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Volumn 5, Issue 1, 2014, Pages

The ontology of genetic susceptibility factors (OGSF) and its application in modeling genetic susceptibility to vaccine adverse events

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EID: 84927918683     PISSN: None     EISSN: 20411480     Source Type: Journal    
DOI: 10.1186/2041-1480-5-19     Document Type: Article
Times cited : (15)

References (59)
  • 1
    • 84927920458 scopus 로고    scopus 로고
    • NCI Dictionary of Genetic Terms. http://www.cancer.gov/geneticsdictionary? cdrid=256553.
  • 2
    • 84857190262 scopus 로고    scopus 로고
    • Human genetic susceptibility to infectious disease
    • Chapman SJ, Hill AV: Human genetic susceptibility to infectious disease. Nat Rev Genet 2012, 13(3):175-188.
    • (2012) Nat Rev Genet , vol.13 , Issue.3 , pp. 175-188
    • Chapman, S.J.1    Hill, A.V.2
  • 3
    • 84856158121 scopus 로고    scopus 로고
    • An overview of the genetic susceptibility to alcoholism
    • Buscemi L, Turchi C: An overview of the genetic susceptibility to alcoholism. Med Sci Law 2011, 51(Suppl 1):S2-S6.
    • (2011) Med Sci Law , vol.51 , pp. S2-S6
    • Buscemi, L.1    Turchi, C.2
  • 4
    • 83455242881 scopus 로고    scopus 로고
    • Genetic susceptibility to pancreatic cancer
    • Klein AP: Genetic susceptibility to pancreatic cancer. Mol Carcinog 2012, 51(1):14-24.
    • (2012) Mol Carcinog , vol.51 , Issue.1 , pp. 14-24
    • Klein, A.P.1
  • 5
    • 78349272440 scopus 로고    scopus 로고
    • Genetic susceptibility to autoimmune thyroid disease: past, present, and future
    • Tomer Y: Genetic susceptibility to autoimmune thyroid disease: past, present, and future. Thyroid 2010, 20(7):715-725.
    • (2010) Thyroid , vol.20 , Issue.7 , pp. 715-725
    • Tomer, Y.1
  • 6
    • 67649550233 scopus 로고    scopus 로고
    • Adversomics: the emerging field of vaccine adverse event immunogenetics
    • Poland GA, Ovsyannikova IG, Jacobson RM: Adversomics: the emerging field of vaccine adverse event immunogenetics. Pediatr Infect Dis J 2009, 28(5):431-432.
    • (2009) Pediatr Infect Dis J , vol.28 , Issue.5 , pp. 431-432
    • Poland, G.A.1    Ovsyannikova, I.G.2    Jacobson, R.M.3
  • 8
    • 84891757848 scopus 로고    scopus 로고
    • The Ontology of Vaccine Adverse Events (OVAE) and its usage in representing and analyzing adverse events associated with US-licensed human vaccines
    • Marcos E, Zhao B, He Y: The Ontology of Vaccine Adverse Events (OVAE) and its usage in representing and analyzing adverse events associated with US-licensed human vaccines. J Biomed Semantics 2013, 4:40.
    • (2013) J Biomed Semantics , vol.4 , pp. 40
    • Marcos, E.1    Zhao, B.2    He, Y.3
  • 10
    • 49149115499 scopus 로고    scopus 로고
    • Dictionary of pharmacovigilance.
    • London; Chicago: Pharmaceutical Press
    • Alghabban A: Dictionary of pharmacovigilance. London; Chicago: Pharmaceutical Press; 2004.
    • (2004)
    • Alghabban, A.1
  • 11
    • 84930582158 scopus 로고    scopus 로고
    • Human molecular genetics 3.
    • 3rd edition. New York; London
    • Strachan T, Read AP: Human molecular genetics 3. 3rd edition. New York; London: Garland Science; 2004.
    • (2004) Garland Science
    • Strachan, T.1    Read, A.P.2
  • 12
    • 36148964050 scopus 로고    scopus 로고
    • Heterogeneity in vaccine immune response: the role of immunogenetics and the emerging field of vaccinomics
    • Poland GA, Ovsyannikova IG, Jacobson RM, Smith DI: Heterogeneity in vaccine immune response: the role of immunogenetics and the emerging field of vaccinomics. Clin Pharmacol Ther 2007, 82(6):653-664.
