-
1
-
-
78149443620
-
Bacterial contact-dependent delivery systems
-
Hayes, C.S., Aoki, S.K., & Low, D.A. Bacterial contact-dependent delivery systems. Annu. Rev. Genet. 44, 71-90 (2010
-
(2010)
Annu. Rev. Genet
, vol.44
, pp. 71-90
-
-
Hayes, C.S.1
Aoki, S.K.2
Low, D.A.3
-
2
-
-
0030200018
-
The molecular ecology of legionellae
-
Fields, B.S. The molecular ecology of legionellae. Trends Microbiol. 4, 286-290 (1996
-
(1996)
Trends Microbiol
, vol.4
, pp. 286-290
-
-
Fields, B.S.1
-
3
-
-
0036314980
-
Legionella and Legionnaires? Disease: 25 years of investigation
-
Fields, B.S., Benson, R.F., & Besser, R.E. Legionella and Legionnaires? disease: 25 years of investigation. Clin. Microbiol. Rev. 15, 506-526 (2002
-
(2002)
Clin. Microbiol. Rev
, vol.15
, pp. 506-526
-
-
Fields, B.S.1
Benson, R.F.2
Besser, R.E.3
-
4
-
-
37149000256
-
Legionella spp and Legionnaires? Disease
-
Diederen, B.M.W. Legionella spp. and Legionnaires? disease. J. Infect. 56, 1-12 (2008
-
(2008)
J. Infect
, vol.56
, pp. 1-12
-
-
Diederen, B.M.W.1
-
5
-
-
0032539674
-
Host cell killing and bacterial conjugation require overlapping sets of genes within a 22-kb region of the Legionella pneumophila genome
-
Segal, G., Purcell, M., & Shuman, H.A. Host cell killing and bacterial conjugation require overlapping sets of genes within a 22-kb region of the Legionella pneumophila genome. Proc. Natl. Acad. Sci. USA 95, 1669-1674 (1998
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 1669-1674
-
-
Segal, G.1
Purcell, M.2
Shuman, H.A.3
-
6
-
-
0032488861
-
Conjugative transfer by the virulence system of Legionella pneumophila
-
Vogel, J.P., Andrews, H.L., Wong, S.K., & Isberg, R.R. Conjugative transfer by the virulence system of Legionella pneumophila. Science 279, 873-876 (1998
-
(1998)
Science
, vol.279
, pp. 873-876
-
-
Vogel, J.P.1
Andrews, H.L.2
Wong, S.K.3
Isberg, R.R.4
-
7
-
-
57649149094
-
The Legionella pneumophila replication vacuole: Making a cosy niche inside host cells
-
Isberg, R.R., O'Connor, T.J., & Heidtman, M. The Legionella pneumophila replication vacuole: making a cosy niche inside host cells. Nat. Rev. Microbiol. 7, 13-24 (2009
-
(2009)
Nat. Rev. Microbiol
, vol.7
, pp. 13-24
-
-
Isberg, R.R.1
O'Connor, T.J.2
Heidtman, M.3
-
8
-
-
24744441905
-
Coevolution between nonhomologous but functionally similar proteins and their conserved partners in the Legionella pathogenesis system
-
Feldman, M., Zusman, T., Hagag, S., & Segal, G. Coevolution between nonhomologous but functionally similar proteins and their conserved partners in the Legionella pathogenesis system. Proc. Natl. Acad. Sci. USA 102, 12206-12211 (2005
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 12206-12211
-
-
Feldman, M.1
Zusman, T.2
Hagag, S.3
Segal, G.4
-
9
-
-
3343000034
-
A specific genomic location within the icm/dot pathogenesis region of different Legionella species encodes functionally similar but nonhomologous virulence proteins
-
Feldman, M., & Segal, G A specific genomic location within the icm/dot pathogenesis region of different Legionella species encodes functionally similar but nonhomologous virulence proteins. Infect. Immun. 72, 4503-4511 (2004
-
(2004)
Infect. Immun
, vol.72
, pp. 4503-4511
-
-
Feldman, M.1
Segal, G.2
-
10
-
-
80052630257
-
Dot/Icm type IVB secretion system requirements for Coxiella burnetii growth in human macrophages
-
