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Volumn 39, Issue 7, 2016, Pages 697-707

Linking MedDRA®-Coded Clinical Phenotypes to Biological Mechanisms by the Ontology of Adverse Events: A Pilot Study on Tyrosine Kinase Inhibitors

Author keywords

[No Author keywords available]

Indexed keywords

CETUXIMAB; DASATINIB; IMATINIB; LAPATINIB; MONOCLONAL ANTIBODY; PROTEIN TYROSINE KINASE INHIBITOR; TRASTUZUMAB; PROTEIN KINASE INHIBITOR;

EID: 84961839097     PISSN: 01145916     EISSN: 11791942     Source Type: Journal    
DOI: 10.1007/s40264-016-0414-0     Document Type: Article
Times cited : (20)

References (38)
  • 1
    • 84861371318 scopus 로고    scopus 로고
    • Needs for an expanded ontology-based classification of adverse drug reactions and related mechanisms
    • COI: 1:CAS:528:DC%2BC38XnsFGnsLw%3D, PID: 22609907
    • Zhichkin PE, Athey BD, Avigan MI, Abernethy DR. Needs for an expanded ontology-based classification of adverse drug reactions and related mechanisms. Clin Pharmacol Ther. 2012;91(6):963–5.
    • (2012) Clin Pharmacol Ther , vol.91 , Issue.6 , pp. 963-965
    • Zhichkin, P.E.1    Athey, B.D.2    Avigan, M.I.3    Abernethy, D.R.4
  • 3
    • 84954358609 scopus 로고    scopus 로고
    • The human phenotype ontology: a tool for annotating and analyzing human hereditary disease
    • COI: 1:CAS:528:DC%2BD1cXhtlyjsrnI, PID: 18950739
    • Robinson PN, Köhler S, Bauer S, Seelow D, Horn D, Mundlos S. The human phenotype ontology: a tool for annotating and analyzing human hereditary disease. Am J Hum Genet. 2008;83(5):610–5.
    • (2008) Am J Hum Genet. , vol.83 , Issue.5 , pp. 610-615
    • Robinson, P.N.1    Köhler, S.2    Bauer, S.3    Seelow, D.4    Horn, D.5    Mundlos, S.6
  • 4
    • 33744793443 scopus 로고    scopus 로고
    • Evaluation of the content coverage of SNOMED CT: ability of SNOMED clinical terms to represent clinical problem lists
    • PID: 16770974
    • Elkin PL, Brown SH, Husser CS, Bauer BA, Wahner-Roedler D, Rosenbloom ST, et al. Evaluation of the content coverage of SNOMED CT: ability of SNOMED clinical terms to represent clinical problem lists. Mayo Clin Proc. 2006;81(6):741–8.
    • (2006) Mayo Clin Proc , vol.81 , Issue.6 , pp. 741-748
    • Elkin, P.L.1    Brown, S.H.2    Husser, C.S.3    Bauer, B.A.4    Wahner-Roedler, D.5    Rosenbloom, S.T.6
  • 6
    • 33846228931 scopus 로고    scopus 로고
    • The NCI Common Terminology Criteria for Adverse Events (CTCAE) v 3.0 is the new standard for oncology clinical trials
    • Colevas A, Setser A. The NCI Common Terminology Criteria for Adverse Events (CTCAE) v 3.0 is the new standard for oncology clinical trials. J Clin Oncol. 2004;22(14S):6098.
    • (2004) J Clin Oncol , vol.22 , Issue.14S , pp. 6098
    • Colevas, A.1    Setser, A.2
  • 8
    • 79958778826 scopus 로고    scopus 로고
    • An evolutionary approach to realism-based adverse event representations
    • COI: 1:STN:280:DC%2BC3M7gslGltA%3D%3D, PID: 21057717
    • Ceusters W, Capolupo M, De Moor G, Devlies J, Smith B. An evolutionary approach to realism-based adverse event representations. Methods Inf Med. 2011;50(1):62.
    • (2011) Methods Inf Med , vol.50 , Issue.1 , pp. 62
    • Ceusters, W.1    Capolupo, M.2    De Moor, G.3    Devlies, J.4    Smith, B.5
  • 11
    • 77954089683 scopus 로고    scopus 로고
    • Basic formal ontology for bioinformatics
    • Smith B, Kumar A, Bittner T. Basic formal ontology for bioinformatics. J Inf Syst 2005:1–16. https://www.researchgate.net/profile/Barry_Smith4/publication/240744641_Basic_Formal_Ontology_for_Bioinformatics/links/0c96052e01c2e8c835000000.pdf. Accessed 15 Feb 2016.
    • (2005) J Inf Syst , pp. 1-16
    • Smith, B.1    Kumar, A.2    Bittner, T.3
  • 12
    • 84937523757 scopus 로고    scopus 로고
    • The human phenotype ontology: semantic unification of common and rare disease
    • COI: 1:CAS:528:DC%2BC2MXhtV2itb3F, PID: 26119816
    • Groza T, Köhler S, Moldenhauer D, Vasilevsky N, Baynam G, Zemojtel T, et al. The human phenotype ontology: semantic unification of common and rare disease. Am J Hum Genet. 2015;97(1):111–24.