    • (2007) Clin Pharmacol Ther , vol.82 , Issue.6 , pp. 653-664
    • Poland, G.A.1    Ovsyannikova, I.G.2    Jacobson, R.M.3    Smith, D.I.4
  • 13
    • 84927932861 scopus 로고    scopus 로고
    • Meta-Analysis of Genome-Wide Association Studies
    • Genetics of complex human diseases: a laboratory manual. 1 Lab editionth edition. Edited by Al-Chalabi A, Almasy L. Cold Spring Harbor Laboratory Press
    • de Bakker PIW, Neale BM, Daly MJ: Meta-Analysis of Genome-Wide Association Studies. In Genetics of complex human diseases: a laboratory manual. 1 Lab editionth edition. Edited by Al-Chalabi A, Almasy L. Cold Spring Harbor Laboratory Press; 2009. http://cshprotocols.cshlp.org/content/ 2010/6/pdb.top81.abstract.
    • (2009)
    • de Bakker, P.I.W.1    Neale, B.M.2    Daly, M.J.3
  • 14
    • 75749089722 scopus 로고    scopus 로고
    • Ontology driven modeling for the knowledge of genetic susceptibility to disease
    • Lin Y, Sakamoto N: Ontology driven modeling for the knowledge of genetic susceptibility to disease. Kobe J Med Sci 2009, 55(3):E53-E66.
    • (2009) Kobe J Med Sci , vol.55 , Issue.3 , pp. E53-E66
    • Lin, Y.1    Sakamoto, N.2
  • 15
    • 84927946709 scopus 로고
    • The genetic basis of susceptibility to tissue transplants
    • Strong LC: The genetic basis of susceptibility to tissue transplants. Proc Natl Acad Sci U S A 1926, 12(3):181-186.
    • (1926) Proc Natl Acad Sci U S A , vol.12 , Issue.3 , pp. 181-186
    • Strong, L.C.1
  • 18
    • 84927917787 scopus 로고    scopus 로고
    • GAZ Ontology Project
    • Michael A, Lynn S: GAZ Ontology Project. http://wiki.gensc.org/index.php? title=GAZ_Project.
    • Michael, A.1    Lynn, S.2
  • 19
    • 84870367610 scopus 로고    scopus 로고
    • Ontology-based combinatorial comparative analysis of adverse events associated with killed and live influenza vaccines
    • Sarntivijai S, Xiang Z, Shedden KA, Markel H, Omenn GS, Athey BD, He Y: Ontology-based combinatorial comparative analysis of adverse events associated with killed and live influenza vaccines. PLoS One 2012, 7(11):e49941.
    • (2012) PLoS One , vol.7 , Issue.11 , pp. e49941
    • Sarntivijai, S.1    Xiang, Z.2    Shedden, K.A.3    Markel, H.4    Omenn, G.S.5    Athey, B.D.6    He, Y.7
  • 20
    • 84891932125 scopus 로고    scopus 로고
    • AEO: a realism-based biomedical ontology for the representation of adverse events
    • Adverse Event Representation Workshop, International Conference on Biomedical Ontologies (ICBO). Buffalo, NY: Ceur-ws.org
    • He Y, Xiang Z, Samtivijai S, Toldo L, Ceusters W: AEO: a realism-based biomedical ontology for the representation of adverse events. In Adverse Event Representation Workshop, International Conference on Biomedical Ontologies (ICBO). Buffalo, NY: Ceur-ws.org; 2011:309-315.
    • (2011) , pp. 309-315
    • He, Y.1    Xiang, Z.2    Samtivijai, S.3    Toldo, L.4    Ceusters, W.5
  • 23
    • 84887118225 scopus 로고    scopus 로고
    • Ontology representation and analysis of vaccine formulation and administration and their effects on vaccine immune responses
    • Lin Y, He Y: Ontology representation and analysis of vaccine formulation and administration and their effects on vaccine immune responses. J Biomed Semantics 2012, 3(1):17.
    • (2012) J Biomed Semantics , vol.3 , Issue.1 , pp. 17
    • Lin, Y.1    He, Y.2
  • 24
    • 84927916866 scopus 로고    scopus 로고
    • BFO2 reference. http://purl.obolibrary.org/obo/bfo/2012-07-20/Reference.
  • 27
    • 79952015982 scopus 로고    scopus 로고
    • Evolution of the Sequence Ontology terms and relationships
    • Mungall CJ, Batchelor C, Eilbeck K: Evolution of the Sequence Ontology terms and relationships. J Biomed Inform 2011, 44(1):87-93.
