-
1
-
-
79954533893
-
PubMed and beyond: A survey of web tools for searching biomedical literature
-
Lu Z. PubMed and beyond: a survey of web tools for searching biomedical literature. Database (Oxford) 2011;2011: baq036.
-
(2011)
Database (Oxford) 2011
-
-
Lu, Z.1
-
2
-
-
84927517824
-
Accessing biomedical literature in the current information landscape
-
Khare R, Leaman R, Lu Z. Accessing biomedical literature in the current information landscape. Methods Mol Biol 2014; 1159:11-31.
-
(2014)
Methods Mol Biol
, vol.1159
, pp. 11-31
-
-
Khare, R.1
Leaman, R.2
Lu, Z.3
-
4
-
-
31144432293
-
Literature mining for the biologist: From information retrieval to biological discovery
-
Jensen LJ, Saric J, Bork P. Literature mining for the biologist: from information retrieval to biological discovery. Nat Rev Genet 2006;7:119-29.
-
(2006)
Nat Rev Genet
, vol.7
, pp. 119-129
-
-
Jensen, L.J.1
Saric, J.2
Bork, P.3
-
5
-
-
0742321913
-
Mining the biomedical literature in the genomic era: An overview
-
Shatkay H, Feldman R. Mining the biomedical literature in the genomic era: an overview. J Comput Biol 2003;10(6):821-55.
-
(2003)
J Comput Biol
, vol.10
, Issue.6
, pp. 821-855
-
-
Shatkay, H.1
Feldman, R.2
-
6
-
-
33344465511
-
Biomedical language processing: What's beyond PubMed?
-
Hunter L, Cohen KB. Biomedical language processing: what's beyond PubMed? Mol Cell 2006;21(5):589-94.
-
(2006)
Mol Cell
, vol.21
, Issue.5
, pp. 589-594
-
-
Hunter, L.1
Cohen, K.B.2
-
7
-
-
27744564300
-
Informatics challenges for the impending patient information explosion
-
Berner ES, Moss J. Informatics challenges for the impending patient information explosion. J Am Med Inform Assoc 2005; 12(6):614-17.
-
(2005)
J Am Med Inform Assoc
, vol.12
, Issue.6
, pp. 614-617
-
-
Berner, E.S.1
Moss, J.2
-
8
-
-
34447329864
-
Electronic health record use and the quality of ambulatory care in the United States
-
Linder JA, Ma J, Bates DW, et al. Electronic health record use and the quality of ambulatory care in the United States. Arch Intern Med 2007;167:1400-5.
-
(2007)
Arch Intern Med
, vol.167
, pp. 1400-1405
-
-
Linder, J.A.1
Ma, J.2
Bates, D.W.3
-
9
-
-
19944415036
-
Natural language processing and systems biology
-
Cohen KB, Hunter L. Natural language processing and systems biology. Artif Intell Syst Biol 2004:147-75.
-
(2004)
Artif Intell Syst Biol
, pp. 147-175
-
-
Cohen, K.B.1
Hunter, L.2
-
12
-
-
80053423937
-
The Protein- Protein Interaction tasks of BioCreative III: Classification/ ranking of articles and linking bio-ontology concepts to full text
-
Krallinger M, Vazquez M, Leitner F, et al. The Protein- Protein Interaction tasks of BioCreative III: classification/ ranking of articles and linking bio-ontology concepts to full text. BMC Bioinformatics 2011;12 (Suppl 8):S3.
-
(2011)
BMC Bioinformatics
, vol.12
, pp. S3
-
-
Krallinger, M.1
Vazquez, M.2
Leitner, F.3
-
13
-
-
34548493473
-
Automating document classification for the Immune Epitope Database
-
Wang P, Morgan AA, Zhang Q, et al. Automating document classification for the Immune Epitope Database. BMC Bioinformatics 2007;8:269.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 269
-
-
Wang, P.1
Morgan, A.A.2
Zhang, Q.3
-
15
-
-
58149237022
-
Evaluation of query expansion using MeSH in PubMed
-
Lu Z, Kim W, Wilbur WJ. Evaluation of query expansion using MeSH in PubMed. Inf Retr Boston 2009;12(1):69-80.
