Biomolecule-nanoparticle interactions: Elucidation of the thermodynamics by isothermal titration calorimetry

Biochimica et Biophysica Acta - General Subjects

Volumn 1860, Issue 5, 2016, Pages 945-956

  Huang, Rixiang ^a   Lau, Boris L T ^b  

^a GEORGIA INSTITUTE OF TECHNOLOGY   (United States)

^b University of Massachusetts   (United States)

Author keywords

Binding affinity; Heat exchange; Isothermal titration calorimetry; Nanoparticles; Protein corona

Indexed keywords

AMINO ACID; BETA LACTOGLOBULIN; BIOTIN; BOVINE SERUM ALBUMIN; CALCIFYING NANOPARTICLE; CARBON NANOPARTICLE; CHITOSAN; CHYMOTRYPSIN; CONCANAVALIN A; COPOLYMER; COPPER OXIDE NANOPARTICLE; CYTOCHROME C; DNA; FIBRINOGEN; GOLD NANOPARTICLE; GREEN FLUORESCENT PROTEIN; HETASTARCH; HISTONE; JACALIN; LECTIN; MAGNETITE NANOPARTICLE; NANOPARTICLE; PEANUT AGGLUTININ; PEPTIDE; POLYSACCHARIDE; POLYSTYRENE; PROTEIN; UBIQUITIN; ZINC OXIDE NANOPARTICLE; ADHESIN; ADHESIN, PSEUDOMONAS; CALMODULIN; GALACTOSE; PROTEIN BINDING;

ARTICLE; BINDING AFFINITY; CHEMICAL COMPOSITION; HEAT EXCHANGE; HYDRATION; HYDROPHOBICITY; ISOTHERMAL TITRATION CALORIMETRY; MOLECULAR INTERACTION; NONHUMAN; PARTICLE SIZE; PH; PHYSICAL CHEMISTRY; PRIORITY JOURNAL; PROTEIN BINDING; STOICHIOMETRY; SURFACE CHARGE; THERMODYNAMICS; ANIMAL; BOVINE; CALORIMETRY; CHEMISTRY; HEAT; HUMAN; KINETICS; PROCEDURES; TITRIMETRY;

ADHESINS, BACTERIAL; ANIMALS; CALMODULIN; CALORIMETRY; CATTLE; CONCANAVALIN A; CYTOCHROMES C; GALACTOSE; HOT TEMPERATURE; HUMANS; KINETICS; LECTINS; NANOPARTICLES; PROTEIN BINDING; SERUM ALBUMIN, BOVINE; THERMODYNAMICS; TITRIMETRY;

EID: 84960803491     PISSN: 03044165     EISSN: 18728006     Source Type: Journal    
DOI: 10.1016/j.bbagen.2016.01.027     Document Type: Article

References (93)

