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Volumn 10, Issue 3, 2015, Pages

A unique HMG-Box domain of mouse maelstrom binds structured RNA but not double stranded DNA

Author keywords

[No Author keywords available]

Indexed keywords

ARGININE; DOUBLE STRANDED DNA; DOUBLE STRANDED RNA; DROSOPHILA PROTEIN; HIGH MOBILITY GROUP B1 PROTEIN; HIGH MOBILITY GROUP PROTEIN; LONG UNTRANSLATED RNA; MAELSTROM PROTEIN; PIWI INTERACTING RNA; SINGLE STRANDED DNA; TESTIS DETERMINING FACTOR; UNCLASSIFIED DRUG; DNA; DNA BINDING PROTEIN; MAELSTROM PROTEIN, MOUSE; PROTEIN BINDING; RETROPOSON; SMALL INTERFERING RNA; TRANSCRIPTION FACTOR;

EID: 84961289864     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0120268     Document Type: Article
Times cited : (14)

References (91)
  • 1
    • 52949095077 scopus 로고    scopus 로고
    • Retrotransposons revisited: The restraint and rehabilitation of parasites
    • PMID: 18854152
    • Goodier JL, Kazazian HH Jr. Retrotransposons revisited: The restraint and rehabilitation of parasites. Cell. 2008; 135: 23-35. doi: 10.1016/j.cell.2008.09.022 PMID: 18854152
    • (2008) Cell , vol.135 , pp. 23-35
    • Goodier, J.L.1    Kazazian, H.H.2
  • 2
    • 0028925748 scopus 로고    scopus 로고
    • Tightly regulated, developmentally specific expression of the first open reading frame from line-1 during mouse embryogenesis
    • PMID: 7878012
    • Trelogan SA, Martin SL. Tightly regulated, developmentally specific expression of the first open reading frame from line-1 during mouse embryogenesis. Proceedings of the National Academy of Sciences of the United States of America. 1995; 92: 1520-1524. PMID: 7878012
    • Proceedings of the National Academy of Sciences of the United States of America.1995 , vol.92 , pp. 1520-1524
    • Trelogan, S.A.1    Martin, S.L.2
  • 3
    • 0028274570 scopus 로고
    • Developmental and cell type specificity of line-1 expression in mouse testis: Implications for transposition
    • PMID: 8139560
    • Branciforte D, Martin SL. Developmental and cell type specificity of line-1 expression in mouse testis: Implications for transposition. Mol Cell Biol. 1994; 14: 2584-2592. PMID: 8139560
    • (1994) Mol Cell Biol , vol.14 , pp. 2584-2592
    • Branciforte, D.1    Martin, S.L.2
  • 4
    • 84862507347 scopus 로고    scopus 로고
    • Active human retrotransposons: Variation and disease
    • PMID: 22406018
    • Hancks DC, Kazazian HH Jr. Active human retrotransposons: Variation and disease. Curr Opin Genet Dev. 2012; 22: 191-203. doi: 10.1016/j.gde.2012.02.006 PMID: 22406018
    • (2012) Curr Opin Genet Dev , vol.22 , pp. 191-203
    • Hancks, D.C.1    Kazazian, H.H.2
  • 5
    • 0037047398 scopus 로고    scopus 로고
    • Line drive. Retrotransposition and genome instability
    • PMID: 12176313
    • Kazazian HH Jr, Goodier JL. Line drive. Retrotransposition and genome instability. Cell. 2002; 110: 277-280. PMID: 12176313
    • (2002) Cell , vol.110 , pp. 277-280
    • Kazazian, H.H.1    Goodier, J.L.2
  • 6
    • 84898892512 scopus 로고    scopus 로고
    • DNA methylation dynamics during epigenetic reprogramming in the germline and preimplantation embryos
    • PMID: 24736841
    • Messerschmidt DM, Knowles BB, Solter D. DNA methylation dynamics during epigenetic reprogramming in the germline and preimplantation embryos. Genes Dev. 2014; 28: 812-828. doi: 10.1101/gad.234294.113 PMID: 24736841
    • (2014) Genes Dev , vol.28 , pp. 812-828
    • Messerschmidt, D.M.1    Knowles, B.B.2    Solter, D.3
  • 7
    • 0036768615 scopus 로고    scopus 로고
    • Epigenetic reprogramming in mouse primordial germ cells
    • PMID: 12204247
    • Hajkova P, Erhardt S, Lane N, Haaf T, El-Maarri O, et al. Epigenetic reprogramming in mouse primordial germ cells. Mech Dev. 2002; 117: 15-23. PMID: 12204247
    • (2002) Mech Dev , vol.117 , pp. 15-23
    • Hajkova, P.1    Erhardt, S.2    Lane, N.3    Haaf, T.4    El-Maarri, O.5
  • 8
    • 84871702441 scopus 로고    scopus 로고
    • The dynamics of genome-wide DNA methylation reprogramming in mouse primordial germ cells
    • PMID: 23219530
    • Seisenberger S, Andrews S, Krueger F, Arand J, Walter J, et al. The dynamics of genome-wide DNA methylation reprogramming in mouse primordial germ cells. Molecular cell. 2012; 48: 849-862. doi: 10.1016/j.molcel.2012.11.001 PMID: 23219530
    • (2012) Molecular Cell , vol.48 , pp. 849-862
    • Seisenberger, S.1    Andrews, S.2    Krueger, F.3    Arand, J.4    Walter, J.5
  • 9
    • 0037710466 scopus 로고    scopus 로고
    • Methylation dynamics of repetitive DNA elements in the mouse germ cell lineage
    • PMID: 12837272
    • Lees-Murdock DJ, De Felici M, Walsh CP. Methylation dynamics of repetitive DNA elements in the mouse germ cell lineage. Genomics. 2003; 82: 230-237. PMID: 12837272