-
(2009)
Inf Retr Boston
, vol.12
, Issue.1
, pp. 69-80
-
-
Lu, Z.1
Kim, W.2
Wilbur, W.J.3
-
16
-
-
57149140268
-
Evaluating relevance ranking strategies for MEDLINE retrieval
-
Lu Z, Kim W, Wilbur WJ. Evaluating relevance ranking strategies for MEDLINE retrieval. J Am Med Inform Assoc 2009;16(1):32-6.
-
(2009)
J Am Med Inform Assoc
, vol.16
, Issue.1
, pp. 32-36
-
-
Lu, Z.1
Kim, W.2
Wilbur, W.J.3
-
17
-
-
33750289197
-
The TREC 2004 genomics track categorization task: Classifying full text biomedical documents
-
Cohen AM, Hersh WR. The TREC 2004 genomics track categorization task: classifying full text biomedical documents. J Biomed Discov Collab 2006;1:4.
-
(2006)
J Biomed Discov Collab
, vol.1
, pp. 4
-
-
Cohen, A.M.1
Hersh, W.R.2
-
19
-
-
51049088875
-
Overview of the protein-protein interaction annotation extraction task of BioCreative II
-
Krallinger M, Leitner F, Rodriguez-Penagos C, et al. Overview of the protein-protein interaction annotation extraction task of BioCreative II. Genome Biol 2008;9 (Suppl 2):S4.
-
(2008)
Genome Biol
, vol.9
, pp. S4
-
-
Krallinger, M.1
Leitner, F.2
Rodriguez-Penagos, C.3
-
20
-
-
84875589774
-
Literature mining of protein-residue associations with graph rules learned through distant supervision
-
Ravikumar K, Liu H, Cohn JD, et al. Literature mining of protein-residue associations with graph rules learned through distant supervision. J Biomed Semantics 2012;3 (Suppl 3):S2.
-
(2012)
J Biomed Semantics
, vol.3
, pp. S2
-
-
Ravikumar, K.1
Liu, H.2
Cohn, J.D.3
-
22
-
-
84882744737
-
Evaluating temporal relations in clinical text: 2012 i2b2 Challenge
-
Sun W, Rumshisky A, Uzuner O. Evaluating temporal relations in clinical text: 2012 i2b2 Challenge. J Am Med Inform Assoc 2013;20(5):806-13.
-
(2013)
J Am Med Inform Assoc
, vol.20
, Issue.5
, pp. 806-813
-
-
Sun, W.1
Rumshisky, A.2
Uzuner, O.3
-
25
-
-
4944235422
-
Evaluation of text data mining for database curation: Lessons learned from the KDD Challenge Cup
-
Yeh AS, Hirschman L, Morgan AA. Evaluation of text data mining for database curation: lessons learned from the KDD Challenge Cup. Bioinformatics 2003;19 (Suppl 1):i331-9.
-
(2003)
Bioinformatics
, vol.19
, pp. i331-i339
-
-
Yeh, A.S.1
Hirschman, L.2
Morgan, A.A.3
-
26
-
-
84876499465
-
Accelerating literature curation with text-mining tools: A case study of using PubTator to curate genes in PubMed abstracts
-
Wei CH, Harris BR, Li D, et al. Accelerating literature curation with text-mining tools: a case study of using PubTator to curate genes in PubMed abstracts. Database (Oxford) 2012;2012:bas041.
-
(2012)
Database (Oxford) 2012
-
-
Wei, C.H.1
Harris, B.R.2
Li, D.3
-
27
-
-
84925545894
-
Hybrid curation of gene-mutation relations combining automated extraction and crowdsourcing
-
Burger JD, Doughty E, Khare R, et al. Hybrid curation of gene-mutation relations combining automated extraction and crowdsourcing. Database (Oxford) 2014;2014:bau-094.
-
(2014)
Database (Oxford) 2014
-
-
Burger, J.D.1
Doughty, E.2
Khare, R.3
-
28
-
-
84919839429
-
LabeledIn: Cataloging labeled indications for human drugs
-
Khare R, Li J, Lu Z. LabeledIn: cataloging labeled indications for human drugs. J Biomed Inform 2014;52:448-56.
-
(2014)
J Biomed Inform
, vol.52
, pp. 448-456
-
-
Khare, R.1
Li, J.2
Lu, Z.3
-
30
-
-
27744487007
-
Text mining and ontologies in biomedicine: Making sense of raw text
-
Spasic I, Ananiadou S, McNaught J, et al. Text mining and ontologies in biomedicine: making sense of raw text. Brief Bioinform 2005;6(3):239-51.
