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Volumn 62, Issue 5, 2016, Pages 392-398

Effect of dietary protein sources on the small intestine microbiome of weaned piglets based on high-throughput sequencing

Author keywords

Dietary protein sources; High throughput sequencing; Microbiome; Small intestine; Weaned piglet

Indexed keywords

GENES; THROUGHPUT;

EID: 84963546131     PISSN: 02668254     EISSN: 1472765X     Source Type: Journal    
DOI: 10.1111/lam.12559     Document Type: Article
Times cited : (20)

References (33)
  • 1
    • 84879411201 scopus 로고    scopus 로고
    • The abundance and variety of carbohydrate-active enzymes in the human gut microbiota
    • Abdessamad, E.K., Fabric, A., Gordon, J.I., Didier, R. and Bernard, H. (2013) The abundance and variety of carbohydrate-active enzymes in the human gut microbiota. Nat Rev Microbiol 11, 497-504.
    • (2013) Nat Rev Microbiol , vol.11 , pp. 497-504
    • Abdessamad, E.K.1    Fabric, A.2    Gordon, J.I.3    Didier, R.4    Bernard, H.5
  • 2
    • 0037165970 scopus 로고    scopus 로고
    • Effect of soybean meal replacement by cottonseed meal and iron supplementation on growth, immune response and resistance of Channel Catfish (Ictalurus puctatus) to Edwardsiella ictaluri challenge
    • Barros, M.M., Lim, C. and Klesius, P.H. (2002) Effect of soybean meal replacement by cottonseed meal and iron supplementation on growth, immune response and resistance of Channel Catfish (Ictalurus puctatus) to Edwardsiella ictaluri challenge. Aquaculture 207, 263-279.
    • (2002) Aquaculture , vol.207 , pp. 263-279
    • Barros, M.M.1    Lim, C.2    Klesius, P.H.3
  • 3
    • 78449296237 scopus 로고    scopus 로고
    • Individuality in gut microbiota composition is a complex polygenic trait shaped by multiple environmental and host genetic factors
    • Benson, A.K., Kelly, S.A., Legge, R., Ma, F., Low, S.J. and Kim, J. (2010) Individuality in gut microbiota composition is a complex polygenic trait shaped by multiple environmental and host genetic factors. Proc Natl Acad Sci USA 107, 18933-18938.
    • (2010) Proc Natl Acad Sci USA , vol.107 , pp. 18933-18938
    • Benson, A.K.1    Kelly, S.A.2    Legge, R.3    Ma, F.4    Low, S.J.5    Kim, J.6
  • 5
    • 84905719415 scopus 로고    scopus 로고
    • Impact of fiber types on gut microbiota, gut environment and gut function in fattening pigs
    • Chen, H., Mao, X.B., Che, L.Q., Yu, B., He, J. and Yu, J. (2014) Impact of fiber types on gut microbiota, gut environment and gut function in fattening pigs. Anim Feed Sci Technol 195, 101-111.
    • (2014) Anim Feed Sci Technol , vol.195 , pp. 101-111
    • Chen, H.1    Mao, X.B.2    Che, L.Q.3    Yu, B.4    He, J.5    Yu, J.6
  • 6
    • 0037251969 scopus 로고    scopus 로고
    • The Ribosomal Database Project (RDP-II): previewing a new autoaligner that allows regular updates and the new prokaryotic taxonomy
    • Cole, J.R., Chai, B., Marsh, T.L., Farris, R.J., Wang, Q. and Kulam, S.A. (2003) The Ribosomal Database Project (RDP-II): previewing a new autoaligner that allows regular updates and the new prokaryotic taxonomy. Nucleic Acids Res 31, 442-443.
    • (2003) Nucleic Acids Res , vol.31 , pp. 442-443
    • Cole, J.R.1    Chai, B.2    Marsh, T.L.3    Farris, R.J.4    Wang, Q.5    Kulam, S.A.6
