Use of metagenomic shotgun sequencing technology to detect foodborne pathogens within the microbiome of the beef production chain

Applied and Environmental Microbiology

Volumn 82, Issue 8, 2016, Pages 2433-2443

  Yang, Xiang ^a   Noyes, Noelle R ^a   Doster, Enrique ^a   Martin, Jennifer N ^a   Linke, Lyndsey M ^a   Magnuson, Roberta J ^a   Yang, Hua ^a   Geornaras, Ifigenia ^a   Woerner, Dale R ^a   Jones, Kenneth L ^b   Ruiz, Jaime ^c   Boucher, Christina ^c   Morley, Paul S ^a   Belk, Keith E ^a  

^a Veterinary Dentistry and Oral Surgery   (United States)

^b UNIVERSITY OF COLORADO SCHOOL OF MEDICINE   (United States)

^c Department of Computer Science   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIA; BEEF; CHAINS; CLOSTRIDIUM; DISEASES; ECOLOGY; ENVIRONMENTAL TECHNOLOGY; ESCHERICHIA COLI; MEATS; PATHOGENS; POPULATION STATISTICS; SALMONELLA;

FOOD-BORNE PATHOGENS; GLOBAL PUBLIC HEALTH; LISTERIA MONOCYTOGENES; MEAT PRODUCTION CHAINS; PATHOGEN IDENTIFICATION; PATHOGEN POPULATIONS; PATHOGENIC BACTERIUM; STAPHYLOCOCCUS AUREUS; ENVIRONMENTAL SAMPLE;

FOOD MICROBIOLOGY;

BACTERIUM; BUSHMEAT; CATTLE; GENETIC ANALYSIS; MEAT; PATHOGEN; PUBLIC HEALTH; SPECIES DIVERSITY; TECHNOLOGICAL DEVELOPMENT;

BACTERIA (MICROORGANISMS); BOS; CAMPYLOBACTER; CAMPYLOBACTER COLI; CAMPYLOBACTER FETUS; CAMPYLOBACTER JEJUNI; CLOSTRIDIUM; CLOSTRIDIUM BOTULINUM; CLOSTRIDIUM PERFRINGENS; ESCHERICHIA COLI; LISTERIA MONOCYTOGENES; SALMONELLA ENTERICA; STAPHYLOCOCCUS AUREUS; ENVIRONMENTAL SAMPLES (BACTERIA);

ANIMAL; BACTERIUM; BOVINE; CLASSIFICATION; DNA SEQUENCE; FOOD HANDLING; GENETICS; METAGENOMICS; MICROBIOLOGY; MICROFLORA; RED MEAT;

ANIMALS; BACTERIA; CATTLE; ENVIRONMENTAL MICROBIOLOGY; FOOD HANDLING; METAGENOMICS; MICROBIOTA; RED MEAT; SEQUENCE ANALYSIS, DNA;

EID: 84963569080     PISSN: 00992240     EISSN: 10985336     Source Type: Journal    
DOI: 10.1128/AEM.00078-16     Document Type: Article

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