    • (2003) Genomics , vol.82 , pp. 230-237
    • Lees-Murdock, D.J.1    De Felici, M.2    Walsh, C.P.3
  • 10
    • 42149101071 scopus 로고    scopus 로고
    • DNA methylation reprogramming in the germ line
    • PMID: 18259118
    • Lees-Murdock DJ, Walsh CP. DNA methylation reprogramming in the germ line. Epigenetics. 2008; 3: 5-13. PMID: 18259118
    • (2008) Epigenetics , vol.3 , pp. 5-13
    • Lees-Murdock, D.J.1    Walsh, C.P.2
  • 11
    • 1842499716 scopus 로고    scopus 로고
    • Windows for sex-specific methylation marked by DNA methyltransferase expression profiles in mouse germ cells
    • PMID: 15063176
    • La Salle S, Mertineit C, Taketo T, Moens PB, Bestor TH, et al. Windows for sex-specific methylation marked by DNA methyltransferase expression profiles in mouse germ cells. Dev Biol. 2004; 268: 403-415. PMID: 15063176
    • (2004) Dev Biol , vol.268 , pp. 403-415
    • La Salle, S.1    Mertineit, C.2    Taketo, T.3    Moens, P.B.4    Bestor, T.H.5
  • 12
    • 33947720638 scopus 로고    scopus 로고
    • Miwi2 is essential for spermatogenesis and repression of transposons in the mouse male germline
    • PMID: 17395546
    • Carmell MA, Girard A, van de Kant HJ, Bourc'his D, Bestor TH, et al. Miwi2 is essential for spermatogenesis and repression of transposons in the mouse male germline. Dev Cell. 2007; 12: 503-514. PMID: 17395546
    • (2007) Dev Cell , vol.12 , pp. 503-514
    • Carmell, M.A.1    Girard, A.2    Van De Kant, H.J.3    Bourc'His, D.4    Bestor, T.H.5
  • 13
    • 4544223707 scopus 로고    scopus 로고
    • Meiotic catastrophe and retrotransposon reactivation in male germ cells lacking dnmt3l
    • PMID: 15318244
    • Bourc'his D, Bestor TH. Meiotic catastrophe and retrotransposon reactivation in male germ cells lacking dnmt3l. Nature. 2004; 431: 96-99. PMID: 15318244
    • (2004) Nature , vol.431 , pp. 96-99
    • Bourc'His, D.1    Bestor, T.H.2
  • 14
    • 84902008373 scopus 로고    scopus 로고
    • A role for retrotransposon line-1 in fetal oocyte attrition in mice
    • PMID: 24882376
    • Malki S, van der Heijden GW, O'Donnell KA, Martin SL, Bortvin A. A role for retrotransposon line-1 in fetal oocyte attrition in mice. Dev Cell. 2014; 29: 521-533. doi: 10.1016/j.devcel.2014.04.027 PMID: 24882376
    • (2014) Dev Cell , vol.29 , pp. 521-533
    • Malki, S.1    Van Der Heijden, G.W.2    O'Donnell, K.A.3    Martin, S.L.4    Bortvin, A.5
  • 15
    • 33751523649 scopus 로고    scopus 로고
    • Lsh is required for meiotic chromosome synapsis and retrotransposon silencing in female germ cells
    • PMID: 17115026
    • De La Fuente R, Baumann C, Fan T, Schmidtmann A, Dobrinski I, et al. Lsh is required for meiotic chromosome synapsis and retrotransposon silencing in female germ cells. Nat Cell Biol. 2006; 8: 1448-1454. PMID: 17115026
    • (2006) Nat Cell Biol , vol.8 , pp. 1448-1454
    • De La Fuente, R.1    Baumann, C.2    Fan, T.3    Schmidtmann, A.4    Dobrinski, I.5
  • 17
    • 79953089167 scopus 로고    scopus 로고
    • Piwi-interacting small rnas: The vanguard of genome defence
    • PMID: 21427766
    • Siomi MC, Sato K, Pezic D, Aravin AA. Piwi-interacting small rnas: The vanguard of genome defence. Nature reviews Molecular cell biology. 2011; 12: 246-258. doi: 10.1038/nrm3089 PMID: 21427766
    • (2011) Nature Reviews Molecular Cell Biology , vol.12 , pp. 246-258
    • Siomi, M.C.1    Sato, K.2    Pezic, D.3    Aravin, A.A.4
  • 18
    • 84881555226 scopus 로고    scopus 로고
    • Untangling the web: The diverse functions of the piwi/pirna pathway
    • PMID: 23712694
    • Mani SR, Juliano CE. Untangling the web: The diverse functions of the piwi/pirna pathway. Mol Reprod Dev. 2013; 80: 632-664. doi: 10.1002/mrd.22195 PMID: 23712694
    • (2013) Mol Reprod Dev , vol.80 , pp. 632-664
    • Mani, S.R.1    Juliano, C.E.2
  • 19
    • 84961289690 scopus 로고    scopus 로고
    • Piwi proteins and their interactors in pirna biogenesis, germline development and gene expression
    • PMID: 25512877
    • Ku HY, Lin H. Piwi proteins and their interactors in pirna biogenesis, germline development and gene expression. National science review. 2014; 1: 205-218. PMID: 25512877
    • (2014) National Science Review , vol.1 , pp. 205-218
    • Ku, H.Y.1    Lin, H.2
  • 20
    • 84861980264 scopus 로고    scopus 로고
    • Tudor domain proteins in development
    • PMID: 22669818
    • Pek JW, Anand A, Kai T. Tudor domain proteins in development. Development. 2012; 139: 2255-2266. doi: 10.1242/dev.073304 PMID: 22669818
    • (2012) Development , vol.139 , pp. 2255-2266
    • Pek, J.W.1    Anand, A.2    Kai, T.3
  • 21
    • 77950488501 scopus 로고    scopus 로고
    • How does the royal family of tudor rule the piwi-interacting rna pathway?