  • 7
    • 0031718812 scopus 로고    scopus 로고
    • Antimould activity of sourdough lactic acid bacteria: identification of a mixture of organic acids produced by Lactobacillus sanfrancisco CB1
    • Corsetti, A., Gobbetti, M., Rossi, J. and Damiani, P. (1998) Antimould activity of sourdough lactic acid bacteria: identification of a mixture of organic acids produced by Lactobacillus sanfrancisco CB1. Appl Microbiol Biotechnol 50, 253-256.
    • (1998) Appl Microbiol Biotechnol , vol.50 , pp. 253-256
    • Corsetti, A.1    Gobbetti, M.2    Rossi, J.3    Damiani, P.4
  • 9
    • 33746805041 scopus 로고    scopus 로고
    • Influence of dietary components on development of the microbiota in single-stomached species
    • Eva, B., Williams, B.A., Hauke, S., Rainer, M. and Verstegen, M.W.A. (2006) Influence of dietary components on development of the microbiota in single-stomached species. Nutr Res Rev 19, 63-78.
    • (2006) Nutr Res Rev , vol.19 , pp. 63-78
    • Eva, B.1    Williams, B.A.2    Hauke, S.3    Rainer, M.4    Verstegen, M.W.A.5
  • 10
    • 84954585176 scopus 로고    scopus 로고
    • Metagenomic approaches to disclose disease-associated pathogens: detection of viral pathogens in honeybees
    • Granberg, F., Karlsson, O.E. and Belák, S. (2015) Metagenomic approaches to disclose disease-associated pathogens: detection of viral pathogens in honeybees. Methods Mol Biol 1247, 491-511.
    • (2015) Methods Mol Biol , vol.1247 , pp. 491-511
    • Granberg, F.1    Karlsson, O.E.2    Belák, S.3
  • 11
    • 84874737205 scopus 로고    scopus 로고
    • High-throughput DNA sequence analysis reveals stable engraftment of gut microbiota following transplantation of previously frozen fecal bacteria
    • Hamilton, M.J., Weingarden, A.R., Unno, T., Khoruts, A. and Sadowsky, M.J. (2013) High-throughput DNA sequence analysis reveals stable engraftment of gut microbiota following transplantation of previously frozen fecal bacteria. Gut Microbes 4, 125-135.
    • (2013) Gut Microbes , vol.4 , pp. 125-135
    • Hamilton, M.J.1    Weingarden, A.R.2    Unno, T.3    Khoruts, A.4    Sadowsky, M.J.5
  • 12
    • 84875528040 scopus 로고    scopus 로고
    • Gastrointestinal health and function in weaned pigs: a review of feeding strategies to control post-weaning diarrhoea without using in-feed antimicrobial compounds
    • Heo, J.M., Opapeju, F.O., Pluske, J.R., Kim, J.C., Hampson, D.J. and Nyachoti, C.M. (2013) Gastrointestinal health and function in weaned pigs: a review of feeding strategies to control post-weaning diarrhoea without using in-feed antimicrobial compounds. J Anim Physiol Anim Nutr 97, 207-237.
    • (2013) J Anim Physiol Anim Nutr , vol.97 , pp. 207-237
    • Heo, J.M.1    Opapeju, F.O.2    Pluske, J.R.3    Kim, J.C.4    Hampson, D.J.5    Nyachoti, C.M.6
  • 13
    • 0029166371 scopus 로고
    • Bacterial fermentation of complex carbohydrate in the human colon
    • Hill, M.J. (1995) Bacterial fermentation of complex carbohydrate in the human colon. Eur J Cancer Prev 4, 353-358.
    • (1995) Eur J Cancer Prev , vol.4 , pp. 353-358
    • Hill, M.J.1
  • 16
    • 69949088176 scopus 로고    scopus 로고
    • Better living through microbial action: the benefits of the mammalian gastrointestinal microbiota on the host