    • (2011) J Biomed Inform , vol.44 , Issue.1 , pp. 87-93
    • Mungall, C.J.1    Batchelor, C.2    Eilbeck, K.3
  • 29
    • 84883703363 scopus 로고    scopus 로고
    • Variation between populations in the innate immune response to vaccine adjuvants
    • Kollmann TR: Variation between populations in the innate immune response to vaccine adjuvants. Front Immunol 2013, 4:81.
    • (2013) Front Immunol , vol.4 , pp. 81
    • Kollmann, T.R.1
  • 31
    • 0033202726 scopus 로고    scopus 로고
    • Detection of gene-environment interaction by case-only studies
    • Hamajima N, Yuasa H, Matsuo K, Kurobe Y: Detection of gene-environment interaction by case-only studies. Jpn J Clin Oncol 1999, 29(10):490-493.
    • (1999) Jpn J Clin Oncol , vol.29 , Issue.10 , pp. 490-493
    • Hamajima, N.1    Yuasa, H.2    Matsuo, K.3    Kurobe, Y.4
  • 32
    • 7244251643 scopus 로고    scopus 로고
    • Further development of the case-only design for assessing gene-environment interaction: evaluation of and adjustment for bias
    • Gatto NM, Campbell UB, Rundle AG, Ahsan H: Further development of the case-only design for assessing gene-environment interaction: evaluation of and adjustment for bias. Int J Epidemiol 2004, 33(5):1014-1024.
    • (2004) Int J Epidemiol , vol.33 , Issue.5 , pp. 1014-1024
    • Gatto, N.M.1    Campbell, U.B.2    Rundle, A.G.3    Ahsan, H.4
  • 33
    • 84866041106 scopus 로고    scopus 로고
    • A patient with both narcolepsy and multiple sclerosis in association with Pandemrix vaccination
    • Vrethem M, Malmgren K, Lindh J: A patient with both narcolepsy and multiple sclerosis in association with Pandemrix vaccination. J Neurol Sci 2012, 321(1-2):89-91.
    • (2012) J Neurol Sci , vol.321 , Issue.1-2 , pp. 89-91
    • Vrethem, M.1    Malmgren, K.2    Lindh, J.3
  • 38
    • 84927919023 scopus 로고    scopus 로고
    • SPARQL query language for RDF. http://www.w3.org/TR/rdf-sparql-query/.
  • 39
    • 84916232711 scopus 로고    scopus 로고
    • OWL 2 Web Ontology Language Quick Reference Guide (Second Edition)
    • W3C Recommendation 11 December 2012
    • W3C: OWL 2 Web Ontology Language Quick Reference Guide (Second Edition), W3C Recommendation 11 December 2012; 2012. http://www.w3.org/TR/owl2- quick-reference/.
    • (2012)
  • 40
    • 84891912997 scopus 로고    scopus 로고
    • Ontobee: A Linked Data Server and Browser for Ontology Terms.
    • Buffalo, NY, USA: CEUR Workshop Proceedings
    • Xiang Z, Mungall C, Ruttenberg A, He Y: Ontobee: A Linked Data Server and Browser for Ontology Terms. In the 2nd International Conference on Biomedical Ontologies (ICBO). Buffalo, NY, USA: CEUR Workshop Proceedings, ISSN 1613-0073; 2011:279-281. available on: http://ceur-ws.org/Vol-833/ paper48.pdf.
    • (2011) the 2nd International Conference on Biomedical Ontologies (ICBO) , pp. 279-281
    • Xiang, Z.1    Mungall, C.2    Ruttenberg, A.3    He, Y.4
  • 41
    • 79960028139 scopus 로고    scopus 로고
    • Computer-assisted update of a consumer health vocabulary through mining of social network data
    • Doing-Harris KM, Zeng-Treitler Q: Computer-assisted update of a consumer health vocabulary through mining of social network data. J Med Internet Res 2011, 13(2):e37.
    • (2011) J Med Internet Res , vol.13 , Issue.2 , pp. e37
    • Doing-Harris, K.M.1    Zeng-Treitler, Q.2
  • 43
    • 80052697346 scopus 로고    scopus 로고
    • Mining of vaccine-associated IFN-gamma gene interaction networks using the Vaccine Ontology
    • Ozgur A, Xiang Z, Radev DR, He Y: Mining of vaccine-associated IFN-gamma gene interaction networks using the Vaccine Ontology. J Biomed Semantics 2011, 2(2):S8.