Beare P.A., et al. Dot/Icm type IVB secretion system requirements for Coxiella burnetii growth in human macrophages. MBio 2, e00175-11 (2011
-
(2011)
MBio
, vol.2
, pp. e00175-e00211
-
-
Beare, P.A.1
-
11
-
-
79958021807
-
The Coxiella burnetii Dot/Icm system delivers a unique repertoire of type IV effectors into host cells and is required for intracellular replication
-
Carey, K.L., Newton, H.J., Lührmann, A., & Roy, C.R. The Coxiella burnetii Dot/Icm system delivers a unique repertoire of type IV effectors into host cells and is required for intracellular replication. PLoS Pathog. 7, e1002056 (2011
-
(2011)
PLoS Pathog
, vol.7
, pp. e1002056
-
-
Carey, K.L.1
Newton, H.J.2
Lührmann, A.3
Roy, C.R.4
-
12
-
-
38349149732
-
Type IV secretion system components as phylogenetic markers of entomopathogenic bacteria of the genus Rickettsiella
-
Leclerque, A., & Kleespies, R.G. Type IV secretion system components as phylogenetic markers of entomopathogenic bacteria of the genus Rickettsiella. FEMS Microbiol. Lett. 279, 167-173 (2008
-
(2008)
FEMS Microbiol. Lett
, vol.279
, pp. 167-173
-
-
Leclerque, A.1
Kleespies, R.G.2
-
13
-
-
80052595488
-
Minimization of the Legionella pneumophila genome reveals chromosomal regions involved in host range expansion
-
O'Connor, T.J., Adepoju, Y., Boyd, D., & Isberg, R.R. Minimization of the Legionella pneumophila genome reveals chromosomal regions involved in host range expansion. Proc. Natl. Acad. Sci. USA 108, 14733-14740 (2011
-
(2011)
Proc. Natl. Acad. Sci. USA
, vol.108
, pp. 14733-14740
-
-
O'Connor, T.J.1
Adepoju, Y.2
Boyd, D.3
Isberg, R.R.4
-
14
-
-
84871042527
-
Aggravating genetic interactions allow a solution to redundancy in a bacterial pathogen
-
O'Connor, T.J., Boyd, D., Dorer, M.S., & Isberg, R.R. Aggravating genetic interactions allow a solution to redundancy in a bacterial pathogen. Science 338, 1440-1444 (2012
-
(2012)
Science
, vol.338
, pp. 1440-1444
-
-
O'Connor, T.J.1
Boyd, D.2
Dorer, M.S.3
Isberg, R.R.4
-
15
-
-
68149093715
-
Search for a Tree of Life? in the thicket of the phylogenetic forest
-
Puigbò, P., Wolf, Y.I., & Koonin, E.V. Search for a Tree of Life? in the thicket of the phylogenetic forest. J. Biol. 8, 59 (2009
-
(2009)
J. Biol
, vol.8
, pp. 59
-
-
Puigbò, P.1
Wolf, Y.I.2
Koonin, E.V.3
-
16
-
-
0037108389
-
Infection due to Legionella species other than L pneumophila
-
Muder, R.R., & Yu, V.L. Infection due to Legionella species other than L. pneumophila. Clin. Infect. Dis. 35, 990-998 (2002
-
(2002)
Clin. Infect. Dis
, vol.35
, pp. 990-998
-
-
Muder, R.R.1
Yu, V.L.2
-
17
-
-
0036305718
-
Application of RNA polymerase β-subunit gene (rpoB) sequences for the molecular differentiation of Legionella species
-
Ko K.S., et al. Application of RNA polymerase β-subunit gene (rpoB) sequences for the molecular differentiation of Legionella species. J. Clin. Microbiol. 40, 2653-2658 (2002
-
(2002)
J. Clin. Microbiol
, vol.40
, pp. 2653-2658
-
-
Ko, K.S.1
-
18
-
-
11844273940
-
The Icm/Dot type-IV secretion systems of Legionella pneumophila and Coxiella burnetii
-
Segal, G., Feldman, M., & Zusman, T. The Icm/Dot type-IV secretion systems of Legionella pneumophila and Coxiella burnetii. FEMS Microbiol. Rev. 29, 65-81 (2005
-
(2005)
FEMS Microbiol. Rev
, vol.29
, pp. 65-81
-
-
Segal, G.1
Feldman, M.2
Zusman, T.3
-
19
-
-
84874280135
-