-
(2005)
Brief Bioinform
, vol.6
, Issue.3
, pp. 239-251
-
-
Spasic, I.1
Ananiadou, S.2
McNaught, J.3
-
31
-
-
77953917404
-
Event extraction for systems biology by text mining the literature
-
Ananiadou S, Pyysalo S, Tsujii J, et al. Event extraction for systems biology by text mining the literature. Trends Biotechnol 2010;28(7):381-90.
-
(2010)
Trends Biotechnol
, vol.28
, Issue.7
, pp. 381-390
-
-
Ananiadou, S.1
Pyysalo, S.2
Tsujii, J.3
-
32
-
-
85026972232
-
Advances of Biomedical Text Mining for Semantic Search
-
Ananiadou S. Advances of Biomedical Text Mining for Semantic Search. Web Science in the Medical Domain 2011;5.
-
(2011)
Web Science in the Medical Domain
, vol.5
-
-
Ananiadou, S.1
-
33
-
-
84883572716
-
PubTator: A web-based text mining tool for assisting biocuration
-
Wei CH, Kao HY, Lu Z. PubTator: a web-based text mining tool for assisting biocuration. Nucleic Acids Res 2013;41: W518-22.
-
(2013)
Nucleic Acids Res
, vol.41
, pp. W518-W522
-
-
Wei, C.H.1
Kao, H.Y.2
Lu, Z.3
-
34
-
-
84865565208
-
MyMiner: A web application for computer-assisted biocuration and text annotation
-
Salgado D, Krallinger M, Depaule M, et al. MyMiner: a web application for computer-assisted biocuration and text annotation. Bioinformatics 2012;28(17):2285-7.
-
(2012)
Bioinformatics
, vol.28
, Issue.17
, pp. 2285-2287
-
-
Salgado, D.1
Krallinger, M.2
Depaule, M.3
-
35
-
-
84995046262
-
A large-scale experiment to assess protein structure prediction methods
-
Moult J, Pedersen JT, Judson R, et al. A large-scale experiment to assess protein structure prediction methods. Proteins 1995;23(3):ii-v.
-
(1995)
Proteins
, vol.23
, Issue.3
-
-
Moult, J.1
Pedersen, J.T.2
Judson, R.3
-
36
-
-
84893021599
-
Critical assessment of methods of protein structure prediction (CASP)-round x
-
Moult J, Fidelis K, Kryshtafovych A, et al. Critical assessment of methods of protein structure prediction (CASP)-round x. Proteins 2014;82 (Suppl 2):1-6.
-
(2014)
Proteins
, vol.82
, pp. 1-6
-
-
Moult, J.1
Fidelis, K.2
Kryshtafovych, A.3
-
37
-
-
17244380380
-
A survey of current work in biomedical text mining
-
Cohen AM, Hersh WR. A survey of current work in biomedical text mining. Brief Bioinform 2005;6(1):57-71.
-
(2005)
Brief Bioinform
, vol.6
, Issue.1
, pp. 57-71
-
-
Cohen, A.M.1
Hersh, W.R.2
-
39
-
-
0742306576
-
Background and Overview for KDD Cup 2002 Task 1: Information extraction from biomedical articles
-
Yeh A, Hirschman L, Morgan A. Background and Overview for KDD Cup 2002 Task 1: information extraction from biomedical articles. ACM SIGKDD Explor Newsl 2002;4(2):87-9.
-
(2002)
ACM SIGKDD Explor Newsl
, vol.4
, Issue.2
, pp. 87-89
-
-
Yeh, A.1
Hirschman, L.2
Morgan, A.3
-
47
-
-
84960142055
-
Filippov, et al
-
Overview of the TREC 2011 Chemical IR Track. In: Proceedings of the 20th Text Retrieval Conference
-
Lupu MH, Gurulingappa I. Filippov, et al. Overview of the TREC 2011 Chemical IR Track. In: Proceedings of the 20th Text Retrieval Conference, 2011.
-
(2011)
-
-
Lupu, M.H.1
Gurulingappa, I.2
-
49
-
-
33947359082
-
BioCreAtIvE task 1A: Gene mention finding evaluation
-
Yeh A, Morgan A, Colosimo M, et al. BioCreAtIvE task 1A: gene mention finding evaluation. BMC Bioinformatics 2005;6 (Suppl 1):S2.