    • PMID: 20360382
    • Siomi MC, Mannen T, Siomi H. How does the royal family of tudor rule the piwi-interacting rna pathway? Genes Dev. 2010; 24: 636-646. doi: 10.1101/gad.1899210 PMID: 20360382
    • (2010) Genes Dev , vol.24 , pp. 636-646
    • Siomi, M.C.1    Mannen, T.2    Siomi, H.3
  • 22
    • 84912061909 scopus 로고    scopus 로고
    • Mammalian pirnas: Biogenesis, function, and mysteries
    • PMID: 25077039
    • Fu Q, Wang PJ. Mammalian pirnas: Biogenesis, function, and mysteries. Spermatogenesis. 2014; 4: e27889. PMID: 25077039
    • (2014) Spermatogenesis , vol.4
    • Fu, Q.1    Wang, P.J.2
  • 23
    • 0037352528 scopus 로고    scopus 로고
    • Maelstrom, a drosophila spindle-class gene, encodes a protein that colocalizes with vasa and rde1/ago1 homolog, aubergine, in nuage
    • PMID: 12538514
    • Findley SD, Tamanaha M, Clegg NJ, Ruohola-Baker H. Maelstrom, a drosophila spindle-class gene, encodes a protein that colocalizes with vasa and rde1/ago1 homolog, aubergine, in nuage. Development. 2003; 130: 859-871. PMID: 12538514
    • (2003) Development , vol.130 , pp. 859-871
    • Findley, S.D.1    Tamanaha, M.2    Clegg, N.J.3    Ruohola-Baker, H.4
  • 24
    • 74249101368 scopus 로고    scopus 로고
    • Cytoplasmic compartmentalization of the fetal pirna pathway in mice
    • PMID: 20011505
    • Aravin AA, van der Heijden GW, Castaneda J, Vagin VV, Hannon GJ, et al. Cytoplasmic compartmentalization of the fetal pirna pathway in mice. PLoS Genet. 2009; 5: e1000764. doi: 10.1371/journal.pgen.1000764 PMID: 20011505
    • (2009) PLoS Genet , vol.5
    • Aravin, A.A.1    Van Der Heijden, G.W.2    Castaneda, J.3    Vagin, V.V.4    Hannon, G.J.5
  • 25
    • 81255188693 scopus 로고    scopus 로고
    • Maelstrom coordinates microtubule organization during drosophila oogenesis through interaction with components of the mtoc
    • PMID: 22085963
    • Sato K, Nishida KM, Shibuya A, Siomi MC, Siomi H. Maelstrom coordinates microtubule organization during drosophila oogenesis through interaction with components of the mtoc. Genes Dev. 2011; 25: 2361-2373. doi: 10.1101/gad.174110.111 PMID: 22085963
    • (2011) Genes Dev , vol.25 , pp. 2361-2373
    • Sato, K.1    Nishida, K.M.2    Shibuya, A.3    Siomi, M.C.4    Siomi, H.5
  • 26
    • 84870060785 scopus 로고    scopus 로고
    • Transcriptional silencing of transposons by piwi and maelstrom and its impact on chromatin state and gene expression
    • PMID: 23159368
    • Sienski G, Donertas D, Brennecke J. Transcriptional silencing of transposons by piwi and maelstrom and its impact on chromatin state and gene expression. Cell. 2012; 151: 964-980. doi: 10.1016/j.cell.2012.10.040 PMID: 23159368
    • (2012) Cell , vol.151 , pp. 964-980
    • Sienski, G.1    Donertas, D.2    Brennecke, J.3
  • 27
    • 70249083439 scopus 로고    scopus 로고
    • Drosophila maelstrom ensures proper germline stem cell lineage differentiation by repressing microrna-7
    • PMID: 19758565
    • Pek JW, Lim AK, Kai T. Drosophila maelstrom ensures proper germline stem cell lineage differentiation by repressing microrna-7. Developmental cell. 2009; 17: 417-424. doi: 10.1016/j.devcel.2009.07.017 PMID: 19758565
    • (2009) Developmental Cell , vol.17 , pp. 417-424
    • Pek, J.W.1    Lim, A.K.2    Kai, T.3
  • 28
    • 48549092573 scopus 로고    scopus 로고
    • Mouse maelstrom, a component of nuage, is essential for spermatogenesis and transposon repression in meiosis
    • PMID: 18694567
    • Soper SF, van der Heijden GW, Hardiman TC, Goodheart M, Martin SL, et al. Mouse maelstrom, a component of nuage, is essential for spermatogenesis and transposon repression in meiosis. Dev Cell. 2008; 15: 285-297. doi: 10.1016/j.devcel.2008.05.015 PMID: 18694567
    • (2008) Dev Cell. , vol.15 , pp. 285-297
    • Soper, S.F.1    Van Der Heijden, G.W.2    Hardiman, T.C.3    Goodheart, M.4    Martin, S.L.5
  • 29
    • 84870014655 scopus 로고    scopus 로고
    • Polo-mediated phosphorylation of maelstrom regulates oocyte determination during oogenesis in drosophila
    • PMID: 23136393
    • Pek JW, Ng BF, Kai T. Polo-mediated phosphorylation of maelstrom regulates oocyte determination during oogenesis in drosophila. Development. 2012; 139: 4505-4513. doi: 10.1242/dev.082867 PMID: 23136393
    • (2012) Development , vol.139 , pp. 4505-4513
    • Pek, J.W.1    Ng, B.F.2    Kai, T.3
  • 30
    • 84908179136 scopus 로고    scopus 로고
    • Reduced pachytene pirnas and translation underlie spermiogenic arrest in maelstrom mutant mice
    • PMID: 25063675
    • Castaneda J, Genzor P, van der Heijden GW, Sarkeshik A, Yates JR 3rd, et al. Reduced pachytene pirnas and translation underlie spermiogenic arrest in maelstrom mutant mice. EMBO J. 2014; 33: 1999-2019. doi: 10.15252/embj.201386855 PMID: 25063675
    • (2014) EMBO J , vol.33 , pp. 1999-2019
    • Castaneda, J.1    Genzor, P.2    Van Der Heijden, G.W.3    Sarkeshik, A.4    Yates, J.R.5
  • 31
    • 78649635700 scopus 로고    scopus 로고
