-
1
-
-
33947304181
-
Overview of BioCreAtIvE: Critical assessment of information extraction for biology
-
Hirschman, L., Yeh, A., Blaschke, C. et al. (2005) Overview of BioCreAtIvE: critical assessment of information extraction for biology. BMC Bioinformatics, 6 (Suppl 1), S1.
-
(2005)
BMC Bioinformatics
, vol.6
, pp. S1
-
-
Hirschman, L.1
Yeh, A.2
Blaschke, C.3
-
2
-
-
51049084462
-
Evaluation of text-mining systems for biology: Overview of the second BioCreative community challenge
-
Krallinger, M., Morgan, A., Smith, L. et al. (2008) Evaluation of text-mining systems for biology: overview of the Second BioCreative community challenge. Genome Biol., 9 (Suppl 2), S1.
-
(2008)
Genome Biol.
, vol.9
, pp. S1
-
-
Krallinger, M.1
Morgan, A.2
Smith, L.3
-
3
-
-
77955441742
-
An overview of BioCreative II.5
-
Leitner, F., Mardis, S.A., Krallinger, M. et al. (2010) An overview of BioCreative II.5. IEEE/ACM Trans. Comput. Biol. Bioinform., 7, 385-399.
-
(2010)
IEEE/ACM Trans. Comput. Biol. Bioinform.
, vol.7
, pp. 385-399
-
-
Leitner, F.1
Mardis, S.A.2
Krallinger, M.3
-
4
-
-
80053414432
-
Overview of the BioCreative III workshop
-
Arighi, C.N., Lu, Z., Krallinger, M. et al. (2011) Overview of the BioCreative III Workshop. BMC Bioinformatics, 12 (Suppl 8), S1.
-
(2011)
BMC Bioinformatics
, vol.12
, pp. S1
-
-
Arighi, C.N.1
Lu, Z.2
Krallinger, M.3
-
5
-
-
84876501269
-
BioCreative-2012 virtual issue
-
Wu, C.H., Arighi, C.N., Cohen, K.B. et al. BioCreative-2012 virtual issue. Database (Oxford), 2012, bas049.
-
Database (Oxford)
, vol.2012
-
-
Wu, C.H.1
Arighi, C.N.2
Cohen, K.B.3
-
6
-
-
84862192725
-
The UniProt-GO annotation database in 2011
-
Dimmer, E.C., Huntley, R.P., Alam-Faruque, Y. et al. (2012) The UniProt-GO annotation database in 2011. Nucleic Acids Res., 40, 28.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 28
-
-
Dimmer, E.C.1
Huntley, R.P.2
Alam-Faruque, Y.3
-
7
-
-
84891799734
-
The MIntAct project - IntAct as a common curation platform for 11 molecular interaction databases
-
Orchard, S., Ammari, M., Aranda, B. et al. (2014) The MIntAct project - IntAct as a common curation platform for 11 molecular interaction databases. Nucleic Acids Res., 42, 13.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. 13
-
-
Orchard, S.1
Ammari, M.2
Aranda, B.3
-
8
-
-
75549083295
-
MINT, the molecular interaction database: 2009 update
-
Ceol, A., Chatr Aryamontri, A., Licata, L. et al. (2010) MINT, the molecular interaction database: 2009 update. Nucleic Acids Res., 38, D532-D539.
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. D532-D539
-
-
Ceol, A.1
Chatr Aryamontri, A.2
Licata, L.3
-
9
-
-
84874947727
-
The BioGRID interaction database: 2013 update
-
Chatr-Aryamontri, A., Breitkreutz, B.J., Heinicke, S., et al. (2013) The BioGRID interaction database: 2013 update. Nucleic Acids Res., 41, 30.
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. 30
-
-
Chatr-Aryamontri, A.1
Breitkreutz, B.J.2
Heinicke, S.3
-
10
-
-
84891808813
-
FlyBase 102 - Advanced approaches to interrogating FlyBase
-
St Pierre, S.E., Ponting, L., Stefancsik, R. et al. (2014) FlyBase 102 - advanced approaches to interrogating FlyBase. Nucleic Acids Res., 42, 13.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. 13
-
-
St Pierre, S.E.1
Ponting, L.2
Stefancsik, R.3
-
11
-
-
84891788593
-
The mouse genome database: Integration of and access to knowledge about the laboratory mouse
-
Blake, J.A., Bult, C.J., Eppig, J.T. et al. (2014) The Mouse Genome Database: integration of and access to knowledge about the laboratory mouse. Nucleic Acids Res., 42, 26.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. 26
-
-
Blake, J.A.1
Bult, C.J.2
Eppig, J.T.3
-
12
-
-
84862234802
-
The arabidopsis information resource (TAIR): Improved gene annotation and new tools
-
Lamesch, P., Berardini, T.Z., Li, D. et al. (2012) The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools. Nucleic Acids Res., 40, 2.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 2
-
-
Lamesch, P.1
Berardini, T.Z.2
Li, D.3
-
13
-
-
84876467333
-
The comparative toxicogenomics database: Update 2013
-
Davis, A.P., Murphy, C.G., Johnson, R. et al. (2013) The comparative toxicogenomics database: update 2013. Nucleic Acids Res, 41, 23.