-
(2005)
BMC Bioinformatics
, vol.6
, pp. S2
-
-
Yeh, A.1
Morgan, A.2
Colosimo, M.3
-
50
-
-
33947304181
-
Overview of BioCreAtIvE: Critical assessment of information extraction for biology
-
Hirschman L, Yeh A, Blaschke C, et al. Overview of BioCreAtIvE: critical assessment of information extraction for biology. BMC Bioinformatics 2005;6 (Suppl 1):S1.
-
(2005)
BMC Bioinformatics
, vol.6
, pp. S1
-
-
Hirschman, L.1
Yeh, A.2
Blaschke, C.3
-
52
-
-
33947321307
-
Overview of BioCreAtIvE task 1B: Normalized gene lists
-
Hirschman L, Colosimo M, Morgan A, et al. Overview of BioCreAtIvE task 1B: normalized gene lists. BMC Bioinformatics 2005;6 (Suppl 1):S11.
-
(2005)
BMC Bioinformatics
, vol.6
, pp. S11
-
-
Hirschman, L.1
Colosimo, M.2
Morgan, A.3
-
53
-
-
41349103793
-
Overview of BioCreative II gene normalization
-
Morgan AA, Lu Z, Wang X, et al. Overview of BioCreative II gene normalization. Genome Biol 2008;9 (Suppl 2):S3.
-
(2008)
Genome Biol
, vol.9
, pp. S3
-
-
Morgan, A.A.1
Lu, Z.2
Wang, X.3
-
54
-
-
80052774027
-
The gene normalization task in BioCreative III
-
Lu Z, Kao HY, Wei CH, et al. The gene normalization task in BioCreative III. BMC Bioinformatics 2011;12 (Suppl 8):S2.
-
(2011)
BMC Bioinformatics
, vol.12
, pp. S2
-
-
Lu, Z.1
Kao, H.Y.2
Wei, C.H.3
-
55
-
-
84876219466
-
Collaborative biocuration-text-mining development task for document prioritization for curation
-
Wiegers TC, Davis AP, Mattingly CJ. Collaborative biocuration-text-mining development task for document prioritization for curation. Database (Oxford) 2012;2012: bas037.
-
(2012)
Database (Oxford) 2012
-
-
Wiegers, T.C.1
Davis, A.P.2
Mattingly, C.J.3
-
57
-
-
84925647188
-
The CHEMDNER corpus of chemicals and drugs and its annotation principles
-
Krallinger M, Rabal O, Leitner F, et al. The CHEMDNER corpus of chemicals and drugs and its annotation principles. J Cheminform 2015;7:S2.
-
(2015)
J Cheminform
, vol.7
, pp. S2
-
-
Krallinger, M.1
Rabal, O.2
Leitner, F.3
-
58
-
-
84949749640
-
Assessment of NER solutions against the first and second CALBC Silver Standard Corpus
-
Rebholz-Schuhmann D, Jimeno Yepes A, Li C, et al. Assessment of NER solutions against the first and second CALBC Silver Standard Corpus. J Biomed Semantics 2011;2 (Suppl 5):S11.
-
(2011)
J Biomed Semantics
, vol.2
, pp. S11
-
-
Rebholz-Schuhmann, D.1
Jimeno Yepes, A.2
Li, C.3
-
63
-
-
77957147478
-
The FEBS Letters SDA corpus: A collection of protein interaction articles with high quality annotations for the BioCreative II.5 online challenge and the text mining community
-
Leitner F, Krallinger M, Cesareni G, et al. The FEBS Letters SDA corpus: a collection of protein interaction articles with high quality annotations for the BioCreative II.5 online challenge and the text mining community. FEBS Lett 2010;584(19):4129-30.
-
(2010)
FEBS Lett
, vol.584
, Issue.19
, pp. 4129-4130
-
-
Leitner, F.1
Krallinger, M.2
Cesareni, G.3
-
65
-
-
80053244362
-
Recommending MeSH terms for annotating biomedical articles
-
Huang M, Neveol A, Lu Z. Recommending MeSH terms for annotating biomedical articles. J Am Med Inform Assoc 2011; 18(5):660-7.