    • (2015) Am J Hum Genet , vol.97 , Issue.1 , pp. 111-124
    • Groza, T.1    Köhler, S.2    Moldenhauer, D.3    Vasilevsky, N.4    Baynam, G.5    Zemojtel, T.6
  • 13
    • 26844450908 scopus 로고    scopus 로고
    • The mammalian phenotype ontology as a tool for annotating, analyzing and comparing phenotypic information
    • PID: 15642099
    • Smith CL, Goldsmith CA, Eppig JT. The mammalian phenotype ontology as a tool for annotating, analyzing and comparing phenotypic information. Genome Biol. 2005;6(1):R7.
    • (2005) Genome Biol , vol.6 , Issue.1 , pp. R7
    • Smith, C.L.1    Goldsmith, C.A.2    Eppig, J.T.3
  • 14
    • 84859699832 scopus 로고    scopus 로고
    • Disease Ontology: a backbone for disease semantic integration
    • COI: 1:CAS:528:DC%2BC3MXhs12hur7O, PID: 22080554
    • Schriml LM, Arze C, Nadendla S, Chang Y-WW, Mazaitis M, Felix V, et al. Disease Ontology: a backbone for disease semantic integration. Nucleic Acids Res. 2012;40(D1):D940–6.
    • (2012) Nucleic Acids Res , vol.40 , Issue.D1 , pp. D940-D946
    • Schriml, L.M.1    Arze, C.2    Nadendla, S.3    Chang, Y.-W.W.4    Mazaitis, M.5    Felix, V.6
  • 16
    • 77951973818 scopus 로고    scopus 로고
    • Modeling sample variables with an experimental factor ontology
    • COI: 1:CAS:528:DC%2BC3cXkvVOqs78%3D, PID: 20200009
    • Malone J, Holloway E, Adamusiak T, Kapushesky M, Zheng J, Kolesnikov N, et al. Modeling sample variables with an experimental factor ontology. Bioinformatics. 2010;26(8):1112–8.
    • (2010) Bioinformatics , vol.26 , Issue.8 , pp. 1112-1118
    • Malone, J.1    Holloway, E.2    Adamusiak, T.3    Kapushesky, M.4    Zheng, J.5    Kolesnikov, N.6
  • 17
    • 84870367610 scopus 로고    scopus 로고
    • Ontology-based combinatorial comparative analysis of adverse events associated with killed and live influenza vaccines
    • COI: 1:CAS:528:DC%2BC38XhvVGjtr%2FL, PID: 23209624
    • Sarntivijai S, Xiang Z, Shedden KA, Markel H, Omenn GS, Athey BD, et al. Ontology-based combinatorial comparative analysis of adverse events associated with killed and live influenza vaccines. PLoS One. 2012;7(11):e49941.
    • (2012) PLoS One , vol.7 , Issue.11 , pp. e49941
    • Sarntivijai, S.1    Xiang, Z.2    Shedden, K.A.3    Markel, H.4    Omenn, G.S.5    Athey, B.D.6
  • 18
    • 84881179119 scopus 로고    scopus 로고
    • Ontology-based time information representation of vaccine adverse events in VAERS for temporal analysis
    • Tao C, He Y, Yang H, Poland GA, Chute CG. Ontology-based time information representation of vaccine adverse events in VAERS for temporal analysis. J Biomed Semant. 2012;3(1):13.
    • (2012) J Biomed Semant. , vol.3 , Issue.1 , pp. 13
    • Tao, C.1    He, Y.2    Yang, H.3    Poland, G.A.4    Chute, C.G.5
  • 19
    • 84927918683 scopus 로고    scopus 로고
    • The ontology of genetic susceptibility factors (OGSF) and its application in modeling genetic susceptibility to vaccine adverse events
    • Lin Y, He Y. The ontology of genetic susceptibility factors (OGSF) and its application in modeling genetic susceptibility to vaccine adverse events. J Biomed Semant. 2014;5:19.
    • (2014) J Biomed Semant. , vol.5 , pp. 19
    • Lin, Y.1    He, Y.2
  • 20
    • 84891757848 scopus 로고    scopus 로고
    • The ontology of vaccine adverse events (OVAE) and its usage in representing and analyzing adverse events associated with US-licensed human vaccines
    • Marcos E, Zhao B, He Y. The ontology of vaccine adverse events (OVAE) and its usage in representing and analyzing adverse events associated with US-licensed human vaccines. J Biomed Semant. 2013;4(1):40.
    • (2013) J Biomed Semant. , vol.4 , Issue.1 , pp. 40
    • Marcos, E.1    Zhao, B.2    He, Y.3
  • 21
    • 34247480545 scopus 로고    scopus 로고
    • Molecular mechanisms of cardiotoxicity of tyrosine kinase inhibition
    • COI: 1:CAS:528:DC%2BD2sXksFSiu7w%3D, PID: 17457301
    • Force T, Krause DS, Van Etten RA. Molecular mechanisms of cardiotoxicity of tyrosine kinase inhibition. Nat Rev Cancer. 2007;7(5):332–44.
    • (2007) Nat Rev Cancer , vol.7 , Issue.5 , pp. 332-344
    • Force, T.1    Krause, D.S.2    Van Etten, R.A.3