Computational modeling and experimental validation of the Legionella and Coxiella virulence-related type-IVB secretion signal
-
Lifshitz Z., et al. Computational modeling and experimental validation of the Legionella and Coxiella virulence-related type-IVB secretion signal. Proc. Natl. Acad. Sci. USA 110, E707-E715 (2013
-
(2013)
Proc. Natl. Acad. Sci. USA
, vol.110
, pp. E707-E715
-
-
Lifshitz, Z.1
-
20
-
-
84857771508
-
Comparative and functional genomics of Legionella identified eukaryotic like proteins as key players in host-pathogen interactions
-
Gomez-Valero, L., Rusniok, C., Cazalet, C., & Buchrieser, C. Comparative and functional genomics of Legionella identified eukaryotic like proteins as key players in host-pathogen interactions. Front. Microbiol. 2, 208 (2011
-
(2011)
Front. Microbiol
, vol.2
, pp. 208
-
-
Gomez-Valero, L.1
Rusniok, C.2
Cazalet, C.3
Buchrieser, C.4
-
21
-
-
70049110355
-
Genome-scale identification of Legionella pneumophila effectors using a machine learning approach
-
Burstein D., et al. Genome-scale identification of Legionella pneumophila effectors using a machine learning approach. PLoS Pathog. 5, e1000508 (2009
-
(2009)
PLoS Pathog
, vol.5
, pp. e1000508
-
-
Burstein, D.1
-
22
-
-
84906070899
-
Identification of novel Coxiella burnetii Icm/Dot effectors and genetic analysis of their involvement in modulating a mitogen-Activated protein kinase pathway
-
Lifshitz Z., et al. Identification of novel Coxiella burnetii Icm/Dot effectors and genetic analysis of their involvement in modulating a mitogen-Activated protein kinase pathway. Infect. Immun. 82, 3740-3752 (2014
-
(2014)
Infect. Immun
, vol.82
, pp. 3740-3752
-
-
Lifshitz, Z.1
-
23
-
-
0027333330
-
Hundreds of ankyrin-like repeats in functionally diverse proteins: Mobile modules that cross phyla horizontally?
-
Bork, P. Hundreds of ankyrin-like repeats in functionally diverse proteins: mobile modules that cross phyla horizontally? Proteins 17, 363-374 (1993
-
(1993)
Proteins
, vol.17
, pp. 363-374
-
-
Bork, P.1
-
24
-
-
2442706456
-
The ankyrin repeat as molecular architecture for protein recognition
-
Mosavi, L.K., Cammett, T.J., Desrosiers, D.C., & Peng, Z.Y. The ankyrin repeat as molecular architecture for protein recognition. Protein Sci. 13, 1435-1448 (2004
-
(2004)
Protein Sci
, vol.13
, pp. 1435-1448
-
-
Mosavi, L.K.1
Cammett, T.J.2
Desrosiers, D.C.3
Peng, Z.Y.4
-
25
-
-
84926415727
-
IroT/mavN a new iron-regulated gene involved in Legionella pneumophila virulence against amoebae and macrophages
-
Portier, E., et al. IroT/mavN, a new iron-regulated gene involved in Legionella pneumophila virulence against amoebae and macrophages. Environ. Microbiol. 17, 1338-1350 (2015
-
(2015)
Environ. Microbiol
, vol.17
, pp. 1338-1350
-
-
Portier, E.1
-
26
-
-
84941696044
-
MavN is a Legionella pneumophila vacuole-Associated protein required for efficient iron acquisition during intracellular growth
-
Isaac, D.T., Laguna, R.K., Valtz, N., & Isberg, R.R. MavN is a Legionella pneumophila vacuole-Associated protein required for efficient iron acquisition during intracellular growth. Proc. Natl. Acad. Sci. USA 112, E5208-E5217 (2015
-
(2015)
Proc. Natl. Acad. Sci. USA
, vol.112
, pp. E5208-E5217
-
-
Isaac, D.T.1
Laguna, R.K.2
Valtz, N.3
Isberg, R.R.4
-
27
-
-
0025331420
-
Nitrogen fixation genes involved in the Bradyrhizobium japonicum-soybean symbiosis
-
