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Volumn 32, Issue 5, 2016, Pages 713-721

Probabilistic models of genetic variation in structured populations applied to global human studies

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; GENETIC VARIATION; GENOTYPE; HUMAN; PROBABILITY; SOFTWARE; STATISTICAL MODEL;

EID: 84960128249     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btv641     Document Type: Article
Times cited : (29)

References (38)
  • 1
    • 84975742565 scopus 로고    scopus 로고
    • A map of human genome variation from population-scale sequencing
    • 1000 Genomes Project Consortium
    • 1000 Genomes Project Consortium (2010) A map of human genome variation from population-scale sequencing. Nature. 467, 1061-1073.
    • (2010) Nature , vol.467 , pp. 1061-1073
  • 2
    • 0036911353 scopus 로고    scopus 로고
    • Interrogating a high-density SNP map for signatures of natural selection
    • Akey J.M, et al. (2002). Interrogating a high-density SNP map for signatures of natural selection. Genome Res., 12, 1805-1814.
    • (2002) Genome Res , vol.12 , pp. 1805-1814
    • Akey, J.M.1
  • 3
    • 69749099417 scopus 로고    scopus 로고
    • Fast model-based estimation of ancestry in unrelated individuals
    • Alexander D.H, et al. (2009). Fast model-based estimation of ancestry in unrelated individuals. Genome Res., 19, 1655-1664.
    • (2009) Genome Res , vol.19 , pp. 1655-1664
    • Alexander, D.H.1
  • 4
    • 77955166399 scopus 로고    scopus 로고
    • Population structure and cryptic relatedness in genetic association studies
    • Astle W, and Balding D.J. (2009). Population structure and cryptic relatedness in genetic association studies. Stat. Sci., 24, 451-471.
    • (2009) Stat. Sci , vol.24 , pp. 451-471
    • Astle, W.1    Balding, D.J.2
  • 5
    • 33847257340 scopus 로고    scopus 로고
    • Restarted block Lanczos Bidiagonalization methods
    • Baglama J, and Reichel L. (2006). Restarted block Lanczos Bidiagonalization methods. Numer. Algorithms. 43, 251-272.
    • (2006) Numer. Algorithms , vol.43 , pp. 251-272
    • Baglama, J.1    Reichel, L.2
  • 6
    • 0029199341 scopus 로고
    • A method for quantifying differentiation between populations at multi-Allelic loci and its implications for investigating identity and paternity
    • Balding D.J, and Nichols R.A. (1995) A method for quantifying differentiation between populations at multi-Allelic loci and its implications for investigating identity and paternity. Genetica. 96, 3-12.
    • (1995) Genetica , vol.96 , pp. 3-12
    • Balding, D.J.1    Nichols, R.A.2
  • 7
    • 0035893741 scopus 로고    scopus 로고
    • The foxp1 winged helix transcription factor is a novel candidate tumor suppressor gene on chromosome 3p
    • Banham A.H, et al. (2001). The foxp1 winged helix transcription factor is a novel candidate tumor suppressor gene on chromosome 3p. Cancer Res., 61, 8820-8829.
    • (2001) Cancer Res , vol.61 , pp. 8820-8829
    • Banham, A.H.1
  • 9
    • 84872417132 scopus 로고    scopus 로고
    • Ctnna3 (a-catenin) gene variants are associated with diisocyanate asthma: A replication study in a Caucasian worker population
    • Bernstein D.I, et al. (2013). Ctnna3 (a-catenin) gene variants are associated with diisocyanate asthma: a replication study in a Caucasian worker population. Toxicol. Sci., 131, 242-246.
    • (2013) Toxicol. Sci , vol.131 , pp. 242-246
    • Bernstein, D.I.1
  • 10
    • 0037066430 scopus 로고    scopus 로고
    • A human genome diversity cell line panel
    • Cann H.M, et al. (2002) A human genome diversity cell line panel. Science. 296, 261-262.
    • (2002) Science , vol.296 , pp. 261-262
    • Cann, H.M.1
  • 11
    • 84928983540 scopus 로고    scopus 로고
    • Statistical significance of variables driving systematic variation
    • Chung N.C, and Storey J.D. (2015). Statistical significance of variables driving systematic variation. Bioinformatics. 31, 545-554.
    • (2015) Bioinformatics , vol.31 , pp. 545-554
    • Chung, N.C.1    Storey, J.D.2
  • 12
    • 84899014910 scopus 로고    scopus 로고
    • A generalization of principal component analysis to the exponential family