  • 22
    • 51249084565 scopus 로고    scopus 로고
    • Cardiotoxicity of the new cancer therapeutics—mechanisms of, and approaches to, the problem
    • COI: 1:CAS:528:DC%2BD1cXhtFaisb3O, PID: 18617014
    • Force T, Kerkelä R. Cardiotoxicity of the new cancer therapeutics—mechanisms of, and approaches to, the problem. Drug Discov Today. 2008;13(17):778–84.
    • (2008) Drug Discov Today , vol.13 , Issue.17 , pp. 778-784
    • Force, T.1    Kerkelä, R.2
  • 23
    • 79551610758 scopus 로고    scopus 로고
    • Cardiotoxicity of kinase inhibitors: the prediction and translation of preclinical models to clinical outcomes
    • COI: 1:CAS:528:DC%2BC3MXhtlektrg%3D, PID: 21283106
    • Force T, Kolaja KL. Cardiotoxicity of kinase inhibitors: the prediction and translation of preclinical models to clinical outcomes. Nat Rev Drug Discov. 2011;10(2):111–26.
    • (2011) Nat Rev Drug Discov , vol.10 , Issue.2 , pp. 111-126
    • Force, T.1    Kolaja, K.L.2
  • 24
    • 84975624866 scopus 로고    scopus 로고
    • US National Library of Medicine. [cited 2014]. Available from:.
    • US National Library of Medicine. MedlinePlus [Internet] 2005 [cited 2014]. Available from: https://www.nlm.nih.gov/medlineplus/.
    • (2005) MedlinePlus [Internet]
  • 25
    • 35948989284 scopus 로고    scopus 로고
    • The OBO foundry: coordinated evolution of ontologies to support biomedical data integration
    • COI: 1:CAS:528:DC%2BD2sXht1Oru7zK, PID: 17989687
    • Smith B, Ashburner M, Rosse C, Bard J, Bug W, Ceusters W, et al. The OBO foundry: coordinated evolution of ontologies to support biomedical data integration. Nat Biotechnol. 2007;25(11):1251–5.
    • (2007) Nat Biotechnol , vol.25 , Issue.11 , pp. 1251-1255
    • Smith, B.1    Ashburner, M.2    Rosse, C.3    Bard, J.4    Bug, W.5    Ceusters, W.6
  • 26
    • 84938774642 scopus 로고    scopus 로고
    • Ontorat: automatic generation of new ontology terms, annotations, and axioms based on ontology design patterns
    • Xiang Z, Zheng J, Lin Y, He Y. Ontorat: automatic generation of new ontology terms, annotations, and axioms based on ontology design patterns. J Biomed Semant. 2015;6:4.
    • (2015) J Biomed Semant. , vol.6 , pp. 4
    • Xiang, Z.1    Zheng, J.2    Lin, Y.3    He, Y.4
  • 30
    • 77949622215 scopus 로고    scopus 로고
    • Function, role, and disposition in basic formal ontology
    • Arp R, Smith B. Function, role, and disposition in basic formal ontology. Nat Precedings. 2008;1941(1):1–4.
    • (2008) Nat Precedings. , vol.1941 , Issue.1 , pp. 1-4
    • Arp, R.1    Smith, B.2
  • 31
    • 0346801873 scopus 로고    scopus 로고
    • The gene ontology (GO) database and informatics resource
    • COI: 1:STN:280:DC%2BD3srpvFyhtw%3D%3D, PID: 14681407
    • Harris MA, Clark J, Ireland A, Gene Ontology Consortium, et al. The gene ontology (GO) database and informatics resource. Nucleic Acids Res. 2004;32(Suppl 1):D258–61.
    • (2004) Nucleic Acids Res , vol.32 , pp. D258-D261
    • Harris, M.A.1    Clark, J.2    Ireland, A.3    Gene Ontology Consortium4
  • 34
    • 84872524577 scopus 로고    scopus 로고
    • An Information artifact ontology perspective on data collections and associated representational artifacts
    • Ceusters W. An Information artifact ontology perspective on data collections and associated representational artifacts. Stud Health Technol Inf. 2012;180:68–72.
    • (2012) Stud Health Technol Inf. , vol.180 , pp. 68-72
    • Ceusters, W.1
  • 38
    • 84987680729 scopus 로고    scopus 로고
    • Standardized description of scientific evidence using the evidence ontology (ECO)
    • Chibucos MC, Mungall CJ, Balakrishnan R, Christie KR, Huntley RP, White O, et al. Standardized description of scientific evidence using the evidence ontology (ECO). Database (Oxford). 2014. doi:10.1093/database/bau075. http://m.database.oxfordjournals.org/content/2014/bau075.long. Accessed 15 Feb 2016.
    • (2014) Database (Oxford)
    • Chibucos, M.C.1    Mungall, C.J.2    Balakrishnan, R.3    Christie, K.R.4    Huntley, R.P.5    White, O.6


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