MyMiner: A web application for computer-assisted biocuration and text annotation

Bioinformatics

Volumn 28, Issue 17, 2012, Pages 2285-2287

  Salgado, David ^a   Krallinger, Martin ^b   Depaule, Marc ^c   Drula, Elodie ^c,d   Tendulkar, Ashish V ^e   Leitner, Florian ^b   Valencia, Alfonso ^b   Marcelle, Christophe ^a  

^a MONASH UNIVERSITY   (Australia)

^b Centro Nacional de Investigaciones Oncológicas   (Spain)

^c AIX MARSEILLE UNIVERSITÉ   (France)

^d Centre National de la Recherche Scientifique   (France)

^e INDIAN INSTITUTE OF TECHNOLOGY MADRAS   (India)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; COMPUTER PROGRAM; DATA MINING; INFORMATION RETRIEVAL; INTERNET; METHODOLOGY;

DATA MINING; INFORMATION STORAGE AND RETRIEVAL; INTERNET; SOFTWARE;

EID: 84865565208     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/bts435     Document Type: Article

References (15)

1. Arighi, C.N. et al. (2011) BioCreative III interactive task: an overview. BMC Bioinformatics, 12 (Suppl 8), S4.
2. Ciccarese, P. et al. (2012) Open semantic annotation of scientific publications using DOMEO. J Biomed Sem, 3, S1.
3. Cunningham, H. et al. (2011) Text Processing with GATE (Version 6), University of Sheffield, Department of Computer Science, 2011.
4. Fontaine, J.-F. et al. (2009) MedlineRanker: flexible ranking of biomedical literature. Nucleic Acids Res., 37, W141-W146.
5. Gerner, M. et al. (2010) LINNAEUS: a species name identification system for biomedical literature. BMC Bioinformatics, 11, 85.
6. Howe, D. et al. (2008) Big data: the future of biocuration. Nature, 455, 47-50.
7. Jonquet, C. et al. (2008) The open biomedical annotator. Summit on Translat Bioinforma, 2009, 56-60.
8. Kim, S. et al. (2012) PIE the search: searching PubMed literature for protein interaction information. Bioinformatics, 28, 597-598.
9. Krallinger, M. (2010) Importance of negations and experimental qualifiers in biomedical literature. In Proceedings of the Workshop on Negation and Speculation in Natural Language Processing. Association for Computational Linguistics, pp. 46-49.
10. Krallinger, M. et al. (2009) Creating reference datasets for systems biology applications using text mining. Ann. N Y Acad. Sci., 1158, 14-28.
11. Krallinger, M. et al. (2011) The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text. BMC Bioinformatics, 12 (Suppl 8), S3.
12. Ogren, P. (2006) Knowtator: a Protégé plug-in for annotated corpus construction. In In The Proceedings of the 2006 Conference of the North American Chapter of the Association for Computational Linguistics on Human Language Technology. pp. 273-275.
13. Settles, B. (2005) ABNER: an open source tool for automatically tagging genes, proteins and other entity names in text. Bioinformatics, 21, 3191-3192.
14. Stenetorp, P. et al. (2012) BRAT: A Web-based Tool for NLP-Assisted Text Annotation. In Proceedings of the Demonstrations Session at EACL 2012. (to appear) 2012.
15. Wei, C. et al. (2012) PubTator: a PubMed-like interactive curation system for document triage and literature curation. In Proceedings of the BioCreative 2012 workshop. pp. 145-150.