-
(2011)
J Am Med Inform Assoc
, vol.18
, Issue.5
, pp. 660-667
-
-
Huang, M.1
Neveol, A.2
Lu, Z.3
-
67
-
-
84981225211
-
Results of the BioASQ Track of the Question Answering Lab at CLEF 2014
-
Results of the BioASQ Track of the Question Answering Lab at CLEF 2014
-
Balikas G, Partalas I, Ngomo ACN, et al. Results of the BioASQ Track of the Question Answering Lab at CLEF 2014. In: Results of the BioASQ Track of the Question Answering Lab at CLEF 2014. 2014. 1181-93.
-
(2014)
, pp. 1181-1193
-
-
Balikas, G.1
Partalas, I.2
Ngomo, A.C.N.3
-
69
-
-
85122446644
-
The Genia Event Extraction Shared Task, 2013 Edition - Overview
-
Kim JD, Wang Y, Yasunori Y. The Genia Event Extraction Shared Task, 2013 Edition - Overview. In: Proceedings of the BioNLP Shared Task 2013 Workshop, 2013, 8-15.
-
(2013)
Proceedings of the BioNLP Shared Task 2013 Workshop
, pp. 8-15
-
-
Kim, J.D.1
Wang, Y.2
Yasunori, Y.3
-
72
-
-
84866453775
-
Overview of the ID, EPI and REL tasks of BioNLP Shared Task 2011
-
Pyysalo S, Ohta T, Rak R, et al. Overview of the ID, EPI and REL tasks of BioNLP Shared Task 2011. BMC Bioinformatics 2012;13 (Suppl 11):S2.
-
(2012)
BMC Bioinformatics
, vol.13
, pp. S2
-
-
Pyysalo, S.1
Ohta, T.2
Rak, R.3
-
75
-
-
84874280242
-
The Genia Event and Protein Coreference tasks of the BioNLP shared task 2011
-
Kim JD, Nguyen N, Wang Y, et al. The Genia Event and Protein Coreference tasks of the BioNLP shared task 2011. BMC Bioinformatics 2012;13 (Suppl 11):S1.
-
(2012)
BMC Bioinformatics
, vol.13
, pp. S1
-
-
Kim, J.D.1
Nguyen, N.2
Wang, Y.3
-
79
-
-
34548508913
-
Evaluating the state-of-theart in automatic de-identification
-
Uzuner O, Luo Y, Szolovits P. Evaluating the state-of-theart in automatic de-identification. J Am Med Inform Assoc 2007;14(5):550-63.
-
(2007)
J Am Med Inform Assoc
, vol.14
, Issue.5
, pp. 550-563
-
-
Uzuner, O.1
Luo, Y.2
Szolovits, P.3
-
80
-
-
34548516061
-
Identifying patient smoking status from medical discharge records
-
Uzuner O, Goldstein I, Luo Y, et al. Identifying patient smoking status from medical discharge records. J Am Med Inform Assoc 2008;15(1):14-24.
-
(2008)
J Am Med Inform Assoc
, vol.15
, Issue.1
, pp. 14-24
-
-
Uzuner, O.1
Goldstein, I.2
Luo, Y.3
-
81
-
-
67649352145
-
Recognizing obesity and comorbidities in sparse data
-
Uzuner O. Recognizing obesity and comorbidities in sparse data. J Am Med Inform Assoc 2009;16(4):61-70.
-
(2009)
J Am Med Inform Assoc
, vol.16
, Issue.4
, pp. 61-70
-
-
Uzuner, O.1
-
82
-
-
84908462937
-
Suicide note sentiment classification: A supervised approach augmented by web data
-
Xu Y, Wang Y, Liu J, et al. Suicide note sentiment classification: a supervised approach augmented by web data. Biomed Inform Insights 2012;5(Suppl. 1):31-41.
-
(2012)
Biomed Inform Insights
, vol.5
, pp. 31-41
-
-
Xu, Y.1
Wang, Y.2
Liu, J.3
-
83
-
-
78149480799
-
Extracting medication information from clinical text
-
Uzuner O, Solti I, Cadag E. Extracting medication information from clinical text. J Am Med Inform Assoc 2010;17(5): 514-8.
-
(2010)
J Am Med Inform Assoc
, vol.17
, Issue.5
, pp. 514-518
-
-
Uzuner, O.1
Solti, I.2
Cadag, E.3
-
84
-
-
80053292637
-
2010 i2b2/VA challenge on concepts, assertions, and relations in clinical text
-
Uzuner O, South BR, Shen S, et al. 2010 i2b2/VA challenge on concepts, assertions, and relations in clinical text. J Am Med Inform Assoc 2011;18(5):552-6.