    • Bodies of evidence-compartmentalization of the pirna pathway in mouse fetal prospermatogonia
    • PMID: 20822889
    • van der Heijden GW, Castaneda J, Bortvin A. Bodies of evidence-compartmentalization of the pirna pathway in mouse fetal prospermatogonia. Current opinion in cell biology. 2010; 22: 752-757. doi: 10.1016/j.ceb.2010.08.014 PMID: 20822889
    • (2010) Current Opinion in Cell Biology , vol.22 , pp. 752-757
    • Van Der Heijden, G.W.1    Castaneda, J.2    Bortvin, A.3
  • 32
    • 61349105400 scopus 로고    scopus 로고
    • Functional insight into maelstrom in the germline pirna pathway: A unique domain homologous to the dnaq-h 3'-5' exonuclease, its lineage-specific expansion/loss and evolutionarily active site switch
    • PMID: 19032786
    • Zhang D, Xiong H, Shan J, Xia X, Trudeau VL. Functional insight into maelstrom in the germline pirna pathway: A unique domain homologous to the dnaq-h 3'-5' exonuclease, its lineage-specific expansion/loss and evolutionarily active site switch. Biol Direct. 2008; 3: 48. doi: 10.1186/1745-6150-3-48 PMID: 19032786
    • (2008) Biol Direct , vol.3 , pp. 48
    • Zhang, D.1    Xiong, H.2    Shan, J.3    Xia, X.4    Trudeau, V.L.5
  • 33
    • 84899011562 scopus 로고    scopus 로고
    • The rnase h-like superfamily: New members, comparative structural analysis and evolutionary classification
    • PMID: 24464998
    • Majorek KA, Dunin-Horkawicz S, Steczkiewicz K, Muszewska A, Nowotny M, et al. The rnase h-like superfamily: New members, comparative structural analysis and evolutionary classification. Nucleic Acids Res. 2014; 42: 4160-4179. doi: 10.1093/nar/gkt1414 PMID: 24464998
    • (2014) Nucleic Acids Res , vol.42 , pp. 4160-4179
    • Majorek, K.A.1    Dunin-Horkawicz, S.2    Steczkiewicz, K.3    Muszewska, A.4    Nowotny, M.5
  • 34
    • 0028233341 scopus 로고
    • Definition of a consensus DNA binding site for sry
    • PMID: 8190643
    • Harley VR, Lovell-Badge R, Goodfellow PN. Definition of a consensus DNA binding site for sry. Nucleic Acids Res. 1994; 22: 1500-1501. PMID: 8190643
    • (1994) Nucleic Acids Res , vol.22 , pp. 1500-1501
    • Harley, V.R.1    Lovell-Badge, R.2    Goodfellow, P.N.3
  • 35
    • 0033105051 scopus 로고    scopus 로고
    • The DNA-binding specificity of sox9 and other sox proteins
    • PMID: 9973626
    • Mertin S, McDowall SG, Harley VR. The DNA-binding specificity of sox9 and other sox proteins. Nucleic Acids Res. 1999; 27: 1359-1364. PMID: 9973626
    • (1999) Nucleic Acids Res , vol.27 , pp. 1359-1364
    • Mertin, S.1    McDowall, S.G.2    Harley, V.R.3
  • 36
    • 0035929239 scopus 로고    scopus 로고
    • Structural basis for sry-dependent 46-x,y sex reversal: Modulation of DNA bending by a naturally occurring point mutation
    • PMID: 11563911
    • Murphy EC, Zhurkin VB, Louis JM, Cornilescu G, Clore GM. Structural basis for sry-dependent 46-x,y sex reversal: Modulation of DNA bending by a naturally occurring point mutation. J Mol Biol. 2001; 312: 481-499. PMID: 11563911
    • (2001) J Mol Biol , vol.312 , pp. 481-499
    • Murphy, E.C.1    Zhurkin, V.B.2    Louis, J.M.3    Cornilescu, G.4    Clore, G.M.5
  • 37
    • 0032900464 scopus 로고    scopus 로고
    • Diversification pattern of the hmg and sox family members during evolution
    • PMID: 10198118
    • Soullier S, Jay P, Poulat F, Vanacker JM, Berta P, et al. Diversification pattern of the hmg and sox family members during evolution. J Mol Evol. 1999; 48: 517-527. PMID: 10198118
    • (1999) J Mol Evol , vol.48 , pp. 517-527
    • Soullier, S.1    Jay, P.2    Poulat, F.3    Vanacker, J.M.4    Berta, P.5
  • 38
    • 0027216519 scopus 로고
    • The nonspecific DNA-binding and -bending proteins hmg1 and hmg2 promote the assembly of complex nucleoprotein structures
    • PMID: 8339930
    • Paull TT, Haykinson MJ, Johnson RC. The nonspecific DNA-binding and -bending proteins hmg1 and hmg2 promote the assembly of complex nucleoprotein structures. Genes Dev. 1993; 7: 1521-1534. PMID: 8339930
    • (1993) Genes Dev , vol.7 , pp. 1521-1534
    • Paull, T.T.1    Haykinson, M.J.2    Johnson, R.C.3
  • 39
    • 0035281548 scopus 로고    scopus 로고
    • Hmg1 and 2, and related 'architectural' DNA-binding proteins
    • PMID: 11246022
    • Thomas JO, Travers AA. Hmg1 and 2, and related 'architectural' DNA-binding proteins. Trends Biochem Sci. 2001; 26: 167-174. PMID: 11246022
    • (2001) Trends Biochem Sci , vol.26 , pp. 167-174
    • Thomas, J.O.1    Travers, A.A.2
  • 40
    • 0033607614 scopus 로고    scopus 로고
    • Structure-specific binding of the two tandem hmg boxes of hmg1 to four-way junction DNA is mediated by the a domain
    • PMID: 10610765
    • Webb M, Thomas JO. Structure-specific binding of the two tandem hmg boxes of hmg1 to four-way junction DNA is mediated by the a domain. J Mol Biol. 1999; 294: 373-387. PMID: 10610765
    • (1999) J Mol Biol , vol.294 , pp. 373-387
    • Webb, M.1    Thomas, J.O.2
  • 41
    • 0033578010 scopus 로고    scopus 로고
    • Basis for recognition of cisplatin-modified DNA by high-mobility-group proteins