1. J.E. Gagner, and et al. Engineering nanomaterials for biomedical applications requires understanding the nano-bio interface: a perspective J. Phys. Chem. Lett. 3 21 2012 3149 3158
2. M.P. Monopoli, and et al. Biomolecular coronas provide the biological identity of nanosized materials Nat. Nanotechnol. 7 12 2012 779 786
3. A.E. Nel, and et al. Understanding biophysicochemical interactions at the nano-bio interface Nat. Mater. 8 7 2009 543 557
4. A.A. Shemetov, I. Nabiev, and A. Sukhanova Molecular Interaction of proteins and peptides with nanoparticles ACS Nano 2012
5. A. Weir, and et al. Titanium dioxide nanoparticles in food and personal care products Environ. Sci. Technol. 46 4 2012 2242 2250
6. F. Gottschalk, and B. Nowack The release of engineered nanomaterials to the environment J. Environ. Monit. 13 5 2011 1145 1155
7. M.F. Hochella, and et al. Nanominerals, mineral nanoparticles, and Earth systems Geochim. Cosmochim. Acta 72 12 2008 A382
8. P. Nannipieri, and et al. Role of phosphatase enzymes in soil Phosphorus in Action: Biological Processes in Soil Phosphorus Cycling 26 2011 215 243
9. G.R. Aiken, H. Hsu-Kim, and J.N. Ryan Influence of dissolved organic matter on the environmental fate of metals, nanoparticles, and colloids Environ. Sci. Technol. 45 8 2011 3196 3201
10. A. Velázquez-Campoy, and et al. Isothermal titration calorimetry Current Protocols in Cell Biology 2004 John Wiley & Sons, Inc
11. E. Lewis, and K. Murphy Isothermal titration calorimetry G. Ulrich Nienhaus, Protein-Ligand Interactions 2005 Humana Press 1 15
12. M.W. Freyer, and E.A. Lewis Isothermal titration calorimetry: experimental design, data analysis, and probing macromolecule/ligand binding and kinetic interactions J.C.Dr. John, Dr.H. William Detrich III Methods in Cell Biology 2008 Academic Press 79 113
13. E. Freire, O.L. Mayorga, and M. Straume Isothermal titration calorimetry Anal. Chem. 62 18 1990 950A 959A
14. M. Reynolds, and et al. Multivalent gold glycoclusters: high affinity molecular recognition by bacterial lectin PA-IL Chem. Eur. J. 18 14 2012 4264 4273
15. J. Shang, and X.H. Gao Nanoparticle counting: towards accurate determination of the molar concentration Chem. Soc. Rev. 43 21 2014 7267 7278
16. J.C. Love, and et al. Self-assembled monolayers of thiolates on metals as a form of nanotechnology Chem. Rev. 105 4 2005 1103 1170
17. J.F. Zhou, and et al. Functionalized gold nanoparticles: synthesis, structure and colloid stability J. Colloid Interface Sci. 331 2 2009 251 262
18. J. Tellinghuisen, and J.D. Chodera Systematic errors in isothermal titration calorimetry: concentrations and baselines Anal. Biochem. 414 2 2011 297 299
19. J. Tellinghuisen Designing isothermal titration calorimetry experiments for the study of 1:1 binding: problems with the "standard protocol" Anal. Biochem. 424 2 2012 211 220
20. I. Herrera, and M.A. Winnik Differential binding models for isothermal titration calorimetry: moving beyond the wiseman isotherm J. Phys. Chem. B 117 29 2013 8659 8672
21. 2. 2. Patch-controlled electrostatic attraction Environ. Sci. Technol. 44 23 2010 8877 8883
22. 2. 1. Forces driving adsorption Environ. Sci. Technol. 44 23 2010 8870 8876
23. T. Chatterjee, and et al. The effect of zinc oxide nanoparticles on the structure of the periplasmic domain of the Vibrio cholerae ToxR protein FEBS J. 277 20 2010 4184 4194
24. S. Liu, and et al. Investigations on the interactions between plasma proteins and magnetic iron oxide nanoparticles with different surface modifications J. Phys. Chem. C 114 49 2010 21270 21276
25. S. Chakraborti, and et al. Interaction of polyethyleneimine-functionalized ZnO nanoparticles with bovine serum albumin Langmuir 28 30 2012 11142 11152
