Scientific Rep. 2014;4:6488
    • del Carmen Calderón M, Rey MD, Cabrera A, Prieto P. The subtelomeric region is important for chromosome recognition and pairing during meiosis. Scientific Rep. 2014;4:6488.
    • (2014) Scientific Rep , vol.4 , pp. 6488
    • Del Carmen, C.M.1    Rey, M.D.2    Cabrera, A.3    Prieto, P.4
  • 70
    • 84885641766 scopus 로고    scopus 로고
    • Is an organic nitrogen source needed for cellulase production by Trichoderma reesei Rut-C30?
    • 1:CAS:528:DC%2BC3sXhs1SgtLjP Rodriguez-Gomez D, Hobley TJ. Is an organic nitrogen source needed for cellulase production by Trichoderma reesei Rut-C30? World J Microbiol Biotechnol. 2013;29:2157-65
    • Rodriguez-Gomez D, Hobley TJ. Is an organic nitrogen source needed for cellulase production by Trichoderma reesei Rut-C30? World J Microbiol Biotechnol. 2013;29:2157-65.
    • (2013) World J Microbiol Biotechnol , vol.29 , pp. 2157-2165
    • Rodriguez-Gomez, D.1    Hobley, T.J.2
  • 71
    • 84903474461 scopus 로고    scopus 로고
    • Iron and copper as virulence modulators in human fungal pathogens
    • 1:CAS:528:DC%2BC2cXhtVCru7vF Ding C, Festa RA, Sun TS, Wang ZY. Iron and copper as virulence modulators in human fungal pathogens. Mol Microbiol. 2014;93:10-23
    • Ding C, Festa RA, Sun TS, Wang ZY. Iron and copper as virulence modulators in human fungal pathogens. Mol Microbiol. 2014;93:10-23.
    • (2014) Mol Microbiol , vol.93 , pp. 10-23
    • Ding, C.1    Festa, R.A.2    Sun, T.S.3    Wang, Z.Y.4
  • 72
    • 84952628589 scopus 로고    scopus 로고
    • Nitrate content in a collection of higher mushrooms
    • Bóbics R, Krüzselyi D, Vetter J. Nitrate content in a collection of higher mushrooms. J Sci Food Agric. 2015. doi: 10.1002/jsfa.7108.
    • (2015) J Sci Food Agric
    • Bóbics, R.1    Krüzselyi, D.2    Vetter, J.3
  • 73
    • 84963921895 scopus 로고    scopus 로고
    • Diverse lifestyles and strategies of plant pathogenesis encoded in the genomes of eighteen Dothideomycetes fungi
    • Ohm R, Goodwin S, Grigoriev I, Consortium D Ohm R, Goodwin S, Grigoriev I, Consortium D. Diverse lifestyles and strategies of plant pathogenesis encoded in the genomes of eighteen Dothideomycetes fungi. Phytopathology. 2013;103:106-106
    • Ohm R, Goodwin S, Grigoriev I, Consortium D. Diverse lifestyles and strategies of plant pathogenesis encoded in the genomes of eighteen Dothideomycetes fungi. Phytopathology. 2013;103:106-106.
    • (2013) Phytopathology , vol.103 , pp. 106
  • 74
    • 84884282697 scopus 로고    scopus 로고
    • Horizontal gene transfer in osmotrophs: Playing with public goods
    • 1:CAS:528:DC%2BC3sXhsVSktb3O Richards TA, Talbot NJ. Horizontal gene transfer in osmotrophs: playing with public goods. Nat Rev Microbiol. 2013;11:720-7
    • Richards TA, Talbot NJ. Horizontal gene transfer in osmotrophs: playing with public goods. Nat Rev Microbiol. 2013;11:720-7.
    • (2013) Nat Rev Microbiol , vol.11 , pp. 720-727
    • Richards, T.A.1    Talbot, N.J.2
  • 75
    • 65649149779 scopus 로고    scopus 로고
    • Terrific protein traffic: The mystery of effector protein delivery by filamentous plant pathogens
    • 1:CAS:528:DC%2BD1MXlsVelu70%3D Panstruga R, Dodds PN. Terrific protein traffic: the mystery of effector protein delivery by filamentous plant pathogens. Science. 2009;324:748-50
    • Panstruga R, Dodds PN. Terrific protein traffic: the mystery of effector protein delivery by filamentous plant pathogens. Science. 2009;324:748-50.