-
(2011)
J Am Med Inform Assoc
, vol.18
, Issue.5
, pp. 552-556
-
-
Uzuner, O.1
South, B.R.2
Shen, S.3
-
91
-
-
84961308030
-
ShARe/CLEF eHealth evaluation lab 2014, Task 3: User-centred health information retrieval
-
Goeuriot L, Kelly L, Li W, et al. ShARe/CLEF eHealth evaluation lab 2014, Task 3: User-centred health information retrieval. In: Proceedings of the CLEF, 2014.
-
(2014)
Proceedings of the CLEF
-
-
Goeuriot, L.1
Kelly, L.2
Li, W.3
-
93
-
-
84876273527
-
Large-scale event extraction from literature with multi-level gene normalization
-
Van Landeghem S, Bjorne J, Wei CH, et al. Large-scale event extraction from literature with multi-level gene normalization. PLoS One 2013;8(4):e55814.
-
(2013)
PLoS One
, vol.8
, Issue.4
-
-
Van Landeghem, S.1
Bjorne, J.2
Wei, C.H.3
-
94
-
-
84890064920
-
DNorm: Disease name normalization with pairwise learning to rank
-
Leaman R, Islamaj Dogan R, Lu Z. DNorm: disease name normalization with pairwise learning to rank. Bioinformatics 2013;29(22):2909-17.
-
(2013)
Bioinformatics
, vol.29
, Issue.22
, pp. 2909-2917
-
-
Leaman, R.1
Islamaj Dogan, R.2
Lu, Z.3
-
95
-
-
84861856856
-
SR4GN: A species recognition software tool for gene normalization
-
Wei CH, Kao HY, Lu Z. SR4GN: a species recognition software tool for gene normalization. PLoS One 2012;7(6): e38460.
-
(2012)
PLoS One
, vol.7
, Issue.6
-
-
Wei, C.H.1
Kao, H.Y.2
Lu, Z.3
-
96
-
-
84925619870
-
tmChem: A high performance tool for chemical named entity recognition and normalization
-
Leaman R, Wei CH, Lu Z. tmChem: a high performance tool for chemical named entity recognition and normalization. J Cheminform 2015;7:S3.
-
(2015)
J Cheminform
, vol.7
, pp. S3
-
-
Leaman, R.1
Wei, C.H.2
Lu, Z.3
-
99
-
-
0034575782
-
Medical document anonymization with a semantic lexicon
-
Proc AMIA Symp
-
Ruch P, Baud RH, Rassinoux AM, et al. Medical document anonymization with a semantic lexicon. In: Proc AMIA Symp 2000, 729-33.
-
(2000)
, pp. 729-733
-
-
Ruch, P.1
Baud, R.H.2
Rassinoux, A.M.3
-
102
-
-
84876532610
-
Database resources of the National Center for Biotechnology Information
-
Coordinators NR. Database resources of the National Center for Biotechnology Information. Nucleic Acids Res 2013;41:D8-D20.
-
(2013)
Nucleic Acids Res
, vol.41
, pp. D8-D20
-
-
Coordinators, N.R.1
-
103
-
-
79960976768
-
UniProt Knowledgebase: A hub of integrated protein data
-
Magrane M, Consortium UniProt. UniProt Knowledgebase: a hub of integrated protein data. Database (Oxford) 2011; 2011:bar009.
-
(2011)
Database (Oxford) 2011
-
-
Magrane, M.1
-
104
-
-
68249085263
-
The Gene Ontology's Reference Genome Project: A unified framework for functional annotation across species
-
Reference Genome Group of the Gene Ontology Consortium. The Gene Ontology's Reference Genome Project: a unified framework for functional annotation across species. PLoS Comput Biol 2009;5(7):e1000431.
-
(2009)
PLoS Comput Biol
, vol.5
, Issue.7
-
-
-
105
-
-
79952765434
-
Semi-automatic semantic annotation of PubMed queries: A study on quality, efficiency, satisfaction
-
Neveol A, Islamaj Dogan R, Lu Z. Semi-automatic semantic annotation of PubMed queries: a study on quality, efficiency, satisfaction. J Biomed Inform 2011;44(2):310-8.