26. G. Rabbani, and et al. Effect of copper oxide nanoparticles on the conformation and activity of beta-galactosidase Colloids Surf. B: Biointerfaces 123 2014 96 105
27. S. Lindman, and et al. Systematic investigation of the thermodynamics of HSA adsorption to N-iso-propylacrylamide/N-tert-butylacrylamide copolymer nanoparticles. Effects of particle size and hydrophobicity Nano Lett. 7 4 2007 914 920
28. G. Baier, and et al. BSA adsorption on differently charged polystyrene nanoparticles using isothermal titration calorimetry and the influence on cellular uptake Macromol. Biosci. 11 5 2011 628 638
29. B.P. Koppolu, and et al. Controlling chitosan-based encapsulation for protein and vaccine delivery Biomaterials 35 14 2014 4382 4389
30. S. Winzen, and et al. Complementary analysis of the hard and soft protein corona: sample preparation critically effects corona composition Nanoscale 7 7 2015 2992 3001
31. M. De, and et al. Biomimetic interactions of proteins with functionalized nanoparticles: a thermodynamic study J. Am. Chem. Soc. 129 35 2007 10747 10753
32. R. Huang, and et al. Effects of surface compositional and structural heterogeneity on nanoparticle-protein interactions: different protein configurations ACS Nano 8 6 2014 5402 5412
33. R. Perozzo, G. Folkers, and L. Scapozza Thermodynamics of protein-ligand interactions: history, presence, and future aspects J. Recept. Signal Transduction 24 1-2 2004 1 52
34. M.C. Chervenak, and E.J. Toone A direct measure of the contribution of solvent reorganization to the enthalpy of binding J. Am. Chem. Soc. 116 23 1994 10533 10539
35. C. Grote, and et al. Unspecific ligand binding yielding stable colloidal ITO-nanoparticle dispersions Chem. Commun. 48 10 2012 1464 1466
36. C.C. Fleischer, and C.K. Payne Secondary structure of corona proteins determines the cell surface receptors used by nanoparticles J. Phys. Chem. B 118 49 2014 14017 14026
37. K. Chen, and et al. Electrostatic selectivity in protein-nanoparticle interactions Biomacromolecules 12 7 2011 2552 2561
38. M. De, and et al. Size and geometry dependent protein-nanoparticle self-assembly Chem. Commun. 16 2009 2157 2159
39. R. Huang, and et al. Protein-nanoparticle interactions: the effects of surface compositional and structural heterogeneity are scale dependent Nanoscale 5 15 2013 6928 6935
40. T. Cedervall, and et al. Understanding the nanoparticle-protein corona using methods to quantify exchange rates and affinities of proteins for nanoparticles Proc. Natl. Acad. Sci. 104 7 2007 2050 2055
41. A.E. Contreras, and et al. Studying the role of common membrane surface functionalities on adsorption and cleaning of organic foulants using QCM-D Environ. Sci. Technol. 45 15 2011 6309 6315
42. P. Roach, D. Farrar, and C.C. Perry Interpretation of protein adsorption: surface-induced conformational changes J. Am. Chem. Soc. 127 22 2005 8168 8173
43. S. Goy-López, and et al. Physicochemical characteristics of protein-NP bioconjugates: the role of particle curvature and solution conditions on human serum albumin conformation and fibrillogenesis inhibition Langmuir 28 24 2012 9113 9126
44. M.V. Rekharsky, and Y. Inoue Complexation thermodynamics of cyclodextrins Chem. Rev. 98 5 1998 1875 1918
45. C.C. You, S.S. Agasti, and V.M. Rotello Isomeric control of protein recognition with amino acid- and dipeptide-functionalized gold nanoparticles Chem. Eur. J. 14 1 2008 143 150
46. X. Wang, and et al. Direct measurement of glyconanoparticles and lectin interactions by isothermal titration calorimetry Anal. Chem. 84 10 2012 4248 4252
47. K. Srinivasan, and et al. Investigation into the molecular and thermodynamic basis of protein interactions in multimodal chromatography using functionalized nanoparticles Langmuir 30 44 2014 13205 13216