    • PMID: 10385126
    • Ohndorf UM, Rould MA, He Q, Pabo CO, Lippard SJ. Basis for recognition of cisplatin-modified DNA by high-mobility-group proteins. Nature. 1999; 399: 708-712. PMID: 10385126
    • (1999) Nature , vol.399 , pp. 708-712
    • Ohndorf, U.M.1    Rould, M.A.2    He, Q.3    Pabo, C.O.4    Lippard, S.J.5
  • 42
    • 70449092388 scopus 로고    scopus 로고
    • Hmgb proteins function as universal sentinels for nucleic-acid-mediated innate immune responses
    • PMID: 19890330
    • Yanai H, Ban T, Wang Z, Choi MK, Kawamura T, et al. Hmgb proteins function as universal sentinels for nucleic-acid-mediated innate immune responses. Nature. 2009; 462: 99-103. doi: 10.1038/nature08512 PMID: 19890330
    • (2009) Nature , vol.462 , pp. 99-103
    • Yanai, H.1    Ban, T.2    Wang, Z.3    Choi, M.K.4    Kawamura, T.5
  • 43
    • 79961013333 scopus 로고    scopus 로고
    • Suppression of immune responses by nonimmunogenic oligodeoxynucleotides with high affinity for high-mobility group box proteins (hmgbs)
    • PMID: 21709231
    • Yanai H, Chiba S, Ban T, Nakaima Y, Onoe T, et al. Suppression of immune responses by nonimmunogenic oligodeoxynucleotides with high affinity for high-mobility group box proteins (hmgbs). Proc Natl Acad Sci U S A. 2011; 108: 11542-11547. doi: 10.1073/pnas.1108535108 PMID: 21709231
    • (2011) Proc Natl Acad Sci U S A , vol.108 , pp. 11542-11547
    • Yanai, H.1    Chiba, S.2    Ban, T.3    Nakaima, Y.4    Onoe, T.5
  • 44
    • 54449095696 scopus 로고    scopus 로고
    • Interactions of recombinant hmgb proteins with branched rna substrates
    • PMID: 18845125
    • Bell AJ Jr, Chauhan S, Woodson SA, Kallenbach NR. Interactions of recombinant hmgb proteins with branched rna substrates. Biochem Biophys Res Commun. 2008; 377: 262-267. doi: 10.1016/j.bbrc.2008.09.131 PMID: 18845125
    • (2008) Biochem Biophys Res Commun , vol.377 , pp. 262-267
    • Bell, A.J.1    Chauhan, S.2    Woodson, S.A.3    Kallenbach, N.R.4
  • 45
    • 84961358034 scopus 로고    scopus 로고
    • Solution structure of the hmg box like domain from human hypothetical protein flj14904
    • HNMR structure of human MAEL HMG-box
    • Tomizawa T, Kigawa T, Sato M, Koshiba S, Inoue M, Kamatari YO, et al. Solution structure of the hmg box like domain from human hypothetical protein flj14904. Online: Protein Data Bank. 2005;pp. 2cto: HNMR structure of human MAEL HMG-box.
    • (2005) Online: Protein Data Bank , pp. 2cto
    • Tomizawa, T.1    Kigawa, T.2    Sato, M.3    Koshiba, S.4    Inoue, M.5    Kamatari, Y.O.6
  • 46
    • 84871719468 scopus 로고    scopus 로고
    • Round-the-horn site-directed mutagenesis
    • Moore S. Round-the-horn site-directed mutagenesis. OpenWetWare.
    • OpenWetWare
    • Moore, S.1
  • 47
    • 34548847733 scopus 로고    scopus 로고
    • Using circular dichroism spectra to estimate protein secondary structure
    • PMID: 17406547
    • Greenfield NJ. Using circular dichroism spectra to estimate protein secondary structure. Nat Protoc. 2006; 1: 2876-2890. PMID: 17406547
    • (2006) Nat Protoc , vol.1 , pp. 2876-2890
    • Greenfield, N.J.1
  • 48
    • 0029849369 scopus 로고    scopus 로고
    • Modified crush-and-soak method for recovering oligodeoxynucleotides from polyacrylamide gel
    • PMID: 8922620
    • Chen Z, Ruffner DE. Modified crush-and-soak method for recovering oligodeoxynucleotides from polyacrylamide gel. Biotechniques. 1996; 21: 820-822. PMID: 8922620
    • (1996) Biotechniques , vol.21 , pp. 820-822
    • Chen, Z.1    Ruffner, D.E.2
  • 49
    • 0042121256 scopus 로고    scopus 로고
    • Mfold web server for nucleic acid folding and hybridization prediction
    • PMID: 12824337
    • Zuker M. Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res. 2003; 31: 3406-3415. PMID: 12824337
    • (2003) Nucleic Acids Res , vol.31 , pp. 3406-3415
    • Zuker, M.1
  • 50
    • 0345281589 scopus 로고    scopus 로고
    • How rna folds
    • PMID: 10550208
    • Tinoco I Jr, Bustamante C. How rna folds. J Mol Biol. 1999; 293: 271-281. PMID: 10550208
    • (1999) J Mol Biol , vol.293 , pp. 271-281
    • Tinoco, I.1    Bustamante, C.2
  • 51
    • 84934441299 scopus 로고    scopus 로고
    • Quantitative analysis of protein-rna interactions by gel mobility shift
    • PMID: 18982286
    • Ryder SP, Recht MI, Williamson JR. Quantitative analysis of protein-rna interactions by gel mobility shift. Methods Mol Biol. 2008; 488: 99-115. doi: 10.1007/978-1-60327-475-3-7 PMID: 18982286
    • (2008) Methods Mol Biol , vol.488 , pp. 99-115
    • Ryder, S.P.1    Recht, M.I.2    Williamson, J.R.3
  • 52
    • 3242887695 scopus 로고    scopus 로고
    • Protein structure prediction and analysis using the robetta server
    • PMID: 15215442
    • Kim DE, Chivian D, Baker D. Protein structure prediction and analysis using the robetta server. Nucleic Acids Res. 2004; 32: W526-531. PMID: 15215442
    • (2004) Nucleic Acids Res , vol.32 , pp. W526-W531
    • Kim, D.E.1    Chivian, D.2    Baker, D.3
  • 53