    • (2009) Science , vol.324 , pp. 748-750
    • Panstruga, R.1    Dodds, P.N.2
  • 76
    • 67649550674 scopus 로고    scopus 로고
    • Fungal effector proteins
    • 1:CAS:528:DC%2BD1MXht1Gjt73J Stergiopoulos I, de Wit PJ. Fungal effector proteins. Annu Rev Phytopathol. 2009;47:233-63
    • Stergiopoulos I, de Wit PJ. Fungal effector proteins. Annu Rev Phytopathol. 2009;47:233-63.
    • (2009) Annu Rev Phytopathol , vol.47 , pp. 233-263
    • Stergiopoulos, I.1    De Wit, P.J.2
  • 77
    • 84873665639 scopus 로고    scopus 로고
    • Self-assembly at air/water interfaces and carbohydrate binding properties of the small secreted protein EPL1 from the fungus Trichoderma atroviride
    • 1:CAS:528:DC%2BC3sXit1KhtLk%3D Frischmann A, Neudl S, Gaderer R, Bonazza K, Zach S, Self-assembly at air/water interfaces and carbohydrate binding properties of the small secreted protein EPL1 from the fungus Trichoderma atroviride. J Biol Chem. 2013;288:4278-87
    • Frischmann A, Neudl S, Gaderer R, Bonazza K, Zach S, et al. Self-assembly at air/water interfaces and carbohydrate binding properties of the small secreted protein EPL1 from the fungus Trichoderma atroviride. J Biol Chem. 2013;288:4278-87.
    • (2013) J Biol Chem , vol.288 , pp. 4278-4287
    • Frischmann, A.1    Neudl, S.2    Gaderer, R.3    Bonazza, K.4    Zach, S.5
  • 78
    • 84949595428 scopus 로고    scopus 로고
    • The Cerato-Platanin protein Epl-1 from Trichoderma harzianum is involved in mycoparasitism, plant resistance induction and self cell wall protection
    • 1:CAS:528:DC%2BC2MXhvF2msLfL Gomes EV, Costa Mdo N, de Paula RG, Ricci de Azevedo R, da Silva FL, The Cerato-Platanin protein Epl-1 from Trichoderma harzianum is involved in mycoparasitism, plant resistance induction and self cell wall protection. Sci Rep. 2015;5:17998
    • Gomes EV, Costa Mdo N, de Paula RG, Ricci de Azevedo R, da Silva FL, et al. The Cerato-Platanin protein Epl-1 from Trichoderma harzianum is involved in mycoparasitism, plant resistance induction and self cell wall protection. Sci Rep. 2015;5:17998.
    • (2015) Sci Rep , vol.5 , pp. 17998
    • Gomes, E.V.1    Costa Mdo, N.2    De Paula, R.G.3    Ricci De Azevedo, R.4    Da Silva, F.L.5
  • 79
    • 84960503577 scopus 로고    scopus 로고
    • Restoration of female fertility in Trichoderma reesei QM6a provides the basis for inbreeding in this industrial cellulase producing fungus
    • Linke R, Thallinger GG, Haarmann T, Eidner J, Schreiter M, Restoration of female fertility in Trichoderma reesei QM6a provides the basis for inbreeding in this industrial cellulase producing fungus. Biotechnol Biofuels. 2015;8:155
    • Linke R, Thallinger GG, Haarmann T, Eidner J, Schreiter M, et al. Restoration of female fertility in Trichoderma reesei QM6a provides the basis for inbreeding in this industrial cellulase producing fungus. Biotechnol Biofuels. 2015;8:155.
    • (2015) Biotechnol Biofuels , vol.8 , pp. 155
    • Linke, R.1    Thallinger, G.G.2    Haarmann, T.3    Eidner, J.4    Schreiter, M.5
  • 80
    • 33847264343 scopus 로고    scopus 로고
    • Enrichment or depletion of a GO category within a class of genes: Which test?
    • 1:CAS:528:DC%2BD2sXhvFWltLc%3D Rivals I, Personnaz L, Taing L, Potier MC. Enrichment or depletion of a GO category within a class of genes: which test? Bioinformatics. 2007;23:401-7
    • Rivals I, Personnaz L, Taing L, Potier MC. Enrichment or depletion of a GO category within a class of genes: which test? Bioinformatics. 2007;23:401-7.