    • Leser, T.D. and Mølbak, L. (2009) Better living through microbial action: the benefits of the mammalian gastrointestinal microbiota on the host. Environ Microbiol 11, 2194-2206.
    • (2009) Environ Microbiol , vol.11 , pp. 2194-2206
    • Leser, T.D.1    Mølbak, L.2
  • 17
    • 32944466887 scopus 로고    scopus 로고
    • Ecological and evolutionary forces shaping microbial diversity in the human intestine
    • Ley, R.E., Peterson, D.A. and Gordon, J.I. (2006) Ecological and evolutionary forces shaping microbial diversity in the human intestine. Cell 124, 837-848.
    • (2006) Cell , vol.124 , pp. 837-848
    • Ley, R.E.1    Peterson, D.A.2    Gordon, J.I.3
  • 18
    • 0001957731 scopus 로고
    • Use of soybean products in diets for aquaculture species
    • Lovell, R.T. (1988) Use of soybean products in diets for aquaculture species. J Aquatic Prod 2, 27-52.
    • (1988) J Aquatic Prod , vol.2 , pp. 27-52
    • Lovell, R.T.1
  • 19
    • 78751575501 scopus 로고    scopus 로고
    • UniFrac: an effective distance metric for microbial community comparison
    • Lozupone, C., Lladser, M.E., Knights, D., Stombaugh, J. and Knight, R. (2011) UniFrac: an effective distance metric for microbial community comparison. ISME J 5, 169-172.
    • (2011) ISME J , vol.5 , pp. 169-172
    • Lozupone, C.1    Lladser, M.E.2    Knights, D.3    Stombaugh, J.4    Knight, R.5
  • 20
    • 84872607456 scopus 로고    scopus 로고
    • Sequencing of the first ayu (Plecoglossus altivelis) macrophage transcriptome and microarray development for investigation the effect of LECT2 on macrophages
    • Lu, X.J., Hang, X.Y., Yin, L., He, Y.Q., Chen, J., Shi, Y.H. and Li, C.H. (2013) Sequencing of the first ayu (Plecoglossus altivelis) macrophage transcriptome and microarray development for investigation the effect of LECT2 on macrophages. Fish Shellfish Immunol 34, 497-504.
    • (2013) Fish Shellfish Immunol , vol.34 , pp. 497-504
    • Lu, X.J.1    Hang, X.Y.2    Yin, L.3    He, Y.Q.4    Chen, J.5    Shi, Y.H.6    Li, C.H.7
  • 21
    • 67349113533 scopus 로고    scopus 로고
    • The interaction between dietary crude protein and fermentable carbohydrate source on piglet post weaning performance, diet digestibility and selected faecal microbial populations and volatile fatty acid concentration
    • Lynch, B., Callan, J.J. and O'Doherty, J.V. (2009) The interaction between dietary crude protein and fermentable carbohydrate source on piglet post weaning performance, diet digestibility and selected faecal microbial populations and volatile fatty acid concentration. Livest Sci 124, 93-100.
    • (2009) Livest Sci , vol.124 , pp. 93-100
    • Lynch, B.1    Callan, J.J.2    O'Doherty, J.V.3
  • 23
    • 0005242284 scopus 로고
    • Evaluation of greek cottonseed meal. 2. use in rations for fattening pigs
    • Papadopoulos, G., Fegeros, K. and Ziras, E. (1987) Evaluation of greek cottonseed meal. 2. use in rations for fattening pigs. Anim Feed Sci Technol 18, 303-313.
    • (1987) Anim Feed Sci Technol , vol.18 , pp. 303-313
    • Papadopoulos, G.1    Fegeros, K.2    Ziras, E.3
  • 24
    • 84903438950 scopus 로고    scopus 로고
    • Characterization of the fecal microbiome in different swine groups by high-throughput sequencing