    • Dietterich T.G, et al. (eds MIT Press
    • Collins M, et al. (2002) A generalization of principal component analysis to the exponential family. In: Dietterich T.G, et al. (eds), Proceedings of Advances in Neural Information Processing Systems (NIPS), MIT Press, vol. 14, pp. 617-624.
    • (2002) Proceedings of Advances in Neural Information Processing Systems (NIPS , vol.14 , pp. 617-624
    • Collins, M.1
  • 13
    • 67651015954 scopus 로고    scopus 로고
    • The role of geography in human adaptation
    • Coop G, et al. (2009). The role of geography in human adaptation. PLoS Genet., 5, e1000500.
    • (2009) PLoS Genet , vol.5 , pp. e1000500
    • Coop, G.1
  • 14
    • 84878484584 scopus 로고    scopus 로고
    • Analysis of the genetic basis of disease in the context of worldwide human relationships and migration
    • Corona E, et al. (2013). Analysis of the genetic basis of disease in the context of worldwide human relationships and migration. PLoS Genet., 9, e1003447.
    • (2013) PLoS Genet , vol.9 , pp. e1003447
    • Corona, E.1
  • 15
    • 78049415423 scopus 로고    scopus 로고
    • Analysis of population structure: A unifying framework and novel methods based on sparse factor analysis
    • Engelhardt B.E, and Stephens M. (2010). Analysis of population structure: a unifying framework and novel methods based on sparse factor analysis. PLoS Genet., 6, e1001117.
    • (2010) PLoS Genet , vol.6 , pp. e1001117
    • Engelhardt, B.E.1    Stephens, M.2
  • 16
    • 79959601185 scopus 로고    scopus 로고
    • Genome wide association study identifies kcnma1 contributing to human obesity
    • Jiao H, et al. (2011). Genome wide association study identifies kcnma1 contributing to human obesity. BMC Med. Genom., 4, 51.
    • (2011) BMC Med. Genom , vol.4 , pp. 51
    • Jiao, H.1
  • 18
    • 84874048561 scopus 로고    scopus 로고
    • Modeling recent human evolution in mice by expression of a selected EDAR variant
    • Kamberov Y, et al. (2013). Modeling recent human evolution in mice by expression of a selected EDAR variant. Cell. 152, 691-702.
    • (2013) Cell , vol.152 , pp. 691-702
    • Kamberov, Y.1
  • 19
    • 29144485743 scopus 로고    scopus 로고
    • Slc24a5, a putative cation exchanger, affects pigmentation in zebrafish and humans
    • Lamason R.L, et al. (2005). Slc24a5, a putative cation exchanger, affects pigmentation in zebrafish and humans. Science. 310, 1782-1786.
    • (2005) Science , vol.310 , pp. 1782-1786
    • Lamason, R.L.1
  • 21
    • 77956762680 scopus 로고    scopus 로고
    • Interview with Luigi Luca Cavalli-Sforza: Past research and directions for future investigations in human population genetics
    • Manni F. (2010). Interview with Luigi Luca Cavalli-Sforza: past research and directions for future investigations in human population genetics. Hum. Biol., 82, 245-266.
    • (2010) Hum. Biol , vol.82 , pp. 245-266
    • Manni, F.1
  • 23
    • 0018080152 scopus 로고
    • Synthetic maps of human gene frequencies in Europeans
    • Menozzi P, et al. (1978). Synthetic maps of human gene frequencies in Europeans. Science. 201, 786-792.
    • (1978) Science , vol.201 , pp. 786-792
    • Menozzi, P.1
  • 24
    • 42649093791 scopus 로고    scopus 로고
    • Interpreting principal component analyses of spatial population genetic variation
    • Novembre J, and Stephens M. (2008). Interpreting principal component analyses of spatial population genetic variation. Nat. Genet., 40, 646-649.
    • (2008) Nat. Genet , vol.40 , pp. 646-649
    • Novembre, J.1    Stephens, M.2
  • 25
    • 78149499571 scopus 로고    scopus 로고
    • Brk/ptk6 signaling in normal and cancer cell models
    • Ostrander J.H, et al. (2010). Brk/ptk6 signaling in normal and cancer cell models. Curr. Opin. Pharmacol., 10, 662-669.
    • (2010) Curr. Opin. Pharmacol , vol.10 , pp. 662-669
    • Ostrander, J.H.1
  • 26
    • 0034118493 scopus 로고    scopus 로고
    • Inference of population structure using multilocus genotype data
    • Pritchard J.K, et al. (2000). Inference of population structure using multilocus genotype data. Genetics. 155, 945-959.
    • (2000) Genetics , vol.155 , pp. 945-959
    • Pritchard, J.K.1
  • 27