    • (2011) J Biomed Semantics , vol.2 , Issue.2 , pp. S8
    • Ozgur, A.1    Xiang, Z.2    Radev, D.R.3    He, Y.4
  • 44
    • 84891611356 scopus 로고    scopus 로고
    • OntoGraf
    • Falconer S: OntoGraf. http://protegewiki.stanford.edu/wiki/OntoGraf.
    • Falconer, S.1
  • 45
    • 77954252246 scopus 로고    scopus 로고
    • Gephi: an open source software for exploring and manipulating networks
    • International AAAI Conference on Weblogs and Social Media
    • Bastian M, Heymann S, Jacomy M: Gephi: an open source software for exploring and manipulating networks. In International AAAI Conference on Weblogs and Social Media; 2009.
    • (2009)
    • Bastian, M.1    Heymann, S.2    Jacomy, M.3
  • 46
    • 33750177351 scopus 로고
    • Centrality in social networks conceptual clarification
    • Freeman LC: Centrality in social networks conceptual clarification. Soc Networks 1979, 1(3):215-239.
    • (1979) Soc Networks , vol.1 , Issue.3 , pp. 215-239
    • Freeman, L.C.1
  • 47
    • 4243148480 scopus 로고    scopus 로고
    • Authoritative sources in a hyperlinked environment
    • Kleinberg JM: Authoritative sources in a hyperlinked environment. J Acm 1999, 46(5):604-632.
    • (1999) J Acm , vol.46 , Issue.5 , pp. 604-632
    • Kleinberg, J.M.1
  • 50
    • 84858779229 scopus 로고    scopus 로고
    • HaploReg: a resource for exploring chromatin states, conservation, and regulatory motif alterations within sets of genetically linked variants
    • Ward LD, Kellis M: HaploReg: a resource for exploring chromatin states, conservation, and regulatory motif alterations within sets of genetically linked variants. Nucleic Acids Res 2012, 40(Database issue):D930-D934.
    • (2012) Nucleic Acids Res , vol.40 , Issue.Database issue , pp. D930-D934
    • Ward, L.D.1    Kellis, M.2
  • 52
    • 82255186347 scopus 로고    scopus 로고
    • Searching and browsing Linked Data with SWSE: The Semantic Web Search Engine
    • Hogan A, Harth A, Umbrich J, Kinsella S, Polleres A, Decker S: Searching and browsing Linked Data with SWSE: The Semantic Web Search Engine. J Web Semant 2011, 9(4):365-401.
    • (2011) J Web Semant , vol.9 , Issue.4 , pp. 365-401
    • Hogan, A.1    Harth, A.2    Umbrich, J.3    Kinsella, S.4    Polleres, A.5    Decker, S.6
  • 54
    • 84861063896 scopus 로고    scopus 로고
    • SNPedia: a wiki supporting personal genome annotation, interpretation and analysis
    • Cariaso M, Lennon G: SNPedia: a wiki supporting personal genome annotation, interpretation and analysis. Nucleic Acids Res 2012, 40(Database issue):D1308-D1312.
    • (2012) Nucleic Acids Res , vol.40 , Issue.Database issue , pp. D1308-D1312
    • Cariaso, M.1    Lennon, G.2
  • 57
    • 33847126236 scopus 로고    scopus 로고
    • Spatio-temporality in Basic Formal Ontology
    • IFOMIS reports. Edited by Grenon P. Leipzig: Institute for Formal Ontology and Medical Information Science at the Faculty of Medicine of the University of Leipzig
    • Grenon P: Spatio-temporality in Basic Formal Ontology. In IFOMIS reports. Edited by Grenon P. Leipzig: Institute for Formal Ontology and Medical Information Science at the Faculty of Medicine of the University of Leipzig; 2003:89.
    • (2003) , pp. 89
    • Grenon, P.1
  • 59
    • 0035648637 scopus 로고    scopus 로고
    • A faster algorithm for betweenness centrality
    • Brandes U: A faster algorithm for betweenness centrality. J Math Sociol 2001, 25(2):163-177.
    • (2001) J Math Sociol , vol.25 , Issue.2 , pp. 163-177
    • Brandes, U.1


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