    • 65449188232 scopus 로고    scopus 로고
    • Jalview version 2 - A multiple sequence alignment editor and analysis workbench
    • PMID: 19151095
    • Waterhouse AM, Procter JB, Martin DM, Clamp M, Barton GJ. Jalview version 2 - a multiple sequence alignment editor and analysis workbench. Bioinformatics. 2009; 25: 1189-1191. doi: 10.1093/bioinformatics/btp033 PMID: 19151095
    • (2009) Bioinformatics , vol.25 , pp. 1189-1191
    • Waterhouse, A.M.1    Procter, J.B.2    Martin, D.M.3    Clamp, M.4    Barton, G.J.5
  • 54
    • 84890330527 scopus 로고    scopus 로고
    • Mega6: Molecular evolutionary genetics analysis version 6.0
    • PMID: 24132122
    • Tamura K, Stecher G, Peterson D, Filipski A, Kumar S. Mega6: Molecular evolutionary genetics analysis version 6.0. Mol Biol Evol. 2013; 30: 2725-2729. doi: 10.1093/molbev/mst197 PMID: 24132122
    • (2013) Mol Biol Evol , vol.30 , pp. 2725-2729
    • Tamura, K.1    Stecher, G.2    Peterson, D.3    Filipski, A.4    Kumar, S.5
  • 55
    • 0026691182 scopus 로고
    • The rapid generation of mutation data matrices from protein sequences
    • PMID: 1633570
    • Jones DT, Taylor WR, Thornton JM. The rapid generation of mutation data matrices from protein sequences. Comput Appl Biosci. 1992; 8: 275-282. PMID: 1633570
    • (1992) Comput Appl Biosci , vol.8 , pp. 275-282
    • Jones, D.T.1    Taylor, W.R.2    Thornton, J.M.3
  • 56
    • 53849146020 scopus 로고    scopus 로고
    • Model-based analysis of chip-seq (macs)
    • PMID: 18798982
    • Zhang Y, Liu T, Meyer CA, Eeckhoute J, Johnson DS, et al. Model-based analysis of chip-seq (macs). Genome Biol. 2008; 9: R137. doi: 10.1186/gb-2008-9-9-r137 PMID: 18798982
    • (2008) Genome Biol , vol.9 , pp. R137
    • Zhang, Y.1    Liu, T.2    Meyer, C.A.3    Eeckhoute, J.4    Johnson, D.S.5
  • 57
    • 77951770756 scopus 로고    scopus 로고
    • Bedtools: A flexible suite of utilities for comparing genomic features
    • PMID: 20110278
    • Quinlan AR, Hall IM. Bedtools: A flexible suite of utilities for comparing genomic features. Bioinformatics. 2010; 26: 841-842. doi: 10.1093/bioinformatics/btq033 PMID: 20110278
    • (2010) Bioinformatics , vol.26 , pp. 841-842
    • Quinlan, A.R.1    Hall, I.M.2
  • 58
    • 77952567987 scopus 로고    scopus 로고
    • Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and b cell identities
    • PMID: 20513432
    • Heinz S, Benner C, Spann N, Bertolino E, Lin YC, et al. Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and b cell identities. Mol Cell. 2010; 38: 576-589. doi: 10.1016/j.molcel.2010.05.004 PMID: 20513432
    • (2010) Mol Cell , vol.38 , pp. 576-589
    • Heinz, S.1    Benner, C.2    Spann, N.3    Bertolino, E.4    Lin, Y.C.5
  • 59
    • 3042798454 scopus 로고    scopus 로고
    • Yeast telomerase rna: A flexible scaffold for protein subunits
    • PMID: 15226497
    • Zappulla DC, Cech TR. Yeast telomerase rna: A flexible scaffold for protein subunits. Proc Natl Acad Sci U S A. 2004; 101: 10024-10029. PMID: 15226497
    • (2004) Proc Natl Acad Sci U S A , vol.101 , pp. 10024-10029
    • Zappulla, D.C.1    Cech, T.R.2
  • 60
    • 77953311493 scopus 로고    scopus 로고
    • Electrostatic interactions between arginines and the minor groove in the nucleosome
    • PMID: 20232938
    • West SM, Rohs R, Mann RS, Honig B. Electrostatic interactions between arginines and the minor groove in the nucleosome. J Biomol Struct Dyn. 2010; 27: 861-866. PMID: 20232938
    • (2010) J Biomol Struct Dyn , vol.27 , pp. 861-866
    • West, S.M.1    Rohs, R.2    Mann, R.S.3    Honig, B.4
  • 61
    • 77950519937 scopus 로고    scopus 로고
    • Origins of specificity in protein-DNA recognition
    • PMID: 20334529
    • Rohs R, Jin X, West SM, Joshi R, Honig B, et al. Origins of specificity in protein-DNA recognition. Annual review of biochemistry. 2010; 79: 233-269. doi: 10.1146/annurev-biochem-060408-091030 PMID: 20334529
    • (2010) Annual Review of Biochemistry , vol.79 , pp. 233-269
    • Rohs, R.1    Jin, X.2    West, S.M.3    Joshi, R.4    Honig, B.5
  • 62
    • 0026350074 scopus 로고
    • Arginine-mediated rna recognition: The arginine fork
    • PMID: 1709522
    • Calnan BJ, Tidor B, Biancalana S, Hudson D, Frankel AD. Arginine-mediated rna recognition: The arginine fork. Science. 1991; 252: 1167-1171. PMID: 1709522
    • (1991) Science , vol.252 , pp. 1167-1171
    • Calnan, B.J.1    Tidor, B.2    Biancalana, S.3    Hudson, D.4    Frankel, A.D.5
  • 63
    • 0041092343 scopus 로고    scopus 로고
    • Hmg box proteins bind to four-way DNA junctions in their open conformation
    • PMID: 9451006
    • Po JR, Norman DG, Bramham J, Bianchi ME, Lilley DM. Hmg box proteins bind to four-way DNA junctions in their open conformation. EMBO J. 1998; 17: 817-826. PMID: 9451006
    • (1998) EMBO J , vol.17 , pp. 817-826
    • Po, J.R.1    Norman, D.G.2    Bramham, J.3    Bianchi, M.E.4    Lilley, D.M.5
  • 64
    • 0031919820 scopus 로고    scopus 로고
    • Binding to four-way junction DNA: A common property of architectural proteins?