Hennecke, H. Nitrogen fixation genes involved in the Bradyrhizobium japonicum-soybean symbiosis. FEBS Lett. 268, 422-426 (1990
-
(1990)
FEBS Lett
, vol.268
, pp. 422-426
-
-
Hennecke, H.1
-
28
-
-
0036928484
-
Complete genomic sequence of nitrogen-fixing symbiotic bacterium Bradyrhizobium japonicum USDA110
-
Kaneko T., et al. Complete genomic sequence of nitrogen-fixing symbiotic bacterium Bradyrhizobium japonicum USDA110. DNA Res. 9, 189-197 (2002
-
(2002)
DNA Res
, vol.9
, pp. 189-197
-
-
Kaneko, T.1
-
29
-
-
84895835195
-
Variation, evolution, and correlation analysis of C+G content and genome or chromosome size in different kingdoms and phyla
-
Li, X.-Q., & Du, D. Variation, evolution, and correlation analysis of C+G content and genome or chromosome size in different kingdoms and phyla. PLoS One 9, e88339 (2014
-
(2014)
PLoS One
, vol.9
, pp. e88339
-
-
Li, X.-Q.1
Du, D.2
-
30
-
-
26244463780
-
Candidatus Protochlamydia amoebophila? An endosymbiont of Acanthamoeba spp
-
Collingro, A., et al. Candidatus Protochlamydia amoebophila?, an endosymbiont of Acanthamoeba spp. Int. J. Syst. Evol. Microbiol. 55, 1863-1866 (2005
-
(2005)
Int. J. Syst. Evol. Microbiol
, vol.55
, pp. 1863-1866
-
-
Collingro, A.1
-
31
-
-
79960929331
-
Legionella pneumophila SidD is a deAMPylase that modifies Rab1
-
Tan, Y., & Luo, Z.-Q. Legionella pneumophila SidD is a deAMPylase that modifies Rab1. Nature 475, 506-509 (2011
-
(2011)
Nature
, vol.475
, pp. 506-509
-
-
Tan, Y.1
Luo, Z.-Q.2
-
32
-
-
79960699136
-
De-AMPylation of the small GTPase Rab1 by the pathogen Legionella pneumophila
-
Neunuebel M.R., et al. De-AMPylation of the small GTPase Rab1 by the pathogen Legionella pneumophila. Science 333, 453-456 (2011
-
(2011)
Science
, vol.333
, pp. 453-456
-
-
Neunuebel, M.R.1
-
33
-
-
36249027095
-
Legionella pneumophila proteins that regulate Rab1 membrane cycling
-
Ingmundson, A., Delprato, A., Lambright, D.G., & Roy, C.R. Legionella pneumophila proteins that regulate Rab1 membrane cycling. Nature 450, 365-369 (2007
-
(2007)
Nature
, vol.450
, pp. 365-369
-
-
Ingmundson, A.1
Delprato, A.2
Lambright, D.G.3
Roy, C.R.4
-
34
-
-
78651234971
-
Legionella metaeffector exploits host proteasome to temporally regulate cognate effector
-
Kubori, T., Shinzawa, N., Kanuka, H., & Nagai, H. Legionella metaeffector exploits host proteasome to temporally regulate cognate effector. PLoS Pathog. 6, e1001216 (2010
-
(2010)
PLoS Pathog
, vol.6
, pp. e1001216
-
-
Kubori, T.1
Shinzawa, N.2
Kanuka, H.3
Nagai, H.4
-
35
-
-
84926506077
-
Spatiotemporal regulation of a Legionella pneumophila T4SS substrate by the metaeffector SidJ
-
Jeong, K.C., Sexton, J.A., & Vogel, J.P. Spatiotemporal regulation of a Legionella pneumophila T4SS substrate by the metaeffector SidJ. PLoS Pathog. 11, e1004695 (2015
-
(2015)
PLoS Pathog
, vol.11
, pp. e1004695
-
-
Jeong, K.C.1
Sexton, J.A.2
Vogel, J.P.3
-
36
-
-
84939526529
-
Toxicity and sidj-mediated suppression of toxicity require distinct regions in the side family of legionella pneumophila effectors
-
Havey, J.C., & Roy, C.R. Toxicity and SidJ-mediated suppression of toxicity require distinct regions in the SidE family of Legionella pneumophila effectors. Infect. Immun. 83, 3506-3514 (2015
-
(2015)
Infect. Immun
, vol.83
, pp. 3506-3514
-
-
Havey, J.C.1
Roy, C.R.2
-
37
-
-
65549084822
-