-
(2013)
Nucleic Acids Res
, vol.41
, pp. 23
-
-
Davis, A.P.1
Murphy, C.G.2
Johnson, R.3
-
14
-
-
84891752160
-
WormBase 2014: New views of curated biology
-
Harris, T.W., Baran, J., Bieri, T. et al. (2014) WormBase 2014: new views of curated biology. Nucleic Acids Res., 42, 4.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. 4
-
-
Harris, T.W.1
Baran, J.2
Bieri, T.3
-
15
-
-
84876462011
-
Biocuration workflows and text mining: Overview of the BioCreative 2012 workshop track II
-
Lu, Z. and Hirschman, L. (2012) Biocuration workflows and text mining: overview of the BioCreative 2012 Workshop Track II. Database(Oxford), 2012, bas043.
-
(2012)
Database(Oxford)
, vol.2012
-
-
Lu, Z.1
Hirschman, L.2
-
16
-
-
84859699831
-
The gene ontology: Enhancements for 2011
-
Gene Ontology Consortium (2012) The Gene Ontology: enhancements for 2011. Nucleic Acids Res., 40, 18.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 18
-
-
-
17
-
-
84862260856
-
How to link ontologies and protein-protein interactions to literature: Text-mining approaches and the BioCreative experience
-
Krallinger, M., Leitner, F., Vazquez, M. et al. (2012) How to link ontologies and protein-protein interactions to literature: text-mining approaches and the BioCreative experience. Database(Oxford), 2012, bas017.
-
(2012)
Database(Oxford)
, vol.2012
-
-
Krallinger, M.1
Leitner, F.2
Vazquez, M.3
-
18
-
-
33845442570
-
Evaluation of BioCreAtIvE assessment of task 2
-
Blaschke, C., Leon, E.A., Krallinger, M. et al. (2005) Evaluation of BioCreAtIvE assessment of task 2. BMC Bioinformatics, 6, 24.
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 24
-
-
Blaschke, C.1
Leon, E.A.2
Krallinger, M.3
-
19
-
-
84892753494
-
BioC: A minimalist approach to interoperability for biomedical text processing
-
Comeau, D.C., Islamaj Dogan, R., Ciccarese, P. et al. (2013) BioC: a minimalist approach to interoperability for biomedical text processing. Database(Oxford), 2013, bat064.
-
(2013)
Database(Oxford)
, vol.2013
-
-
Comeau, D.C.1
Islamaj Dogan, R.2
Ciccarese, P.3
-
20
-
-
84884191657
-
Rat genome database: A unique resource for rat, human, and mouse quantitative trait locus data
-
Nigam, R., Laulederkind, S.J., Hayman, G.T. et al. (2013) Rat Genome Database: a unique resource for rat, human, and mouse quantitative trait locus data. Physiol. Genomics, 45, 809-816.
-
(2013)
Physiol. Genomics
, vol.45
, pp. 809-816
-
-
Nigam, R.1
Laulederkind, S.J.2
Hayman, G.T.3
-
21
-
-
80053515344
-
MaizeGDB: Curation and outreach go hand-in-hand
-
Schaeffer, M.L., Harper, L.C., Gardiner, J.M. et al. (2011) MaizeGDB: curation and outreach go hand-in-hand. Database (Oxford), 2011, bar022.
-
(2011)
Database (Oxford)
, vol.2011
-
-
Schaeffer, M.L.1
Harper, L.C.2
Gardiner, J.M.3
-
22
-
-
41349103793
-
Overview of BioCreative II gene normalization
-
Morgan, A., Lu, Z., Wang, X. et al. (2008) Overview of BioCreative II gene normalization. Genome Biol., 9, S3.
-
(2008)
Genome Biol.
, vol.9
, pp. S3
-
-
Morgan, A.1
Lu, Z.2
Wang, X.3
-
23
-
-
80052774027
-
The gene normalization task in BioCreative III
-
Lu, Z., Kao, H.Y., Wei, C.H. et al. (2011) The gene normalization task in BioCreative III. BMC Bioinformatics, 12 (Suppl 8), S2.
-
(2011)
BMC Bioinformatics
, vol.12
, pp. S2
-
-
Lu, Z.1
Kao, H.Y.2
Wei, C.H.3
-
24
-
-
80053423937
-
The proteinprotein interaction tasks of BioCreative III: Classification/ranking of articles and linking bio-ontology concepts to full text
-
Krallinger, M., Vazquez, M., Leitner, F. et al. (2011) The proteinprotein interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text. BMC Bioinformatics, 3, 1471-2105.