    • PMID: 9535214
    • Zlatanova J, van Holde K. Binding to four-way junction DNA: A common property of architectural proteins? FASEB J. 1998; 12: 421-431. PMID: 9535214
    • (1998) FASEB J , vol.12 , pp. 421-431
    • Zlatanova, J.1    Van Holde, K.2
  • 66
    • 0030780401 scopus 로고    scopus 로고
    • The sry cantilever motif discriminates between sequence- and struc-ture- specific DNA recognition: Alanine mutagenesis of an hmg box
    • PMID: 9399148
    • Weiss MA, Ukiyama E, King CY. The sry cantilever motif discriminates between sequence- and struc-ture- specific DNA recognition: Alanine mutagenesis of an hmg box. J Biomol Struct Dyn. 1997; 15: 177-184. PMID: 9399148
    • (1997) J Biomol Struct Dyn , vol.15 , pp. 177-184
    • Weiss, M.A.1    Ukiyama, E.2    King, C.Y.3
  • 67
    • 0028358431 scopus 로고
    • The rna polymerase i transcription factor ubf is a sequence-tolerant hmg-box protein that can recognize structured nucleic acids
    • PMID: 8041627
    • Copenhaver GP, Putnam CD, Denton ML, Pikaard CS. The rna polymerase i transcription factor ubf is a sequence-tolerant hmg-box protein that can recognize structured nucleic acids. Nucleic Acids Res. 1994; 22: 2651-2657. PMID: 8041627
    • (1994) Nucleic Acids Res , vol.22 , pp. 2651-2657
    • Copenhaver, G.P.1    Putnam, C.D.2    Denton, M.L.3    Pikaard, C.S.4
  • 69
    • 0034630725 scopus 로고    scopus 로고
    • Binding of human mitochondrial transcription factor a, an hmg box protein, to a four-way DNA junction
    • PMID: 10799324
    • Ohno T, Umeda S, Hamasaki N, Kang D. Binding of human mitochondrial transcription factor a, an hmg box protein, to a four-way DNA junction. Biochem Biophys Res Commun. 2000; 271: 492-498. PMID: 10799324
    • (2000) Biochem Biophys Res Commun , vol.271 , pp. 492-498
    • Ohno, T.1    Umeda, S.2    Hamasaki, N.3    Kang, D.4
  • 70
    • 0024584528 scopus 로고
    • Specific recognition of cruciform DNA by nuclear protein hmg1
    • PMID: 2922595
    • Bianchi ME, Beltrame M, Paonessa G. Specific recognition of cruciform DNA by nuclear protein hmg1. Science. 1989; 243: 1056-1059. PMID: 2922595
    • (1989) Science , vol.243 , pp. 1056-1059
    • Bianchi, M.E.1    Beltrame, M.2    Paonessa, G.3
  • 71
    • 2542459486 scopus 로고    scopus 로고
    • High affinity binding of proteins hmg1 and hmg2 to semicatenated DNA loops
    • PMID: 11041984
    • Gaillard C, Strauss F. High affinity binding of proteins hmg1 and hmg2 to semicatenated DNA loops. BMC Mol Biol. 2000; 1: 1. PMID: 11041984
    • (2000) BMC Mol Biol , vol.1 , pp. 1
    • Gaillard, C.1    Strauss, F.2
  • 73
    • 0036076678 scopus 로고    scopus 로고
    • The inherent properties of DNA four-way junctions: Comparing the crystal structures of holliday junctions
    • PMID: 12126623
    • Eichman BF, Ortiz-Lombardia M, Aymami J, Coll M, Ho PS. The inherent properties of DNA four-way junctions: Comparing the crystal structures of holliday junctions. J Mol Biol. 2002; 320: 1037-1051. PMID: 12126623
    • (2002) J Mol Biol , vol.320 , pp. 1037-1051
    • Eichman, B.F.1    Ortiz-Lombardia, M.2    Aymami, J.3    Coll, M.4    Ho, P.S.5
  • 74
    • 0030005058 scopus 로고    scopus 로고
    • The structure of 4-way DNA junctions: Specific binding of bis-intercalators with rigid linkers
    • PMID: 8649974
    • Carpenter ML, Lowe G, Cook PR. The structure of 4-way DNA junctions: Specific binding of bis-intercalators with rigid linkers. Nucleic Acids Res. 1996; 24: 1594-1601. PMID: 8649974
    • (1996) Nucleic Acids Res , vol.24 , pp. 1594-1601
    • Carpenter, M.L.1    Lowe, G.2    Cook, P.R.3
  • 75
    • 84867884299 scopus 로고    scopus 로고
    • Hidden complexity in the isomerization dynamics of holliday junctions
    • PMID: 23089865
    • Hyeon C, Lee J, Yoon J, Hohng S, Thirumalai D. Hidden complexity in the isomerization dynamics of holliday junctions. Nature chemistry. 2012; 4: 907-914. doi: 10.1038/nchem.1463 PMID: 23089865
    • (2012) Nature Chemistry , vol.4 , pp. 907-914
    • Hyeon, C.1    Lee, J.2    Yoon, J.3    Hohng, S.4    Thirumalai, D.5
  • 76
    • 13544266569 scopus 로고    scopus 로고
    • Conformational model of the holliday junction transition deduced from molecular dynamics simulations
    • PMID: 15613597
    • Yu J, Ha T, Schulten K. Conformational model of the holliday junction transition deduced from molecular dynamics simulations. Nucleic Acids Res. 2004; 32: 6683-6695. PMID: 15613597
    • (2004) Nucleic Acids Res , vol.32 , pp. 6683-6695
    • Yu, J.1    Ha, T.2    Schulten, K.3
  • 77
    • 84856710295 scopus 로고    scopus 로고
    • Molecular dynamics of a DNA holliday junction: The inverted repeat sequence d(ccggtaccgg)(4)
    • PMID: 22325278
    • Wheatley EG, Pieniazek SN, Mukerji I, Beveridge DL. Molecular dynamics of a DNA holliday junction: The inverted repeat sequence d(ccggtaccgg)(4). Biophysical journal. 2012; 102: 552-560. doi: 10.1016/j.bpj.2011.11.4023 PMID: 22325278
    • (2012) Biophysical Journal , vol.102 , pp. 552-560
    • Wheatley, E.G.1    Pieniazek, S.N.2    Mukerji, I.3    Beveridge, D.L.4
  • 79
    • 0034727674 scopus 로고    scopus 로고
    • Intercalating residues determine the mode of hmg1 domains a and b binding to cisplatin-modified DNA
    • PMID: 11087395
    • He Q, Ohndorf UM, Lippard SJ. Intercalating residues determine the mode of hmg1 domains a and b binding to cisplatin-modified DNA. Biochemistry. 2000; 39: 14426-14435. PMID: 11087395