    • 84902485214 scopus 로고    scopus 로고
    • FastSTRUCTURE: Variational inference of population structure in large SNP datasets
    • Raj A, et al. (2014). fastSTRUCTURE: Variational inference of population structure in large SNP datasets. Genetics. 197, 573-589.
    • (2014) Genetics , vol.197 , pp. 573-589
    • Raj, A.1
  • 28
    • 0007496903 scopus 로고    scopus 로고
    • A problem with synthetic maps: Reply to Sokal et al
    • Rendine S, et al. (1999) A problem with synthetic maps: Reply to Sokal et al. Hum. Biol., 71, 15-25.
    • (1999) Hum. Biol , vol.71 , pp. 15-25
    • Rendine, S.1
  • 29
    • 0037147189 scopus 로고    scopus 로고
    • Genetic structure of human populations
    • Rosenberg N.A, et al. (2002). Genetic structure of human populations. Science. 298, 2381-2385.
    • (2002) Science , vol.298 , pp. 2381-2385
    • Rosenberg, N.A.1
  • 30
    • 85049161537 scopus 로고    scopus 로고
    • Clines, clusters, and the effect of study design on the inference of human population structure
    • Rosenberg N.A, et al. (2005). Clines, clusters, and the effect of study design on the inference of human population structure. PLoS Genet., 1, e70.
    • (2005) PLoS Genet , vol.1 , pp. e70
    • Rosenberg, N.A.1
  • 31
    • 35349012592 scopus 로고    scopus 로고
    • Genome-wide detection and characterization of positive selection in human populations
    • Sabeti P.C, et al. (2007). Genome-wide detection and characterization of positive selection in human populations. Nature. 449, 913-918.
    • (2007) Nature , vol.449 , pp. 913-918
    • Sabeti, P.C.1
  • 32
    • 0032006886 scopus 로고    scopus 로고
    • Kif3c, a novel member of the kinesin superfamily: Sequence, expression, and mapping to human chromosome 2 at 2p23
    • Sardella M, et al (1998). Kif3c, a novel member of the kinesin superfamily: sequence, expression, and mapping to human chromosome 2 at 2p23. Genomics. 47, 405-408.
    • (1998) Genomics , vol.47 , pp. 405-408
    • Sardella, M.1
  • 33
    • 80054051092 scopus 로고    scopus 로고
    • Foxp1, an estrogen-inducible transcription factor, modulates cell proliferation in breast cancer cells and 5-year recurrence-free survival of patients with tamoxifen-Treated breast cancer
    • Shigekawa T, et al. (2011). Foxp1, an estrogen-inducible transcription factor, modulates cell proliferation in breast cancer cells and 5-year recurrence-free survival of patients with tamoxifen-Treated breast cancer. Hormon. Cancer. 2, 286-297.
    • (2011) Hormon. Cancer , vol.2 , pp. 286-297
    • Shigekawa, T.1
  • 34
    • 0033084035 scopus 로고    scopus 로고
    • A problem with synthetic maps
    • Sokal R.R, et al. (1999) A problem with synthetic maps. Hum. Biol., 71, 1-13.
    • (1999) Hum. Biol , vol.71 , pp. 1-13
    • Sokal, R.R.1
  • 35
    • 84929130444 scopus 로고    scopus 로고
    • Testing for genetic associations in arbitrarily structured populations
    • Song M, et al. (2015). Testing for genetic associations in arbitrarily structured populations. Nat. Genet., 47, 550-554.
    • (2015) Nat. Genet , vol.47 , pp. 550-554
    • Song, M.1
  • 36
    • 33748745768 scopus 로고    scopus 로고
    • Tbc1d1 is a candidate for a severe obesity gene and evidence for a gene/gene interaction in obesity predisposition
    • Stone S, et al. (2006). Tbc1d1 is a candidate for a severe obesity gene and evidence for a gene/gene interaction in obesity predisposition. Hum. Mol. Genet., 15, 2709-2720.
    • (2006) Hum. Mol. Genet , vol.15 , pp. 2709-2720
    • Stone, S.1
  • 37
    • 17644402806 scopus 로고    scopus 로고
    • Estimation of individual admixture: Analytical and study design considerations
    • Tang H, et al. (2005). Estimation of individual admixture: analytical and study design considerations. Genet. Epidemiol., 28, 289-301.
    • (2005) Genet. Epidemiol , vol.28 , pp. 289-301
    • Tang, H.1
  • 38
    • 84863981000 scopus 로고    scopus 로고
    • Estimating kinship in admixed populations
    • Thornton T, et al. (2012). Estimating kinship in admixed populations. Am. J. Hum. Genet., 91, 122-138.
    • (2012) Am. J. Hum. Genet , vol.91 , pp. 122-138
    • Thornton, T.1


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