    • Park, S.J., Kim, J., Lee, J.S., Rhee, S.K. and Kim, H. (2014) Characterization of the fecal microbiome in different swine groups by high-throughput sequencing. Anaerobe 28, 157-162.
    • (2014) Anaerobe , vol.28 , pp. 157-162
    • Park, S.J.1    Kim, J.2    Lee, J.S.3    Rhee, S.K.4    Kim, H.5
  • 25
    • 84902593633 scopus 로고    scopus 로고
    • Metabolic profiling of somatic tissues from Monochamus alternatus (Coleoptera: Cerambycidae) reveals effects of irradiation on metabolism
    • Qu, L., Wang, L., Wang, Q., Wang, Y. and Zhang, Y. (2014) Metabolic profiling of somatic tissues from Monochamus alternatus (Coleoptera: Cerambycidae) reveals effects of irradiation on metabolism. Int J Mol Sci 15, 10806-10820.
    • (2014) Int J Mol Sci , vol.15 , pp. 10806-10820
    • Qu, L.1    Wang, L.2    Wang, Q.3    Wang, Y.4    Zhang, Y.5
  • 26
    • 84891354359 scopus 로고    scopus 로고
    • Effect of dietary protein supply originating from soybean meal or casein on the intestinal microbiota of piglets
    • Rist, V.T.S., Weiss, E., Sauer, N., Mosenthin, R. and Eklund, M. (2014) Effect of dietary protein supply originating from soybean meal or casein on the intestinal microbiota of piglets. Anaerobe 25, 72-79.
    • (2014) Anaerobe , vol.25 , pp. 72-79
    • Rist, V.T.S.1    Weiss, E.2    Sauer, N.3    Mosenthin, R.4    Eklund, M.5
  • 27
    • 79952422304 scopus 로고    scopus 로고
    • Quality control and preprocessing of metagenomic datasets
    • Schmieder, R. and Edwards, R. (2011) Quality control and preprocessing of metagenomic datasets. Bioinformatics 27, 863-864.
    • (2011) Bioinformatics , vol.27 , pp. 863-864
    • Schmieder, R.1    Edwards, R.2
  • 29
    • 79952748287 scopus 로고    scopus 로고
    • Unravelling the effects of the environment and host genotype on the gut microbiome
    • Spor, A., Koren, O. and Ley, R. (2011) Unravelling the effects of the environment and host genotype on the gut microbiome. Nat Rev Microbiol 9, 279-290.
    • (2011) Nat Rev Microbiol , vol.9 , pp. 279-290
    • Spor, A.1    Koren, O.2    Ley, R.3
  • 30
    • 77949272223 scopus 로고    scopus 로고
    • Fermented liquid feed enhances bacterial diversity in piglet intestine
    • Tajima, K., Ohmori, H., Aminov, R.I., Kobashi, Y. and Kawashima, T. (2010) Fermented liquid feed enhances bacterial diversity in piglet intestine. Anaerobe 16, 6-11.
    • (2010) Anaerobe , vol.16 , pp. 6-11
    • Tajima, K.1    Ohmori, H.2    Aminov, R.I.3    Kobashi, Y.4    Kawashima, T.5
  • 31
    • 0043061520 scopus 로고    scopus 로고
    • The ileal amino acid digestibility of different protein sources for early-weaned piglets
    • Viljoen, J., Coetzee, S.E., Fick, J.C., Siebrits, F.K. and Hayes, J.P. (1998) The ileal amino acid digestibility of different protein sources for early-weaned piglets. Livest Prod Sci 54, 45-53.
    • (1998) Livest Prod Sci , vol.54 , pp. 45-53
    • Viljoen, J.1    Coetzee, S.E.2    Fick, J.C.3    Siebrits, F.K.4    Hayes, J.P.5
  • 32
    • 84889090313 scopus 로고    scopus 로고
    • Diet, the human gut microbiota, and IBD
    • Wu, G.D., Bushmanc, F.D. and Lewis, J.D. (2013) Diet, the human gut microbiota, and IBD. Anaerobe 24, 117-120.
    • (2013) Anaerobe , vol.24 , pp. 117-120
    • Wu, G.D.1    Bushmanc, F.D.2    Lewis, J.D.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.