Targeting eEF1A by a Legionella pneumophila effector leads to inhibition of protein synthesis and induction of host stress response
-
Shen X., et al. Targeting eEF1A by a Legionella pneumophila effector leads to inhibition of protein synthesis and induction of host stress response. Cell. Microbiol. 11, 911-926 (2009
-
(2009)
Cell. Microbiol
, vol.11
, pp. 911-926
-
-
Shen, X.1
-
38
-
-
79952203418
-
Secreted bacterial effectors that inhibit host protein synthesis are critical for induction of the innate immune response to virulent Legionella pneumophila
-
Fontana M.F., et al. Secreted bacterial effectors that inhibit host protein synthesis are critical for induction of the innate immune response to virulent Legionella pneumophila. PLoS Pathog. 7, e1001289 (2011
-
(2011)
PLoS Pathog
, vol.7
, pp. e1001289
-
-
Fontana, M.F.1
-
39
-
-
10044263696
-
Evidence in the Legionella pneumophila genome for exploitation of host cell functions and high genome plasticity
-
Cazalet C., et al. Evidence in the Legionella pneumophila genome for exploitation of host cell functions and high genome plasticity. Nat. Genet. 36, 1165-1173 (2004
-
(2004)
Nat. Genet
, vol.36
, pp. 1165-1173
-
-
Cazalet, C.1
-
40
-
-
27744546297
-
Evidence for acquisition of Legionella type IV secretion substrates via interdomain horizontal gene transfer
-
de Felipe K.S., et al. Evidence for acquisition of Legionella type IV secretion substrates via interdomain horizontal gene transfer. J. Bacteriol. 187, 7716-7726 (2005
-
(2005)
J. Bacteriol
, vol.187
, pp. 7716-7726
-
-
De Felipe, K.S.1
-
41
-
-
64149084796
-
Rab1 guanine nucleotide exchange factor SidM is a major phosphatidylinositol 4-phosphate-binding effector protein of Legionella pneumophila
-
Brombacher E., et al. Rab1 guanine nucleotide exchange factor SidM is a major phosphatidylinositol 4-phosphate-binding effector protein of Legionella pneumophila. J. Biol. Chem. 284, 4846-4856 (2009
-
(2009)
J. Biol. Chem
, vol.284
, pp. 4846-4856
-
-
Brombacher, E.1
-
42
-
-
33646915714
-
Legionella pneumophila exploits PI(4)P to anchor secreted effector proteins to the replicative vacuole
-
Weber, S.S., Ragaz, C., Reus, K., Nyfeler, Y., & Hilbi, H. Legionella pneumophila exploits PI(4)P to anchor secreted effector proteins to the replicative vacuole. PLoS Pathog. 2, e46 (2006
-
(2006)
PLoS Pathog
, vol.2
, pp. e46
-
-
Weber, S.S.1
Ragaz, C.2
Reus, K.3
Nyfeler, Y.4
Hilbi, H.5
-
43
-
-
84905372666
-
The machinery at endoplasmic reticulum-plasma membrane contact sites contributes to spatial regulation of multiple Legionella effector proteins
-
Hubber A., et al. The machinery at endoplasmic reticulum-plasma membrane contact sites contributes to spatial regulation of multiple Legionella effector proteins. PLoS Pathog. 10, e1004222 (2014
-
(2014)
PLoS Pathog
, vol.10
, pp. e1004222
-
-
Hubber, A.1
-
45
-
-
77955397296
-
Exploitation of conserved eukaryotic host cell farnesylation machinery by an F-box effector of Legionella pneumophila
-
Price, C.T.D., Al-Quadan, T., Santic, M., Jones, S.C., & Abu Kwaik, Y. Exploitation of conserved eukaryotic host cell farnesylation machinery by an F-box effector of Legionella pneumophila. J. Exp. Med. 207, 1713-1726 (2010
-
(2010)
J. Exp. Med
, vol.207
, pp. 1713-1726
-
-
Price, C.T.D.1
Al-Quadan, T.2
Santic, M.3
Jones, S.C.4
Abu Kwaik, Y.5
-
46
-
-
83855160757
-
