SIMToolbox: A MATLAB toolbox for structured illumination fluorescence microscopy

Bioinformatics

Volumn 32, Issue 2, 2016, Pages 318-320

  Křížek, Pavel ^a   Lukeš, Tomáš ^b,c   Ovesný, Martin ^a   Fliegel, Karel ^b   Hagen, Guy M ^d  

^a CHARLES UNIVERSITY   (Czech Republic)

^b CZECH TECHNICAL UNIVERSITY IN PRAGUE   (Czech Republic)

^c EPFL   (Switzerland)

^d UNIVERSITY OF COLORADO   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ACTIN FILAMENT; FLUORESCENCE; FLUORESCENCE MICROSCOPY; HEPG2 CELL LINE; HUMAN; ILLUMINATION; IMAGE PROCESSING; PROCEDURES; SOFTWARE; THREE DIMENSIONAL IMAGING; ULTRASTRUCTURE;

ACTIN CYTOSKELETON; FLUORESCENCE; HEP G2 CELLS; HUMANS; IMAGE PROCESSING, COMPUTER-ASSISTED; IMAGING, THREE-DIMENSIONAL; LIGHTING; MICROSCOPY, FLUORESCENCE; SOFTWARE;

EID: 84959881116     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btv576     Document Type: Article

References (12)

1. Cole, M. J. et al. (2001) Time-domain whole-field fluorescence lifetime imaging with optical sectioning. J. Microsc., 203, 246-257.
2. Gustafsson, M. G. L. (2000) Surpassing the lateral resolution limit by a factor of two using structured illumination microscopy. J. Microsc., 198, 82-87.
3. Gustafsson, M. G. L. et al. (2008) Three-dimensional resolution doubling in widefield fluorescence microscopy by structured illumination. Biophys. J., 94, 4957-4970.
4. Heintzmann, R. (2006) Structured illumination methods. In: Pawley, J. B. (ed.) Handbook of Biological Confocal Microscopy. Springer, New York, pp. 265-279.
5. Heintzmann, R. And Cremer, C. (1998) Laterally modulated excitation microscopy: improvement of resolution by using a diffraction grating. Proc. SPIE, 3568, 185-196.
6. Kr?íz?ek, P. et al. (2012) Flexible structured illumination microscope with a programmable illumination array. Opt. Express, 20, 24585-24599.
7. Lukes?, T. et al. (2014a) Comparison of image reconstruction methods for structured illumination microscopy. In: Popp, J. et al. (eds.) SPIE Photonics Europe. International Society for Optics and Photonics, Bellingham, WA, p. 91293J.
8. Lukes?, T. et al. (2014b) Three-dimensional super-resolution structured illumination microscopy with maximum a posteriori probability image estimation. Opt. Express, 22, 29805-29817.
9. Neil, M. A. A. et al. (1997) Method of obtaining optical sectioning by using structured light in a conventional microscope. Opt. Lett., 22, 1905-1907.
10. Ovesný, M. et al. (2014) ThunderSTORM: A comprehensive ImageJ plug-in for PALM and STORM data analysis and super-resolution imaging. Bioinformatics, 30, 2389-2390.
11. Righolt, C. H. et al. (2013) Image filtering in structured illumination microscopy using the Lukosz bound. Opt. Express, 21, 24431-24451.
12. Wilson, T. (2011) Optical sectioning in fluorescence microscopy. J. Microsc., 242, 111-116.