    • (2000) Biochemistry , vol.39 , pp. 14426-14435
    • He, Q.1    Ohndorf, U.M.2    Lippard, S.J.3
  • 80
    • 0346500500 scopus 로고    scopus 로고
    • Conformational flexibility of four-way junctions in rna
    • PMID: 14741204
    • Hohng S, Wilson TJ, Tan E, Clegg RM, Lilley DM, et al. Conformational flexibility of four-way junctions in rna. J Mol Biol. 2004; 336: 69-79. PMID: 14741204
    • (2004) J Mol Biol , vol.336 , pp. 69-79
    • Hohng, S.1    Wilson, T.J.2    Tan, E.3    Clegg, R.M.4    Lilley, D.M.5
  • 81
    • 0024434420 scopus 로고
    • Sequence-specific recognition of rna hairpins by bacteriophage antiterminators requires a conserved arginine-rich motif
    • PMID: 2477156
    • Lazinski D, Grzadzielska E, Das A. Sequence-specific recognition of rna hairpins by bacteriophage antiterminators requires a conserved arginine-rich motif. Cell. 1989; 59: 207-218. PMID: 2477156
    • (1989) Cell , vol.59 , pp. 207-218
    • Lazinski, D.1    Grzadzielska, E.2    Das, A.3
  • 82
    • 0033773327 scopus 로고    scopus 로고
    • Arginine-rich regions mediate the rna binding and regulatory activities of the protein encoded by the drosophila melanogaster suppressor of sable gene
    • PMID: 11027289
    • Turnage MA, Brewer-Jensen P, Bai WL, Searles LL. Arginine-rich regions mediate the rna binding and regulatory activities of the protein encoded by the drosophila melanogaster suppressor of sable gene. Mol Cell Biol. 2000; 20: 8198-8208. PMID: 11027289
    • (2000) Mol Cell Biol , vol.20 , pp. 8198-8208
    • Turnage, M.A.1    Brewer-Jensen, P.2    Bai, W.L.3    Searles, L.L.4
  • 83
    • 0006379919 scopus 로고
    • Identification of transcriptional regulatory activity within the 5′ a-type monomer sequence of the mouse line-1 retroposon
    • PMID: 1311970
    • Severynse DM, Hutchison CA 3rd, Edgell MH. Identification of transcriptional regulatory activity within the 5′ a-type monomer sequence of the mouse line-1 retroposon. Mamm Genome. 1992; 2: 41-50. PMID: 1311970
    • (1992) Mamm Genome , vol.2 , pp. 41-50
    • Severynse, D.M.1    Hutchison, C.A.2    Edgell, M.H.3
  • 84
    • 0027190768 scopus 로고
    • L1 a-monomer tandem arrays have expanded during the course of mouse l1 evolution
    • PMID: 8336543
    • Schichman SA, Adey NB, Edgell MH, Hutchison CA 3rd. L1 a-monomer tandem arrays have expanded during the course of mouse l1 evolution. Mol Biol Evol. 1993; 10: 552-570. PMID: 8336543
    • (1993) Mol Biol Evol , vol.10 , pp. 552-570
    • Schichman, S.A.1    Adey, N.B.2    Edgell, M.H.3    Hutchison, C.A.4
  • 85
    • 80051807498 scopus 로고    scopus 로고
    • Pirnas, transposon silencing, and germline genome integrity
    • PMID: 21600904
    • Castaneda J, Genzor P, Bortvin A. Pirnas, transposon silencing, and germline genome integrity. Mutation research. 2011; 714: 95-104. doi: 10.1016/j.mrfmmm.2011.05.002 PMID: 21600904
    • (2011) Mutation Research , vol.714 , pp. 95-104
    • Castaneda, J.1    Genzor, P.2    Bortvin, A.3
  • 86
    • 84885842840 scopus 로고    scopus 로고
    • Hidden specificity in an apparently nonspecific rna-binding protein
    • PMID: 24056935
    • Guenther UP, Yandek LE, Niland CN, Campbell FE, Anderson D, et al. Hidden specificity in an apparently nonspecific rna-binding protein. Nature. 2013; 502: 385-388. doi: 10.1038/nature12543 PMID: 24056935
    • (2013) Nature , vol.502 , pp. 385-388
    • Guenther, U.P.1    Yandek, L.E.2    Niland, C.N.3    Campbell, F.E.4    Anderson, D.5
  • 87
    • 67449103067 scopus 로고    scopus 로고
    • Analysis of four-way junctions in rna structures
    • PMID: 19445952
    • Laing C, Schlick T. Analysis of four-way junctions in rna structures. J Mol Biol. 2009; 390: 547-559. doi: 10.1016/j.jmb.2009.04.084 PMID: 19445952
    • (2009) J Mol Biol , vol.390 , pp. 547-559
    • Laing, C.1    Schlick, T.2
  • 88
    • 84862969708 scopus 로고    scopus 로고
    • Predicting coaxial helical stacking in rna junctions
    • PMID: 21917853
    • Laing C, Wen D, Wang JT, Schlick T. Predicting coaxial helical stacking in rna junctions. Nucleic Acids Res. 2012; 40: 487-498. doi: 10.1093/nar/gkr629 PMID: 21917853
    • (2012) Nucleic Acids Res , vol.40 , pp. 487-498
    • Laing, C.1    Wen, D.2    Wang, J.T.3    Schlick, T.4
  • 89
    • 84901913783 scopus 로고    scopus 로고
    • Rna bind-n-seq: Quantitative assessment of the sequence and structural binding specificity of rna binding proteins
    • PMID: 24837674
    • Lambert N, Robertson A, Jangi M, McGeary S, Sharp PA, et al. Rna bind-n-seq: Quantitative assessment of the sequence and structural binding specificity of rna binding proteins. Mol Cell. 2014; 54: 887-900. doi: 10.1016/j.molcel.2014.04.016 PMID: 24837674
    • (2014) Mol Cell , vol.54 , pp. 887-900
    • Lambert, N.1    Robertson, A.2    Jangi, M.3    McGeary, S.4    Sharp, P.A.5
  • 91
    • 36749037521 scopus 로고    scopus 로고
    • The piwi-pirna pathway provides an adaptive defense in the transposon arms race
    • PMID: 17975059
    • Aravin AA, Hannon GJ, Brennecke J. The piwi-pirna pathway provides an adaptive defense in the transposon arms race. Science. 2007; 318: 761-764. PMID: 17975059
    • (2007) Science , vol.318 , pp. 761-764
    • Aravin, A.A.1    Hannon, G.J.2    Brennecke, J.3


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