Host proteasomal degradation generates amino acids essential for intracellular bacterial growth
-
Price, C.T.D., Al-Quadan, T., Santic, M., Rosenshine, I., & Abu Kwaik, Y. Host proteasomal degradation generates amino acids essential for intracellular bacterial growth. Science 334, 1553-1557 (2011
-
(2011)
Science
, vol.334
, pp. 1553-1557
-
-
Price, C.T.D.1
Al-Quadan, T.2
Santic, M.3
Rosenshine, I.4
Abu Kwaik, Y.5
-
47
-
-
84861196561
-
Domain organization of Legionella effector SetA
-
Jank T., et al. Domain organization of Legionella effector SetA. Cell. Microbiol. 14, 852-868 (2012
-
(2012)
Cell. Microbiol
, vol.14
, pp. 852-868
-
-
Jank, T.1
-
48
-
-
84882408124
-
The Legionella pneumophila GTPase activating protein LepB accelerates Rab1 deactivation by a non-canonical hydrolytic mechanism
-
Mishra, A.K., Del Campo, C.M., Collins, R.E., Roy, C.R., & Lambright, D.G. The Legionella pneumophila GTPase activating protein LepB accelerates Rab1 deactivation by a non-canonical hydrolytic mechanism. J. Biol. Chem. 288, 24000-24011 (2013
-
(2013)
J. Biol. Chem
, vol.288
, pp. 24000-24011
-
-
Mishra, A.K.1
Del Campo, C.M.2
Collins, R.E.3
Roy, C.R.4
Lambright, D.G.5
-
49
-
-
84861876938
-
GTPase networks in membrane traffic
-
Mizuno-Yamasaki, E., Rivera-Molina, F., & Novick, P. GTPase networks in membrane traffic. Annu. Rev. Biochem. 81, 637-659 (2012
-
(2012)
Annu. Rev. Biochem
, vol.81
, pp. 637-659
-
-
Mizuno-Yamasaki, E.1
Rivera-Molina, F.2
Novick, P.3
-
50
-
-
84905049901
-
Trimmomatic: A flexible trimmer for Illumina sequence data
-
Bolger, A.M., Lohse, M., & Usadel, B. Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics 30, 2114-2120 (2014
-
(2014)
Bioinformatics
, vol.30
, pp. 2114-2120
-
-
Bolger, A.M.1
Lohse, M.2
Usadel, B.3
-
51
-
-
43149115851
-
Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
-
Zerbino, D.R., & Birney, E. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res. 18, 821-829 (2008
-
(2008)
Genome Res
, vol.18
, pp. 821-829
-
-
Zerbino, D.R.1
Birney, E.2
-
52
-
-
77952299957
-
Prodigal: Prokaryotic gene recognition and translation initiation site identification
-
Hyatt D., et al. Prodigal: prokaryotic gene recognition and translation initiation site identification. BMC Bioinformatics 11, 119 (2010
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 119
-
-
Hyatt, D.1
-
53
-
-
0141519279
-
OrthoMCL: Identification of ortholog groups for eukaryotic genomes
-
Li, L., Stoeckert, C.J. Jr., & Roos, D.S. OrthoMCL: identification of ortholog groups for eukaryotic genomes. Genome Res. 13, 2178-2189 (2003
-
(2003)
Genome Res
, vol.13
, pp. 2178-2189
-
-
Li, L.1
Stoeckert, C.J.2
Roos, D.S.3
-
54
-
-
55649110049
-
A simple, fast, and accurate method of phylogenomic inference
-
Wu, M., & Eisen, J.A A simple, fast, and accurate method of phylogenomic inference. Genome Biol. 9, R151 (2008
-
(2008)
Genome Biol
, vol.9
, pp. R151
-
-
Wu, M.1
Eisen, J.A.2
-
55
-
-
0026992322
-
-
AAAI Press
-
Langley, P., Iba, W., & Thompson, K. in Proc. 10th Natl. Conf. Artificial Intelligence 223-228 (AAAI Press, 1992
-
(1992)
Proc 10th Natl. Conf. Artificial Intelligence
, pp. 223-228
-
-
Langley, P.1
Iba, W.2
Thompson, K.3
-
56
-
-
34249761849
-
Learning Bayesian networks: The combination of knowledge and statistical data
-
Heckerman, D., Geiger, D., & Chickering, D.M. Learning Bayesian networks: the combination of knowledge and statistical data. Mach. Learn. 20, 197-243 (1995