    • (2007) Bioinformatics , vol.23 , pp. 401-407
    • Rivals, I.1    Personnaz, L.2    Taing, L.3    Potier, M.C.4
  • 81
    • 0037316303 scopus 로고    scopus 로고
    • A comparison of normalization methods for high density oligonucleotide array data based on variance and bias
    • 1:CAS:528:DC%2BD3sXitlCnsL4%3D Bolstad BM, Irizarry RA, Astrand M, Speed TP. A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics. 2003;19:185-93
    • Bolstad BM, Irizarry RA, Astrand M, Speed TP. A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics. 2003;19:185-93.
    • (2003) Bioinformatics , vol.19 , pp. 185-193
    • Bolstad, B.M.1    Irizarry, R.A.2    Astrand, M.3    Speed, T.P.4
  • 82
    • 12344280017 scopus 로고    scopus 로고
    • Summaries of Affymetrix GeneChip probe level data
    • Irizarry RA, Bolstad BM, Collin F, Cope LM, Hobbs B, Speed TP. Summaries of Affymetrix GeneChip probe level data. Nucleic Acids Res. 2003;31:e15
    • Irizarry RA, Bolstad BM, Collin F, Cope LM, Hobbs B, Speed TP. Summaries of Affymetrix GeneChip probe level data. Nucleic Acids Res. 2003;31:e15.
    • (2003) Nucleic Acids Res , vol.31 , pp. e15
    • Irizarry, R.A.1    Bolstad, B.M.2    Collin, F.3    Cope, L.M.4    Hobbs, B.5    Speed, T.P.6
  • 83
    • 0001677717 scopus 로고
    • Controlling the false discovery rate: A practical and powerful approach to multiple testing
    • Benjamini Y, Hochberg Y. Controlling the false discovery rate: a practical and powerful approach to multiple testing. J R Stat Soc Series B Stat Methodol. 1995;57:289-300
    • Benjamini Y, Hochberg Y. Controlling the false discovery rate: a practical and powerful approach to multiple testing. J R Stat Soc Series B Stat Methodol. 1995;57:289-300.
    • (1995) J R Stat Soc Series B Stat Methodol , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 84
    • 84861736018 scopus 로고    scopus 로고
    • Eoulsan: A cloud computing-based framework facilitating high throughput sequencing analyses
    • 1:CAS:528:DC%2BC38Xns1SlsbY%3D Jourdren L, Bernard M, Dillies MA, Le Crom S. Eoulsan: a cloud computing-based framework facilitating high throughput sequencing analyses. Bioinformatics. 2012;28:1542-3
    • Jourdren L, Bernard M, Dillies MA, Le Crom S. Eoulsan: a cloud computing-based framework facilitating high throughput sequencing analyses. Bioinformatics. 2012;28:1542-3.
    • (2012) Bioinformatics , vol.28 , pp. 1542-1543
    • Jourdren, L.1    Bernard, M.2    Dillies, M.A.3    Le, C.S.4
  • 85
    • 46249106990 scopus 로고    scopus 로고
    • Mapping and quantifying mammalian transcriptomes by RNA-Seq
    • 1:CAS:528:DC%2BD1cXnslyqs7k%3D Mortazavi A, Williams BA, McCue K, Schaeffer L, Wold B. Mapping and quantifying mammalian transcriptomes by RNA-Seq. Nat Methods. 2008;5:621-8
    • Mortazavi A, Williams BA, McCue K, Schaeffer L, Wold B. Mapping and quantifying mammalian transcriptomes by RNA-Seq. Nat Methods. 2008;5:621-8.
    • (2008) Nat Methods , vol.5 , pp. 621-628
    • Mortazavi, A.1    Williams, B.A.2    McCue, K.3    Schaeffer, L.4    Wold, B.5
  • 86
    • 33750831582 scopus 로고    scopus 로고
    • Annotation, submission and screening of repetitive elements in Repbase: RepbaseSubmitter and Censor
    • Kohany O, Gentles AJ, Hankus L, Jurka J. Annotation, submission and screening of repetitive elements in Repbase: repbaseSubmitter and Censor. BMC Bioinformatics. 2006;7:474
    • Kohany O, Gentles AJ, Hankus L, Jurka J. Annotation, submission and screening of repetitive elements in Repbase: repbaseSubmitter and Censor. BMC Bioinformatics. 2006;7:474.
    • (2006) BMC Bioinformatics , vol.7 , pp. 474
    • Kohany, O.1    Gentles, A.J.2    Hankus, L.3    Jurka, J.4


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