48. V.S. Marangoni, I.M. Paino, and V. Zucolotto Synthesis and characterization of jacalin-gold nanoparticles conjugates as specific markers for cancer cells Colloids Surf. B: Biointerfaces 112 2013 380 386
49. J. Rieger, and et al. Polyester nanoparticles presenting mannose residues: toward the development of new vaccine delivery systems combining biodegradability and targeting properties Biomacromolecules 10 3 2009 651 657
50. X. Li, and et al. Interaction of bovine serum albumin with self-assembled nanoparticles of 6-O-cholesterol modified chitosan Colloids Surf. B: Biointerfaces 92 0 2012 136 141
51. S. Mandal, and et al. Interaction of carbon nanoparticles to serum albumin: elucidation of the extent of perturbation of serum albumin conformations and thermodynamical parameters J. Hazard. Mater. 248 2013 238 245
52. A. Astegno, and et al. Structural plasticity of calmodulin on the surface of CaF2 nanoparticles preserves its biological function Nanoscale 6 24 2014 15037 15047
53. A. Gourishankar, and et al. Isothermal titration calorimetry studies on the binding of DNA bases and PNA base monomers to gold nanoparticles J. Am. Chem. Soc. 126 41 2004 13186 13187
54. N. Varghese, and et al. Binding of DNA nucleobases and nucleosides with graphene ChemPhysChem 10 1 2009 206 210
55. B. Lang Hybridization thermodynamics of DNA bound to gold nanoparticles J. Chem. Thermodyn. 42 12 2010 1435 1440
56. A.B. Davila-Ibanez, N.J. Buurma, and V. Salgueirino Assessment of DNA complexation onto polyelectrolyte-coated magnetic silica nanoparticles Nanoscale 5 11 2013 4797 4807
57. A. Sizovs, and et al. Precisely tunable engineering of sub-30 nm monodisperse oligonucleotide nanoparticles J. Am. Chem. Soc. 136 1 2014 234 240
58. H. Joshi, and et al. Isothermal titration calorimetry studies on the binding of amino acids to gold nanoparticles J. Phys. Chem. B 108 31 2004 11535 11540
59. S.C. Wagner, and et al. Nanoparticle-induced folding and fibril formation of coiled-coil-based model peptides Small 6 12 2010 1321 1328
60. N.H. Cho, and et al. A multifunctional core-shell nanoparticle for dendritic cell-based cancer immunotherapy Nat. Nanotechnol. 6 10 2011 675 682
61. A.A. Sousa, and et al. Synthesis, characterization, and direct intracellular imaging of ultrasmall and uniform glutathione-coated gold nanoparticles Small 8 14 2012 2277 2286
62. B. Wang, and et al. Nanoparticle-induced surface reconstruction of phospholipid membranes Proc. Natl. Acad. Sci. U. S. A. 105 47 2008 18171 18175
63. Z. Zeng, and et al. Synthetic polymer nanoparticle-polysaccharide interactions: a systematic study J. Am. Chem. Soc. 134 5 2012 2681 2690
64. N.L. McFarlane, and et al. Calorimetric study of the adsorption of poly(ethylene oxide) and poly(vinyl pyrrolidone) onto cationic nanoparticles Langmuir 26 9 2010 6262 6267
65. 2 nanoparticles interacting with natural organic matter Water Res. 80 0 2015 139 148
66. G. Cavallaro, G. Lazzara, and S. Milioto Aqueous phase/nanoparticles interface: hydroxypropyl cellulose adsorption and desorption triggered by temperature and inorganic salts Soft Matter 8 13 2012 3627 3633
67. W.F. Tan, L.K. Koopal, and W. Norde Interaction between humic acid and lysozyme, studied by dynamic light scattering and isothermal titration calorimetry Environ. Sci. Technol. 43 3 2009 591 596
68. J. Broecker, C. Vargas, and S. Keller Revisiting the optimal c value for isothermal titration calorimetry Anal. Biochem. 418 2 2011 307 309
69. J. Tellinghuisen Isothermal titration calorimetry at very low c Anal. Biochem. 373 2 2008 395 397
70. W.B. Turnbull, and A.H. Daranas On the value of c: can low affinity systems be studied by isothermal titration calorimetry? J. Am. Chem. Soc. 125 48 2003 14859 14866