-
(1995)
Mach. Learn
, vol.20
, pp. 197-243
-
-
Heckerman, D.1
Geiger, D.2
Chickering, D.M.3
-
57
-
-
27144489164
-
A tutorial on support vector machines for pattern recognition
-
Burges, C.J.C A tutorial on support vector machines for pattern recognition. Data Min. Knowl. Discov. 2, 121-167 (1998
-
(1998)
Data Min. Knowl. Discov
, vol.2
, pp. 121-167
-
-
Burges, C.J.C.1
-
58
-
-
0035478854
-
Random forests
-
Breiman, L. Random forests. Mach. Learn. 45, 5-32 (2001
-
(2001)
Mach. Learn
, vol.45
, pp. 5-32
-
-
Breiman, L.1
-
60
-
-
0036623258
-
An approximately unbiased test of phylogenetic tree selection
-
Shimodaira, H. An approximately unbiased test of phylogenetic tree selection. Syst. Biol. 51, 492-508 (2002
-
(2002)
Syst. Biol
, vol.51
, pp. 492-508
-
-
Shimodaira, H.1
-
61
-
-
0001677717
-
Controlling the false discovery rate: A practical and powerful approach to multiple testing
-
Benjamini, Y., & Hochberg, Y. Controlling the false discovery rate: a practical and powerful approach to multiple testing. J. R. Stat. Soc. B 57, 289-300 (1995
-
(1995)
J. R. Stat. Soc. B
, vol.57
, pp. 289-300
-
-
Benjamini, Y.1
Hochberg, Y.2
-
62
-
-
77249088623
-
Inference and characterization of horizontally transferred gene families using stochastic mapping
-
Cohen, O., & Pupko, T. Inference and characterization of horizontally transferred gene families using stochastic mapping. Mol. Biol. Evol. 27, 703-713 (2010
-
(2010)
Mol. Biol. Evol
, vol.27
, pp. 703-713
-
-
Cohen, O.1
Pupko, T.2
-
63
-
-
75549088819
-
MicrobesOnline: An integrated portal for comparative and functional genomics
-
Dehal P.S., et al. MicrobesOnline: an integrated portal for comparative and functional genomics. Nucleic Acids Res. 38, D396-D400 (2010
-
(2010)
Nucleic Acids Res
, vol.38
, pp. D396-D400
-
-
Dehal, P.S.1
-
64
-
-
78149254832
-
GLOOME: Gain loss mapping engine
-
Cohen, O., Ashkenazy, H., Belinky, F., Huchon, D., & Pupko, T. GLOOME: gain loss mapping engine. Bioinformatics 26, 2914-2915 (2010
-
(2010)
Bioinformatics
, vol.26
, pp. 2914-2915
-
-
Cohen, O.1
Ashkenazy, H.2
Belinky, F.3
Huchon, D.4
Pupko, T.5
-
65
-
-
84883576968
-
CoPAP: Coevolution of presence-Absence patterns
-
Cohen, O., Ashkenazy, H., Levy Karin, E., Burstein, D., & Pupko, T. CoPAP: coevolution of presence-Absence patterns. Nucleic Acids Res. 41, W232-W237 (2013
-
(2013)
Nucleic Acids Res
, vol.41
, pp. W232-W237
-
-
Cohen, O.1
Ashkenazy, H.2
Levy Karin, E.3
Burstein, D.4
Pupko, T.5
-
66
-
-
84899553363
-
RAxML version 8: A tool for phylogenetic analysis and post-Analysis of large phylogenies
-
Stamatakis, A. RAxML version 8: a tool for phylogenetic analysis and post-Analysis of large phylogenies. Bioinformatics 30, 1312-1313 (2014
-
(2014)
Bioinformatics
, vol.30
, pp. 1312-1313
-
-
Stamatakis, A.1
-
67
-
-
0036139287
-
CONSEL: For assessing the confidence of phylogenetic tree selection
-
Shimodaira, H., & Hasegawa, M. CONSEL: for assessing the confidence of phylogenetic tree selection. Bioinformatics 17, 1246-1247 (2001
-
(2001)
Bioinformatics
, vol.17
, pp. 1246-1247
-
-
Shimodaira, H.1
Hasegawa, M.2
-
68
-
-
1842406033
-
Characterization of a new region required for macrophage killing by Legionella pneumophila
-
Segal, G., & Shuman, H.A. Characterization of a new region required for macrophage killing by Legionella pneumophila. Infect. Immun. 65, 5057-5066 (1997
