Flexible structured illumination microscope with a programmable illumination array

Optics Express

Volumn 20, Issue 22, 2012, Pages 24585-24599

  Křžek, Pavel ^a   Raška, Ivan ^a   Hagen, Guy M ^a  

^a CHARLES UNIVERSITY   (Czech Republic)

Author keywords

[No Author keywords available]

Indexed keywords

BIOLOGICAL SAMPLES; CAMERA SENSOR; CONFOCAL LASER SCANNING; DATA PROCESSING METHODS; FERROELECTRIC LIQUID CRYSTAL; HIGH RESOLUTION IMAGE; ILLUMINATION PATTERNS; IMAGE PROCESSING - METHODS; MICRODISPLAYS; OPTICAL SECTIONING; OPTICAL SECTIONS; OUT-OF-FOCUS LIGHT; RECONSTRUCTED IMAGE; SPATIAL FREQUENCY; SPINNING DISKS; STRUCTURED ILLUMINATION; STRUCTURED ILLUMINATION MICROSCOPY; WIDE-FIELD;

IMAGE PROCESSING; LIQUID CRYSTALS; MATHEMATICAL MODELS; OPTICAL MICROSCOPY;

OPTICAL DATA PROCESSING;

SILICON;

ARTICLE; CALIBRATION; CHEMISTRY; EQUIPMENT; ILLUMINATION; LIQUID CRYSTAL; MICROSCOPY; PLIABILITY;

CALIBRATION; LIGHTING; LIQUID CRYSTALS; MICROSCOPY; PLIABILITY; SILICON;

EID: 84868241362     PISSN: None     EISSN: 10944087     Source Type: Journal    
DOI: 10.1364/OE.20.024585     Document Type: Article

References (30)