71. T. Schindler, and et al. A combined SAXS/SANS study for the in situ characterization of ligand shells on small nanoparticles: the case of ZnO Langmuir 31 37 2015 10130 10136
72. H.D.T. Mertens, and D.I. Svergun Structural characterization of proteins and complexes using small-angle X-ray solution scattering J. Struct. Biol. 172 1 2010 128 141
73. L. Zhang, and et al. Mapping hydration dynamics around a protein surface Proc. Natl. Acad. Sci. 104 47 2007 18461 18466
74. D. Leckband Measuring the forces that control protein interactions Annu. Rev. Biophys. Biomol. Struct. 29 1 2000 1 26
75. D. Suckau, M. Mak, and M. Przybylski Protein surface topology-probing by selective chemical modification and mass spectrometric peptide mapping Proc. Natl. Acad. Sci. 89 12 1992 5630 5634
76. D. Eisenberg Three-dimensional structure of membrane and surface proteins Annu. Rev. Biochem. 53 1 1984 595 623
77. H. Jans, and et al. Dynamic light scattering as a powerful tool for gold nanoparticle bioconjugation and biomolecular binding studies Anal. Chem. 81 22 2009 9425 9432
78. M.M. Wang, and et al. Probing the mechanism of plasma protein adsorption on Au and Ag nanoparticles with FT-IR spectroscopy Nanoscale 7 37 2015 15191 15196
79. W. Lin, and et al. A general approach to study the thermodynamics of ligand adsorption to colloidal surfaces demonstrated by means of catechols binding to zinc oxide quantum dots Chem. Mater. 27 1 2015 358 369
80. S.J. Dong, and et al. pH-dependent protein conformational changes in albumin: gold nanoparticle bioconjugates: a spectroscopic study Langmuir 23 5 2007 2714 2721
81. F. Rossi, and et al. Protein-nanoparticle interaction: identification of the ubiquitin-gold nanoparticle interaction site Nano Lett. 10 8 2010 3101 3105
82. W. Lin, and et al. Control of protein orientation on gold nanoparticles J. Phys. Chem. C 119 36 2015 21035 21043
83. M. Assfalg, and et al. The study of transient protein-nanoparticle interactions by solution NMR spectroscopy Biochim. Biophys. Acta, Proteins Proteomics 1864 1 2016 102 114
84. S. Shrivastava, and et al. Position-specific chemical modification and quantitative proteomics disclose protein orientation adsorbed on silica nanoparticles Nano Lett. 12 3 2012 1583 1587
85. J. Jamison, and et al. Altering protein surface charge with chemical modification modulates protein-gold nanoparticle aggregation J. Nanoparticle Res. 13 2 2011 625 636
86. M. Raible, and et al. Theoretical analysis of single-molecule force spectroscopy experiments: heterogeneity of chemical bonds Biophys. J. 90 11 2006 3851 3864
87. M. Raible, and et al. Theoretical analysis of dynamic force spectroscopy experiments on ligand-receptor complexes J. Biotechnol. 112 1-2 2004 13 23
88. T. Maki, and et al. Dynamic force spectroscopy of the specific interaction between the PDZ domain and its recognition peptides Langmuir 23 5 2007 2668 2673
89. A. Gomez-Casado, and et al. Probing multivalent interactions in a synthetic host-guest complex by dynamic force spectroscopy J. Am. Chem. Soc. 133 28 2011 10849 10857
90. C.I. Cheng, Y.-P. Chang, and Y.-H. Chu Biomolecular interactions and tools for their recognition: focus on the quartz crystal microbalance and its diverse surface chemistries and applications Chem. Soc. Rev. 41 5 2012 1947 1971
91. S. Franzen, and et al. Probing BSA binding to citrate-coated gold nanoparticles and surfaces Langmuir 21 20 2005 9303 9307
92. J.E. Tomaszewski, and et al. Adsorption of insecticidal Cry1Ab protein to humic substances. 2. Influence of humic and fulvic acid charge and polarity characteristics Environ. Sci. Technol. 46 18 2012 9932 9940
93. M. Sander, and et al. Adsorption of insecticidal Cry1Ab protein to humic substances. 1. Experimental approach and mechanistic aspects Environ. Sci. Technol. 46 18 2012 9923 9931