-
(2011)
J Biomed Inform
, vol.44
, Issue.2
, pp. 310-318
-
-
Neveol, A.1
Islamaj Dogan, R.2
Lu, Z.3
-
106
-
-
80053974142
-
OSCAR4: A flexible architecture for chemical text-mining
-
Jessop DM, Adams SE, Willighagen EL, et al. OSCAR4: a flexible architecture for chemical text-mining. J Cheminform 2011;3(1):41.
-
(2011)
J Cheminform
, vol.3
, Issue.1
, pp. 41
-
-
Jessop, D.M.1
Adams, S.E.2
Willighagen, E.L.3
-
107
-
-
84895437465
-
NCBI disease corpus: A resource for disease name recognition and concept normalization
-
Dogan RI, Leaman R, Lu Z. NCBI disease corpus: a resource for disease name recognition and concept normalization. J Biomed Inform 2014;47:1-10.
-
(2014)
J Biomed Inform
, vol.47
, pp. 1-10
-
-
Dogan, R.I.1
Leaman, R.2
Lu, Z.3
-
110
-
-
84960142062
-
NCBI at the 2014 BioASQ challenge task: Large-scale biomedical semantic indexing and question answering
-
Mao Y, Wei CH, Lu Z. NCBI at the 2014 BioASQ challenge task: large-scale biomedical semantic indexing and question answering. In: Proceedings of the 2014 Question Answering Lab at CLEF, 2014.
-
(2014)
Proceedings of the 2014 Question Answering Lab at CLEF
-
-
Mao, Y.1
Wei, C.H.2
Lu, Z.3
-
113
-
-
84876462011
-
Biocuration workflows and text mining: Overview of the BioCreative 2012 Workshop Track II
-
Lu Z, Hirschman L. Biocuration workflows and text mining: overview of the BioCreative 2012 Workshop Track II. Database (Oxford) 2012;2012:bas043.
-
(2012)
Database (Oxford) 2012
-
-
Lu, Z.1
Hirschman, L.2
-
114
-
-
84908098708
-
tagtog: Interactive and text-mining-assisted annotation of gene mentions in PLOS full-text articles
-
Cejuela JM, McQuilton P, Ponting L, et al. tagtog: interactive and text-mining-assisted annotation of gene mentions in PLOS full-text articles. Database (Oxford) 2014; 2014:bau033.
-
(2014)
Database (Oxford) 2014
-
-
Cejuela, J.M.1
McQuilton, P.2
Ponting, L.3
-
115
-
-
37849005226
-
Text Mining in GeneRIFs
-
PhD thesis, University of Colorado Denver
-
Lu Z. Text Mining in GeneRIFs. PhD thesis, University of Colorado Denver, 2007.
-
(2007)
-
-
Lu, Z.1
-
116
-
-
84960142065
-
The Recognition and Normalization of Biomedical and Biological Concepts
-
PhD thesis, National Cheng Kung University
-
Wei CH. The Recognition and Normalization of Biomedical and Biological Concepts. PhD thesis, National Cheng Kung University, 2012.
-
(2012)
-
-
Wei, C.H.1
-
118
-
-
84879330505
-
An overview of the BioCreative 2012 Workshop Track III: Interactive text mining task
-
Arighi CN, Carterette B, Cohen KB, et al. An overview of the BioCreative 2012 Workshop Track III: interactive text mining task. Database (Oxford) 2013;2013: bas056.
-
(2013)
Database (Oxford) 2013
-
-
Arighi, C.N.1
Carterette, B.2
Cohen, K.B.3
-
119
-
-
84987677359
-
Web services-based text-mining demonstrates broad impacts for interoperability and process simplification
-
Wiegers TC, Davis AP, Mattingly CJ. Web services-based text-mining demonstrates broad impacts for interoperability and process simplification. Database (Oxford) 2014;2014: bau050.
-
(2014)
Database (Oxford) 2014
-
-
Wiegers, T.C.1
Davis, A.P.2
Mattingly, C.J.3
-
120
-
-
84924440168
-
tmBioC: Improving interoperability of text-mining tools with BioC
-
Khare R, Wei CH, MaoY, et al. tmBioC: improving interoperability of text-mining tools with BioC. Database (Oxford) 2014;2014.
-
(2014)
Database (Oxford) 2014
-
-
Khare, R.1
Wei, C.H.2
Mao, Y.3
|