1. R. Heintzmann, "Structured illumination methods", in Handbook of Biological Confocal Microscopy 3rd ed., J. B. Pawley, ed. (Springer Science + Business Media, 2006), pp. 265-279.
2. T. Wilson, "Optical sectioning in fluorescence microscopy", J. Microsc. 242(2), 111-116 (2011).
3. M. A. A. Neil, R. Juškaitis, and T. Wilson, "Method of obtaining optical sectioning by using structured light in a conventional microscope", Opt. Lett. 22(24), 1905-1907 (1997).
4. M. G. L. Gustafsson, "Surpassing the lateral resolution limit by a factor of two using structured illumination microscopy", J. Microsc. 198(2), 82-87 (2000).
5. R. Heintzmann and C. Cremer, "Laterally modulated excitation microscopy: improvement of resolution by using a diffraction grating", Proc. SPIE 3568, 185-196 (1999).
6. F. Chasles, B. Dubertret, and A. C. Boccara, "Optimization and characterization of a structured illumination microscope", Opt. Express 15(24), 16130-16140 (2007).
7. T. Fukano and A. Miyawaki, "Whole-field fluorescence microscope with digital micromirror device: imaging of biological samples", Appl. Opt. 42(19), 4119-4124 (2003).
8. T. Fukano, A. Sawano, Y. Ohba, M. Matsuda, and A. Miyawaki, "Differential Ras activation between caveolae/raft and non-raft microdomains", Cell Struct. Funct. 32(1), 9-15 (2007).
9. D. M. Rector, D. M. Ranken, and J. S. George, "High-performance confocal system for microscopic or endoscopic applications", Methods 30(1), 16-27 (2003).
10. S. Monneret, M. Rauzi, and P. F. Lenne, "Highly flexible whole-field sectioning microscope with liquid-crystal light modulator", J. Opt. A, Pure Appl. Opt. 8(7), S461-S466 (2006).
11. P. Kner, B. B. Chhun, E. R. Griffis, L. Winoto, and M. G. L. Gustafsson, "Super-resolution video microscopy of live cells by structured illumination", Nat. Methods 6(5), 339-342 (2009).
12. L. Shao, P. Kner, E. H. Rego, and M. G. L. Gustafsson, "Super-resolution 3D microscopy of live whole cells using structured illumination", Nat. Methods 8(12), 1044-1046 (2011).
13. G. M. Hagen, W. Caarls, K. A. Lidke, A. H. B. deVries, C. Fritsch, B. G. Barisas, D. J. Arndt-Jovin, and T. M. Jovin, "Fluorescence recovery after photobleaching and photoconversion in multiple arbitrary regions of interest using a programmable array microscope", Microsc. Res. Tech. 72, 431-440 (2009).
14. G. M. Hagen, W. Caarls, M. Thomas, A. Hill, K. A. Lidke, B. Rieger, C. Fritsch, B. van Geest, T. M. Jovin, and D. J. Arndt-Jovin, "Biological applications of an LCoS-based programmable array microscope", Proc. SPIE 6441, 64410S (2007).
15. R. Heintzmann and P. A. Benedetti, "High-resolution image reconstruction in fluorescence microscopy with patterned excitation", Appl. Opt. 45(20), 5037-5045 (2006).
16. D. Armitage, I. Underwood, and S.-T. Wu, Introduction to Microdisplays (John Wiley and Sons, 2006), p. 377.
17. R. Heintzmann, Q. S. Hanley, D. Arndt-Jovin, and T. M. Jovin, "A dual path programmable array microscope (PAM): simultaneous acquisition of conjugate and non-conjugate images", J. Microsc. 204(2), 119-135 (2001).
18. C. Ventalon and J. Mertz, "Dynamic speckle illumination microscopy with translated versus randomized speckle patterns", Opt. Express 14(16), 7198-7209 (2006).
19. M. Šonka, V. Hlaváè, and R. Boyle, Image Processing Analysis and Machine Vision 2nd ed. (PWS Publishing, 1998), p. 770.
20. D. C. Brown, "Decentering distortion of lenses", Photogramm. Eng. 32, 444-462 (1966).
21. J. Weng, P. Cohen, and M. Herniou, "Camera calibration with distortion models and accuracy evaluation", IEEE Trans. Pattern Anal. Mach. Intell. 14(10), 965-980 (1992).
22. J. A. Noble, "Descriptions of image surfaces", (University of Oxford, Oxford, 1989).
23. M. J. Cole, J. Siegel, S. E. D. Webb, R. Jones, K. Dowling, M. J. Dayel, D. Parsons-Karavassilis, P. M. W. French, M. J. Lever, L. O. D. Sucharov, M. A. A. Neil, R. Juskaitis, and T. Wilson, "Time-domain whole-field fluorescence lifetime imaging with optical sectioning", J. Microsc. 203(3), 246-257 (2001).
24. Q. S. Hanley, P. J. Verveer, M. J. Gemkow, D. J. Arndt-Jovin, and T. M. Jovin, "An optical sectioning programmable array microscope implemented with a digital micromirror device", J. Microsc. 196(3), 317-331 (1999).
25. P. J. Verveer, Q. S. Hanley, P. W. Verbeek, L. J. van Vliet, and T. M. Jovin, "Theory of confocal fluorescence imaging in the programmable array microscope (PAM)", J. Microsc. 189(3), 192-198 (1998).
26. R. Wolleschensky, B. Zimmermann, and M. Kempe, "High-speed confocal fluorescence imaging with a novel line scanning microscope", J. Biomed. Opt. 11(6), 064011 (2006).
27. P. A. A. DeBeule, A. H. B. deVries, D. J. Arndt-Jovin, and T. M. Jovin, "Generation-3 programmable array microscope (PAM) with digital micro-mirror device (DMD)", Proc. SPIE 7932(1), 79320G (2011).
28. P. Køížek and G. M. Hagen, "Spatial light modulators in fluorescence microscopy", in Microscopy: Science, Technology, Applications and Education 4th ed., A. Méndez-Vilas and J. Díaz, eds. (Formatex, 2010), pp. 1366-1377.
29. L. M. Hirvonen, K. Wicker, O. Mandula, and R. Heintzmann, "Structured illumination microscopy of a living cell", Eur. Biophys. J. 38(6), 807-812 (2009).
30. T. A. Planchon, L. Gao, D. E. Milkie, M. W. Davidson, J. A. Galbraith, C. G. Galbraith, and E. Betzig, "Rapid three-dimensional isotropic imaging of living cells using Bessel beam plane illumination", Nat. Methods 8(5), 417-423 (2011).