-
(1997)
Infect. Immun
, vol.65
, pp. 5057-5066
-
-
Segal, G.1
Shuman, H.A.2
-
69
-
-
0032932436
-
Legionella pneumophila utilizes the same genes to multiply within Acanthamoeba castellanii and human macrophages
-
Segal, G., & Shuman, H.A. Legionella pneumophila utilizes the same genes to multiply within Acanthamoeba castellanii and human macrophages. Infect. Immun. 67, 2117-2124 (1999
-
(1999)
Infect. Immun
, vol.67
, pp. 2117-2124
-
-
Segal, G.1
Shuman, H.A.2
-
70
-
-
84875619226
-
MAFFT multiple sequence alignment software version 7: Improvements in performance and usability
-
Katoh, K., & Standley, D.M. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol. Biol. Evol. 30, 772-780 (2013
-
(2013)
Mol. Biol. Evol
, vol.30
, pp. 772-780
-
-
Katoh, K.1
Standley, D.M.2
-
71
-
-
80055082271
-
Accelerated profile HMM searches
-
Eddy, S.R. Accelerated profile HMM searches. PLoS Comput. Biol. 7, e1002195 (2011
-
(2011)
PLoS Comput. Biol
, vol.7
, pp. e1002195
-
-
Eddy, S.R.1
-
72
-
-
84856489442
-
HHblits: Lightning-fast iterative protein sequence searching by HMM-HMM alignment
-
Remmert, M., Biegert, A., Hauser, A., & Söding, J. HHblits: lightning-fast iterative protein sequence searching by HMM-HMM alignment. Nat. Methods 9, 173-175 (2012
-
(2012)
Nat. Methods
, vol.9
, pp. 173-175
-
-
Remmert, M.1
Biegert, A.2
Hauser, A.3
Söding, J.4
-
73
-
-
0036087630
-
CDD: A database of conserved domain alignments with links to domain three-dimensional structure
-
Marchler-Bauer A., et al. CDD: a database of conserved domain alignments with links to domain three-dimensional structure. Nucleic Acids Res. 30, 281-283 (2002
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 281-283
-
-
Marchler-Bauer, A.1
-
74
-
-
84858077472
-
The Pfam protein families database
-
Punta M., et al. The Pfam protein families database. Nucleic Acids Res. 40, D290-D301 (2012
-
(2012)
Nucleic Acids Res
, vol.40
, pp. D290-D301
-
-
Punta, M.1
-
75
-
-
84862221167
-
SMART 7: Recent updates to the protein domain annotation resource
-
Letunic, I., Doerks, T., & Bork, P. SMART 7: recent updates to the protein domain annotation resource. Nucleic Acids Res. 40, D302-D305 (2012
-
(2012)
Nucleic Acids Res
, vol.40
, pp. D302-D305
-
-
Letunic, I.1
Doerks, T.2
Bork, P.3
-
76
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul S.F., et al. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25, 3389-3402 (1997
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
-
77
-
-
0026356891
-
Predicting coiled coils from protein sequences
-
Lupas, A., Van Dyke, M., & Stock, J. Predicting coiled coils from protein sequences. Science 252, 1162-1164 (1991
-
(1991)
Science
, vol.252
, pp. 1162-1164
-
-
Lupas, A.1
Van Dyke, M.2
Stock, J.3
-
78
-
-
43349094507
-
The igraph software package for complex network research
-
Csardi, G., & Nepusz, T. The igraph software package for complex network research. InterJournal Complex Syst. 1695, 1-9 (2006
-
(2006)
InterJournal Complex Syst
, vol.1695
, pp. 1-9
-
-
Csardi, G.1
Nepusz, T.2
-
80
-
-
79960004119
-
Interactive Tree of Life v2: Online annotation and display of phylogenetic trees made easy
-
Letunic, I., & Bork, P. Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy. Nucleic Acids Res. 39, W475-W478 (2011
-
(2011)
Nucleic Acids Res
, vol.39
, pp. W475-W478
-
-
Letunic, I.1
Bork, P.2
|