-
(2011)
BMC Bioinformatics
, vol.3
, pp. 1471-2105
-
-
Krallinger, M.1
Vazquez, M.2
Leitner, F.3
-
25
-
-
77955441742
-
An overview of BioCreative II.5
-
Leitner, F., Mardis, S., Krallinger, M. et al. (2010) An overview of BioCreative II.5. IEEE/ACM Trans. Comput. Biol. Bioinform., 7, 385-399.
-
(2010)
IEEE/ACM Trans. Comput. Biol. Bioinform.
, vol.7
, pp. 385-399
-
-
Leitner, F.1
Mardis, S.2
Krallinger, M.3
-
26
-
-
40549140499
-
BANNER: An executable survey of advances in biomedical named entity recognition
-
Leaman, R. and Gonzalez, G. (2008) BANNER: an executable survey of advances in biomedical named entity recognition. Pac. Symp. Biocomput., 652-663.
-
(2008)
Pac. Symp. Biocomput.
, pp. 652-663
-
-
Leaman, R.1
Gonzalez, G.2
-
27
-
-
84895506825
-
ProNormz - An integrated approach for human proteins and protein kinases normalization
-
Subramani, S., Raja, K. and Natarajan, J. (2014) ProNormz - an integrated approach for human proteins and protein kinases normalization. J. Biomed. Inform., 47, 131-138.
-
(2014)
J. Biomed. Inform.
, vol.47
, pp. 131-138
-
-
Subramani, S.1
Raja, K.2
Natarajan, J.3
-
28
-
-
84866335637
-
Integrating various resources for gene name normalization
-
Hu, Y., Li, Y., Lin, H. et al. (2012) Integrating various resources for gene name normalization. PLoS One, 7, 12.
-
(2012)
PLoS One
, vol.7
, pp. 12
-
-
Hu, Y.1
Li, Y.2
Lin, H.3
-
29
-
-
84880461878
-
Improving protein-protein interaction pair ranking with an integrated global association score
-
Tsai, R.T. (2012) Improving protein-protein interaction pair ranking with an integrated global association score. IEEE/ACM Trans. Comput. Biol. Bioinform., 9, 1690-1695.
-
(2012)
IEEE/ACM Trans. Comput. Biol. Bioinform.
, vol.9
, pp. 1690-1695
-
-
Tsai, R.T.1
-
30
-
-
84892602367
-
A multistage gene normalization system integrating multiple effective methods
-
Li, L., Liu, S., Fan, W. et al. (2013) A multistage gene normalization system integrating multiple effective methods. PLoS One, 8, e81956
-
(2013)
PLoS One
, vol.8
-
-
Li, L.1
Liu, S.2
Fan, W.3
-
31
-
-
48449105927
-
PIE: An online prediction system for protein-protein interactions from text
-
Kim, S., Shin, S.Y., Lee, I.H. et al. (2008) PIE: an online prediction system for protein-protein interactions from text. Nucleic Acids Res., 36, W411-W415.
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. W411-W415
-
-
Kim, S.1
Shin, S.Y.2
Lee, I.H.3
-
32
-
-
84857143714
-
PIE the search: Searching PubMed literature for protein interaction information
-
Kim, S., Kwon, D., Shin, S.Y. et al. (2012) PIE the search: searching PubMed literature for protein interaction information. Bioinformatics, 28, 597-598.
-
(2012)
Bioinformatics
, vol.28
, pp. 597-598
-
-
Kim, S.1
Kwon, D.2
Shin, S.Y.3
-
33
-
-
80053432627
-
Cross-species gene normalization by species inference
-
Wei, C.H. and Kao, H.Y. (2011) Cross-species gene normalization by species inference. BMC Bioinformatics, 3, 1471-2105.
-
(2011)
BMC Bioinformatics
, vol.3
, pp. 1471-2105
-
-
Wei, C.H.1
Kao, H.Y.2
-
34
-
-
79953325924
-
GeneTUKit: A software for document-level gene normalization
-
Huang, M., Liu, J. and Zhu, X. (2011) GeneTUKit: a software for document-level gene normalization. Bioinformatics, 27, 1032-1033.
-
(2011)
Bioinformatics
, vol.27
, pp. 1032-1033
-
-
Huang, M.1
Liu, J.2
Zhu, X.3
-
35
-
-
51049105083
-
OntoGene in BioCreative II
-
Rinaldi, F., Kappeler, T., Kaljurand, K. et al. (2008) OntoGene in BioCreative II. Genome Biology, 9, S13.
-
(2008)
Genome Biology
, vol.9
, pp. S13
-
-
Rinaldi, F.1
Kappeler, T.2
Kaljurand, K.3
-
36
-
-
77955450675
-
OntoGene in BioCreative II.5
-
Rinaldi, F., Schneider, G., Kaljurand, K. et al. (2010) OntoGene in BioCreative II.5. IEEE/ACM Trans. Comput. Biol. Bioinform., 7, 472-480.
-
(2010)
IEEE/ACM Trans. Comput. Biol. Bioinform.
, vol.7
, pp. 472-480
-
-
Rinaldi, F.1
Schneider, G.2
Kaljurand, K.3
|