Protein-nanoparticle interaction: Identification of the ubiquitin-gold nanoparticle interaction site

Nano Letters

Volumn 10, Issue 8, 2010, Pages 3101-3105

  Calzolai, Luigi ^a   Franchini, Fabio ^a   Gilliland, Douglas ^a   Rossi, François ^a  

^a JOINT RESEARCH CENTRE   (Italy)

Author keywords

chemical shift mapping; Gold nanoparticles; NMR; protein nanoparticle interactions

Indexed keywords

CHEMICAL SHIFT MAPPING; CHEMICAL SHIFT PERTURBATIONS; EXPERIMENTAL DATA; GOLD NANOPARTICLES; NANOPARTICLE INTERACTION; PHYSIOLOGICAL CONDITION; UBIQUITIN;

AMINO ACIDS; CHEMICAL SHIFT; GOLD; ORGANIC ACIDS; PROTEINS; STRUCTURAL ANALYSIS;

NANOPARTICLES;

GOLD; METAL NANOPARTICLE; PROTEIN;

ARTICLE; BINDING SITE; CHEMICAL STRUCTURE; CHEMISTRY; HUMAN; NUCLEAR MAGNETIC RESONANCE;

BINDING SITES; GOLD; HUMANS; METAL NANOPARTICLES; MODELS, MOLECULAR; NUCLEAR MAGNETIC RESONANCE, BIOMOLECULAR; PROTEINS;

EID: 77955562565     PISSN: 15306984     EISSN: 15306992     Source Type: Journal    
DOI: 10.1021/nl101746v     Document Type: Article

References (23)

1. Panyam, J.; Labhasetwar, V. Biodegradable nanoparticles for drug and gene delivery to cells and tissue Adv. Drug Delivery Rev. 2003, 55, 329-347
2. Michalet, X. Quantum dots for live cells, in vivo imaging, and diagnostics Science 2005, 307, 538-544
3. Lundqvist, M. Nanoparticle size and surface properties determine the protein corona with possible implications for biological impacts Proc. Natl. Acad. Sci. U.S.A. 2008, 105, 14265-14270
4. Lynch, I.; Dawson, K. A.; Linse, S. Detecting cryptic epitopes created by nanoparticles Sci. STKE 2006, pe14
5. Gray, J. J. The interaction of proteins with solid surfaces Curr. Opin. Struct. Biol. 2004, 14, 110-115
6. Vaynberg, J.; Qin, J. Weak protein-protein interactions as probed by NMR spectroscopy Trends Biotechnol. 2006, 24, 22-27
7. Engel, M. F.; Visser, A. J.; van Mierlo, C. P. Conformation and orientation of a protein folding intermediate trapped by adsorption Proc. Natl. Acad. Sci. U.S.A. 2004, 101, 11316-11321
8. Pellecchia, M.; Sem, D. S.; Wuthrich, K. NMR in drug discovery Nat. Rev. Drug Discovery 2002, 1, 211-219
9. Zuiderweg, E. R. Mapping protein-protein interactions in solution by NMR spectroscopy Biochemistry 2002, 41, 1-7
10. Simonelli, L. Rapid structural characterization of human antibody-antigen complexes through experimentally validated computational docking J. Mol. Biol. 2010, 396, 1491-1507
11. Vijay-Kumar, S.; Bugg, C. E.; Cook, W. J. Structure of ubiquitin refined at 1.8 A resolution J. Mol. Biol. 1987, 194, 531-544
12. Daniel, M. C.; Astruc, D. Gold nanoparticles: assembly, supramolecular chemistry, quantum-size-related properties, and applications toward biology, catalysis, and nanotechnology Chem. Rev. 2004, 104, 293-346
13. Delfino, I.; Cannistraro, S. Optical investigation of the electron transfer protein azurin-gold nanoparticle system Biophys. Chem. 2009, 139, 1-7
14. Uversky, V. N. Use of fast protein size-exclusion liquid chromatography to study the unfolding of proteins which denature through the molten globule Biochemistry 1993, 32, 13288-13298
15. Rocker, C.; Potzl, M.; Zhang, F.; Parak, W. J.; Nienhaus, G. U. A quantitative fluorescence study of protein monolayer formation on colloidal nanoparticles Nat. Nanotechnol. 2009, 4, 577-580
16. Mattoussi, H. Self-Assembly of CdSe; ZnS Quantum Dot Bioconjugates Using an Engineered Recombinant Protein J. Am. Chem. Soc. 2000, 122, 12142-12150
17. Wüthrich, K. NMR of proteins and nucleic acids; Wiley: New York;, 1986.
18. Ernst, R. R.; Bodenhausen, G.; Wokaun, A. Principles of nuclear magnetic resonance in one and two dimensions; Clarendon Press: Oxford, and Oxford University Press: New York, 1987.
19. Makrodimitris, K.; Masica, D. L.; Kim, E. T.; Gray, J. J. Structure prediction of protein-solid surface interactions reveals a molecular recognition motif of statherin for hydroxyapatite J. Am. Chem. Soc. 2007, 129, 13713-13722
20. Calzolari, A. Hydroxyl-rich beta-sheet adhesion to the gold surface in water by first-principle simulations J. Am. Chem. Soc. 2010, 132, 4790-4795
21. Lensink, M. F.; Mendez, R.; Wodak, S. J. Docking and scoring protein complexes: CAPRI 3rd Edition Proteins 2007, 69, 704-718
22. Horst, R. Direct NMR observation of a substrate protein bound to the chaperonin GroEL Proc. Natl. Acad. Sci. U.S.A. 2005, 102, 12748-12753
23. Pervushin, K.; Riek, R.; Wider, G.; Wuthrich, K. Attenuated T2 relaxation by mutual cancellation of dipole-dipole coupling and chemical shift anisotropy indicates an avenue to NMR structures of very large biological macromolecules in solution Proc. Natl. Acad. Sci. U.S.A. 1997, 94, 12366-12371